Wall clock time and date at job start Tue Mar 31 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00218 * 2 1 4 4 H 1.48495 * 109.47036 * 269.99989 * 3 2 1 5 5 H 1.48496 * 109.46979 * 29.99877 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00186 * 3 2 1 7 7 C 1.37878 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00193 * 173.68921 * 7 2 1 9 9 C 1.50705 * 119.99939 * 353.68724 * 7 2 1 10 10 C 1.52997 * 115.54842 * 85.64759 * 9 7 2 11 11 S 1.81409 * 109.46786 * 65.33415 * 10 9 7 12 12 C 1.81398 * 102.99763 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46749 * 180.02562 * 12 11 10 14 14 C 1.38230 * 119.60612 * 90.00178 * 13 12 11 15 15 C 1.38603 * 119.17719 * 179.97438 * 14 13 12 16 16 C 1.38790 * 118.41076 * 0.02562 * 15 14 13 17 17 Cl 1.73597 * 120.43074 * 179.97438 * 16 15 14 18 18 C 1.38303 * 119.13204 * 0.02562 * 16 15 14 19 19 N 1.31856 * 119.59900 * 269.72625 * 13 12 11 20 20 C 1.52992 * 117.49944 * 231.32351 * 9 7 2 21 21 C 1.52996 * 117.49540 * 299.98376 * 9 7 2 22 22 H 0.97008 * 119.99886 * 355.02196 * 1 2 3 23 23 H 1.08998 * 109.47742 * 305.33533 * 10 9 7 24 24 H 1.08996 * 109.47186 * 185.32829 * 10 9 7 25 25 H 1.08998 * 109.47368 * 299.99993 * 12 11 10 26 26 H 1.09002 * 109.47279 * 60.00545 * 12 11 10 27 27 H 1.08000 * 120.40830 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.79703 * 180.02562 * 15 14 13 29 29 H 1.07998 * 119.62170 * 180.02562 * 18 16 15 30 30 H 1.09001 * 117.49958 * 215.00325 * 20 9 7 31 31 H 1.09002 * 117.50086 * 0.02562 * 20 9 7 32 32 H 1.09001 * 117.50265 * 359.97438 * 21 9 7 33 33 H 1.08997 * 117.49819 * 144.97282 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1969 -0.1033 9 6 1.2578 -2.4953 0.1424 10 6 0.7094 -3.0876 -1.1573 11 16 2.0892 -3.5543 -2.2386 12 6 1.2523 -4.2249 -3.7016 13 6 2.2810 -4.6650 -4.7111 14 6 2.7626 -5.9602 -4.6751 15 6 3.7082 -6.3558 -5.6081 16 6 4.1371 -5.4285 -6.5475 17 17 5.3201 -5.8674 -7.7397 18 6 3.6104 -4.1499 -6.5206 19 7 2.7069 -3.8116 -5.6215 20 6 1.7409 -3.4728 1.2156 21 6 0.4342 -2.7009 1.4152 22 1 -0.4850 0.8370 0.0729 23 1 0.0880 -2.3468 -1.6605 24 1 0.1111 -3.9699 -0.9305 25 1 0.6406 -5.0789 -3.4108 26 1 0.6171 -3.4559 -4.1413 27 1 2.4064 -6.6554 -3.9292 28 1 4.1019 -7.3614 -5.6042 29 1 3.9382 -3.4222 -7.2482 30 1 1.6681 -4.5379 0.9958 31 1 2.5985 -3.1746 1.8187 32 1 0.4327 -1.8953 2.1495 33 1 -0.4985 -3.2579 1.3266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261658136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:20 Heat of formation + Delta-G solvation = 45.282001 kcal Electronic energy + Delta-G solvation = -16690.384570 eV Core-core repulsion = 13868.758120 eV Total energy + Delta-G solvation = -2821.626450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37737 -36.88178 -36.57832 -32.85927 -32.56309 -31.92392 -28.04109 -27.31013 -25.28520 -23.89685 -22.35098 -21.12997 -19.22958 -17.29769 -16.84920 -16.34672 -15.74630 -15.40128 -14.61348 -14.43390 -13.93608 -13.81204 -13.59952 -13.29599 -12.98411 -12.75469 -12.28392 -12.02329 -11.82510 -11.49120 -11.28890 -10.96976 -10.88484 -10.46196 -10.21614 -10.03085 -9.72908 -9.59953 -9.51128 -8.84218 -8.79285 -8.42123 -8.02768 -6.84370 -6.03588 -4.08629 0.64739 1.00673 1.80321 2.32249 3.33120 3.40001 3.40462 3.44057 3.65606 4.12530 4.44261 4.47253 4.52568 4.74950 5.04809 5.25750 5.31422 5.37171 5.46358 5.66002 5.77898 5.85010 5.94236 6.18856 6.32794 6.37830 6.50887 6.71674 6.79492 7.05263 7.39021 7.47682 7.76718 7.90103 8.39804 8.93159 9.57899 11.05572 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.003764 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.973832 B = 7437.827806 C = 8135.371596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.028 4.028 11 S -0.220 6.220 12 C -0.063 4.063 13 C 0.165 3.835 14 C -0.146 4.146 15 C -0.065 4.065 16 C -0.097 4.097 17 Cl -0.062 7.062 18 C 0.120 3.880 19 N -0.455 5.455 20 C -0.205 4.205 21 C -0.147 4.147 22 H 0.260 0.740 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.165 0.835 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 -12.927 -11.411 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.054 3.946 10 C -0.177 4.177 11 S 0.009 5.991 12 C -0.211 4.211 13 C 0.026 3.974 14 C -0.167 4.167 15 C -0.091 4.091 16 C -0.127 4.127 17 Cl -0.033 7.033 18 C -0.039 4.039 19 N -0.164 5.164 20 C -0.243 4.243 21 C -0.187 4.187 22 H 0.069 0.931 23 H 0.104 0.896 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.182 0.818 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.792 -11.876 -11.410 17.152 hybrid contribution -0.514 -0.056 -0.291 0.593 sum 4.278 -11.933 -11.700 17.251 Atomic orbital electron populations 1.70005 1.05863 1.26816 1.49181 1.24929 0.94771 0.98881 0.94423 0.86662 0.80013 0.83484 0.78297 1.20474 1.21284 1.19847 1.20379 0.92935 0.88465 1.50489 0.92010 1.18432 0.98165 0.93924 0.84108 1.23164 0.95349 1.00555 0.98603 1.87143 1.17566 1.80509 1.13889 1.22243 0.98106 1.04134 0.96659 1.20678 0.94648 0.89564 0.92470 1.21981 0.97801 0.97370 0.99597 1.21492 0.95348 0.99698 0.92574 1.22091 0.97743 0.96931 0.95928 1.98372 1.56214 1.93008 1.55711 1.22800 0.91930 0.92956 0.96181 1.67672 1.10579 1.35310 1.02848 1.23025 0.98444 0.95772 1.07023 1.22576 0.92187 1.01182 1.02779 0.93072 0.89609 0.93288 0.89068 0.88352 0.83542 0.83715 0.81800 0.91421 0.90275 0.89763 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 12.90 55.43 0.71 -23.84 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.49 -13.13 8.49 -34.44 -0.29 -13.42 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.06 1.33 1.34 -155.67 -0.21 1.13 16 10 C -0.03 -0.62 5.80 37.16 0.22 -0.40 16 11 S -0.22 -4.36 21.41 -107.50 -2.30 -6.66 16 12 C -0.06 -0.97 6.23 36.01 0.22 -0.75 16 13 C 0.16 2.36 6.04 -82.58 -0.50 1.86 16 14 C -0.15 -1.68 9.74 -39.45 -0.38 -2.06 16 15 C -0.06 -0.66 9.98 -39.24 -0.39 -1.05 16 16 C -0.10 -1.07 6.34 -39.35 -0.25 -1.32 16 17 Cl -0.06 -0.59 28.99 -51.86 -1.50 -2.09 16 18 C 0.12 1.49 10.99 -17.51 -0.19 1.30 16 19 N -0.45 -6.91 10.27 -9.44 -0.10 -7.01 16 20 C -0.21 -4.40 9.96 -26.70 -0.27 -4.67 16 21 C -0.15 -3.35 9.40 -26.70 -0.25 -3.60 16 22 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 23 H 0.09 2.05 8.14 -51.92 -0.42 1.62 16 24 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 25 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 26 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 27 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -28.96 319.47 -9.98 -38.94 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.19 Total: 0.64 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.39 Total: -21.10 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.62 Total: -30.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -2.30 Total: -6.66 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.96 -9.98 -38.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261658136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.218 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds