Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76193 * 100.00321 * 2 1 4 4 C 1.36414 * 125.11170 * 180.02562 * 3 2 1 5 5 C 1.36717 * 114.85466 * 179.72107 * 4 3 2 6 6 C 1.37181 * 114.61251 * 0.50568 * 5 4 3 7 7 C 1.40835 * 125.20659 * 179.78821 * 6 5 4 8 8 C 1.36205 * 119.99878 * 179.72200 * 7 6 5 9 9 C 1.40945 * 119.99817 * 179.97438 * 8 7 6 10 10 O 1.21859 * 119.99677 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99787 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99969 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47148 * 179.72251 * 12 11 9 14 14 H 1.08002 * 120.00318 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99922 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99824 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99920 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46763 * 60.00502 * 17 15 13 19 19 H 1.48506 * 109.46865 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47267 * 300.00432 * 17 15 13 21 21 S 1.75823 * 125.10907 * 0.02562 * 3 2 1 22 22 H 1.09006 * 109.46813 * 300.00730 * 1 2 3 23 23 H 1.08999 * 109.46989 * 59.99914 * 1 2 3 24 24 H 1.08990 * 109.47387 * 180.02562 * 1 2 3 25 25 H 1.08005 * 122.57161 * 0.02562 * 4 3 2 26 26 H 1.07994 * 122.69236 * 180.29388 * 5 4 3 27 27 H 1.07998 * 119.99733 * 359.71672 * 7 6 5 28 28 H 1.08004 * 119.99933 * 359.97438 * 8 7 6 29 29 H 0.97005 * 120.00161 * 359.71910 * 11 9 8 30 30 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 31 31 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 32 32 H 0.97005 * 119.99648 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7351 0.0000 4 6 3.3513 2.3140 -0.0005 5 6 3.3452 3.6811 -0.0064 6 6 2.0956 4.2470 0.0001 7 6 1.8306 5.6302 0.0002 8 6 0.5439 6.0770 0.0013 9 6 0.2787 7.4613 0.0020 10 8 1.2006 8.2582 0.0020 11 7 -0.9944 7.9035 0.0037 12 6 -1.2701 9.3423 0.0049 13 6 -2.7601 9.5683 -0.0002 14 1 -3.4343 8.7246 -0.0045 15 6 -3.2626 10.8523 0.0005 16 7 -2.4416 11.8797 0.0051 17 14 -5.1095 11.1324 -0.0067 18 1 -5.7089 10.5119 1.2021 19 1 -5.3889 12.5909 -0.0040 20 1 -5.6988 10.5171 -1.2229 21 16 0.8752 2.9808 0.0006 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 4.2640 1.7365 -0.0014 26 1 4.2515 4.2684 -0.0122 27 1 2.6476 6.3365 -0.0005 28 1 -0.2731 5.3706 0.0017 29 1 -1.7282 7.2690 0.0003 30 1 -0.8371 9.7944 0.8972 31 1 -0.8305 9.7973 -0.8827 32 1 -2.7952 12.7830 0.0052 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261842071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = 4.611700 kcal Electronic energy + Delta-G solvation = -16168.424103 eV Core-core repulsion = 13347.077762 eV Total energy + Delta-G solvation = -2821.346340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.12239 -37.90505 -34.39128 -33.72629 -32.32774 -29.82376 -29.07281 -27.26159 -25.15773 -23.08891 -21.44355 -20.26942 -19.37092 -17.85615 -17.21290 -16.22908 -15.80300 -15.33060 -15.08492 -14.47558 -14.37986 -14.29194 -13.96970 -13.55414 -13.40640 -13.10933 -12.45883 -12.44429 -12.32402 -11.94598 -11.88904 -11.21168 -10.99624 -10.92669 -10.78664 -10.72361 -10.32008 -9.41631 -9.20365 -9.00760 -8.80296 -8.72980 -7.89915 -7.41785 -6.16610 -4.23690 -0.06771 0.96906 1.01928 1.62779 1.65802 2.05024 2.67588 3.25122 3.29825 3.31408 4.00202 4.17673 4.40140 4.58683 4.59337 4.88151 5.06414 5.14695 5.17668 5.19371 5.20658 5.56930 5.73830 5.89331 6.01878 6.34441 6.37591 7.31830 7.42570 7.52037 7.66618 7.96895 8.61205 8.77028 9.08222 9.42727 10.93627 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.030488 B = 0.002878 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.185600 B = 9727.762076 C =10625.492447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S -0.041 6.041 3 C -0.218 4.218 4 C -0.114 4.114 5 C -0.098 4.098 6 C -0.165 4.165 7 C -0.009 4.009 8 C -0.194 4.194 9 C 0.528 3.472 10 O -0.562 6.562 11 N -0.705 5.705 12 C 0.248 3.752 13 C -0.545 4.545 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 S 0.161 5.839 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.145 0.855 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.116 0.884 29 H 0.391 0.609 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -24.693 -0.023 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.197 5.803 3 C -0.448 4.448 4 C -0.151 4.151 5 C -0.130 4.130 6 C -0.286 4.286 7 C -0.031 4.031 8 C -0.218 4.218 9 C 0.317 3.683 10 O -0.445 6.445 11 N -0.352 5.352 12 C 0.127 3.873 13 C -0.583 4.583 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 S 0.425 5.575 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.132 0.868 25 H 0.162 0.838 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.134 0.866 29 H 0.224 0.776 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.084 -24.979 -0.019 25.964 hybrid contribution -0.761 1.046 -0.007 1.294 sum 6.324 -23.932 -0.026 24.753 Atomic orbital electron populations 1.23778 0.95173 1.07760 1.06588 1.85388 1.06051 0.96828 1.91984 1.26926 1.00913 1.01514 1.15457 1.19961 0.96251 0.94190 1.04683 1.20683 0.97166 0.93986 1.01131 1.22402 0.96234 0.97050 1.12887 1.20660 0.98046 0.91305 0.93080 1.22285 0.96879 0.96754 1.05900 1.16796 0.84123 0.88456 0.78930 1.90817 1.44136 1.57754 1.51778 1.46455 1.06014 1.11487 1.71233 1.19126 0.96050 0.74235 0.97860 1.21194 0.91010 0.92717 1.53400 0.91955 1.24954 0.98640 0.95734 0.94676 1.69967 1.34799 0.98738 1.48771 0.86469 0.84463 0.77251 0.78689 1.20059 1.21043 1.20055 1.84172 1.07749 0.94303 1.71288 0.89197 0.89195 0.86836 0.83754 0.83176 0.83313 0.86571 0.77645 0.95352 0.95349 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.47 101.05 0.96 0.00 16 2 S -0.04 -0.33 22.88 -107.50 -2.46 -2.79 16 3 C -0.22 -2.17 6.70 30.07 0.20 -1.97 16 4 C -0.11 -1.11 10.15 -40.79 -0.41 -1.52 16 5 C -0.10 -1.00 10.12 -40.52 -0.41 -1.41 16 6 C -0.16 -1.97 6.18 -38.98 -0.24 -2.21 16 7 C -0.01 -0.12 9.34 -39.33 -0.37 -0.49 16 8 C -0.19 -3.04 9.28 -39.29 -0.36 -3.40 16 9 C 0.53 10.95 7.54 -15.24 -0.11 10.84 16 10 O -0.56 -13.79 16.11 5.05 0.08 -13.71 16 11 N -0.70 -15.27 5.54 -64.59 -0.36 -15.63 16 12 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 13 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 21 S 0.16 1.67 20.38 -107.50 -2.19 -0.52 16 22 H 0.09 0.52 8.00 -51.91 -0.42 0.11 16 23 H 0.09 0.52 8.00 -51.92 -0.42 0.11 16 24 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 26 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 27 H 0.15 2.14 7.46 -52.49 -0.39 1.74 16 28 H 0.12 1.52 7.01 -52.48 -0.37 1.16 16 29 H 0.39 7.23 8.28 -40.82 -0.34 6.89 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -32.50 313.17 -9.26 -41.77 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.57 Total: 2.86 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.20 Total: -7.07 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.38 Total: -41.13 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.08 Total: -13.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -4.65 Total: -3.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.50 -9.26 -41.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261842071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.379 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds