Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76193 * 100.00321 * 2 1 4 4 C 1.36414 * 125.11170 * 180.02562 * 3 2 1 5 5 C 1.36717 * 114.85466 * 179.72107 * 4 3 2 6 6 C 1.37181 * 114.61251 * 0.50568 * 5 4 3 7 7 C 1.40835 * 125.20659 * 179.78821 * 6 5 4 8 8 C 1.36205 * 119.99878 * 179.72200 * 7 6 5 9 9 C 1.40945 * 119.99817 * 179.97438 * 8 7 6 10 10 O 1.21859 * 119.99677 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99787 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99969 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47148 * 179.72251 * 12 11 9 14 14 H 1.08002 * 120.00318 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99922 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99824 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99920 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46763 * 60.00502 * 17 15 13 19 19 H 1.48506 * 109.46865 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47267 * 300.00432 * 17 15 13 21 21 S 1.75823 * 125.10907 * 0.02562 * 3 2 1 22 22 H 1.09006 * 109.46813 * 300.00730 * 1 2 3 23 23 H 1.08999 * 109.46989 * 59.99914 * 1 2 3 24 24 H 1.08990 * 109.47387 * 180.02562 * 1 2 3 25 25 H 1.08005 * 122.57161 * 0.02562 * 4 3 2 26 26 H 1.07994 * 122.69236 * 180.29388 * 5 4 3 27 27 H 1.07998 * 119.99733 * 359.71672 * 7 6 5 28 28 H 1.08004 * 119.99933 * 359.97438 * 8 7 6 29 29 H 0.97005 * 120.00161 * 359.71910 * 11 9 8 30 30 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 31 31 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 32 32 H 0.97005 * 119.99648 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7351 0.0000 4 6 3.3513 2.3140 -0.0005 5 6 3.3452 3.6811 -0.0064 6 6 2.0956 4.2470 0.0001 7 6 1.8306 5.6302 0.0002 8 6 0.5439 6.0770 0.0013 9 6 0.2787 7.4613 0.0020 10 8 1.2006 8.2582 0.0020 11 7 -0.9944 7.9035 0.0037 12 6 -1.2701 9.3423 0.0049 13 6 -2.7601 9.5683 -0.0002 14 1 -3.4343 8.7246 -0.0045 15 6 -3.2626 10.8523 0.0005 16 7 -2.4416 11.8797 0.0051 17 14 -5.1095 11.1324 -0.0067 18 1 -5.7089 10.5119 1.2021 19 1 -5.3889 12.5909 -0.0040 20 1 -5.6988 10.5171 -1.2229 21 16 0.8752 2.9808 0.0006 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 4.2640 1.7365 -0.0014 26 1 4.2515 4.2684 -0.0122 27 1 2.6476 6.3365 -0.0005 28 1 -0.2731 5.3706 0.0017 29 1 -1.7282 7.2690 0.0003 30 1 -0.8371 9.7944 0.8972 31 1 -0.8305 9.7973 -0.8827 32 1 -2.7952 12.7830 0.0052 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261842071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = -16.485373 kcal Electronic energy + Delta-G solvation = -16169.338940 eV Core-core repulsion = 13347.077762 eV Total energy + Delta-G solvation = -2822.261178 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75222 -38.80154 -36.23623 -34.98350 -34.35492 -30.67301 -30.01714 -28.94779 -26.34327 -24.71769 -22.92186 -21.26784 -20.81416 -18.93496 -18.70749 -17.64270 -17.13006 -16.82090 -16.15387 -16.13465 -16.00880 -15.02090 -14.87192 -14.59117 -14.30136 -14.19751 -14.06237 -13.91906 -13.55286 -13.24545 -13.09652 -12.91829 -12.69153 -12.24391 -12.05881 -11.81056 -11.52510 -11.40043 -10.95432 -10.80304 -10.04013 -9.74165 -9.59818 -8.29762 -8.22665 -6.46893 -1.04580 0.17328 0.34551 0.62530 0.82692 1.40398 1.42436 1.47037 1.55265 1.73395 2.33702 2.49566 2.70395 3.04892 3.85609 4.03633 4.14999 4.16948 4.20587 4.33437 4.43603 4.78849 4.79915 4.94760 5.07750 5.11314 5.22638 5.31715 5.39287 5.46974 5.70268 5.83473 6.63234 6.88412 7.21896 7.45404 8.82481 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.030488 B = 0.002878 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.185600 B = 9727.762076 C =10625.492447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 S -0.037 6.037 3 C -0.209 4.209 4 C -0.132 4.132 5 C -0.069 4.069 6 C -0.216 4.216 7 C 0.037 3.963 8 C -0.235 4.235 9 C 0.532 3.468 10 O -0.613 6.613 11 N -0.704 5.704 12 C 0.266 3.734 13 C -0.559 4.559 14 H 0.083 0.917 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.987 3.013 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.261 1.261 21 S 0.177 5.823 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.136 0.864 25 H 0.166 0.834 26 H 0.170 0.830 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.408 0.592 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 -28.012 -0.033 28.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 S 0.202 5.798 3 C -0.440 4.440 4 C -0.168 4.168 5 C -0.102 4.102 6 C -0.336 4.336 7 C 0.014 3.986 8 C -0.258 4.258 9 C 0.324 3.676 10 O -0.499 6.499 11 N -0.352 5.352 12 C 0.143 3.857 13 C -0.597 4.597 14 H 0.101 0.899 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.210 1.210 20 H -0.186 1.186 21 S 0.441 5.559 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.155 0.845 25 H 0.183 0.817 26 H 0.187 0.813 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.243 0.757 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.105 -28.364 -0.029 29.014 hybrid contribution -0.242 1.749 -0.004 1.765 sum 5.863 -26.616 -0.034 27.254 Atomic orbital electron populations 1.23929 0.93139 1.09434 1.06898 1.85481 1.08325 0.95018 1.90961 1.27401 1.01130 1.02731 1.12723 1.20233 0.97094 0.94069 1.05413 1.21033 0.97271 0.94569 0.97279 1.22294 0.97690 0.96343 1.17311 1.20692 0.97059 0.92480 0.88321 1.21867 0.98448 0.93788 1.11711 1.17484 0.82898 0.90278 0.76940 1.90776 1.45318 1.59578 1.54253 1.46160 1.07344 1.09533 1.72212 1.18560 0.96023 0.76977 0.94176 1.21593 0.91148 0.93751 1.53206 0.89851 1.26096 1.04511 0.95275 0.93746 1.70137 1.37600 0.99400 1.49798 0.85183 0.77208 0.77140 0.79534 1.18604 1.20968 1.18599 1.84088 1.07281 0.93702 1.70837 0.88875 0.88872 0.84542 0.81650 0.81304 0.84281 0.84053 0.75660 0.99339 0.99346 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.47 113.37 1.07 -0.33 16 2 S -0.04 -0.49 22.88 -56.49 -1.29 -1.79 16 3 C -0.21 -3.56 6.70 67.39 0.45 -3.11 16 4 C -0.13 -2.15 10.15 21.49 0.22 -1.94 16 5 C -0.07 -1.24 10.12 21.66 0.22 -1.02 16 6 C -0.22 -4.80 6.18 22.66 0.14 -4.66 16 7 C 0.04 1.02 9.34 22.43 0.21 1.23 16 8 C -0.23 -7.43 9.28 22.46 0.21 -7.23 16 9 C 0.53 23.10 7.54 84.91 0.64 23.74 16 10 O -0.61 -32.01 16.11 -4.86 -0.08 -32.08 16 11 N -0.70 -31.82 5.54 -476.43 -2.64 -34.45 16 12 C 0.27 15.14 5.43 85.63 0.46 15.61 16 13 C -0.56 -31.20 9.28 25.60 0.24 -30.96 16 14 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 15 C 0.00 0.19 5.46 84.66 0.46 0.65 16 16 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 17 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 21 S 0.18 3.29 20.38 -56.49 -1.15 2.14 16 22 H 0.09 0.79 8.00 -2.39 -0.02 0.77 16 23 H 0.09 0.79 8.00 -2.40 -0.02 0.77 16 24 H 0.14 0.57 8.14 -2.40 -0.02 0.55 16 25 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 26 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 27 H 0.14 4.07 7.46 -2.91 -0.02 4.05 16 28 H 0.14 3.63 7.01 -2.91 -0.02 3.61 16 29 H 0.41 15.30 8.28 -92.70 -0.77 14.53 16 30 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -73.67 313.17 1.85 -71.82 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.38 Total: 14.36 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.32 Total: -8.02 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -2.35 Total: -91.20 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.08 Total: -32.08 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.44 Total: 0.35 kcal Total: -73.67 1.85 -71.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261842071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.337 kcal (2) G-P(sol) polarization free energy of solvation -73.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds