Wall clock time and date at job start Tue Mar 31 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76205 * 99.99899 * 2 1 4 4 C 1.36407 * 125.11074 * 179.97438 * 3 2 1 5 5 C 1.36723 * 114.84926 * 179.97438 * 4 3 2 6 6 C 1.37176 * 114.61423 * 359.97438 * 5 4 3 7 7 C 1.40844 * 125.20525 * 179.97438 * 6 5 4 8 8 C 1.36199 * 120.00132 * 224.97488 * 7 6 5 9 9 C 1.40947 * 119.99723 * 10.31684 * 8 7 6 10 10 O 1.21860 * 120.00455 * 6.82698 * 9 8 7 11 11 N 1.34773 * 119.99653 * 186.82364 * 9 8 7 12 12 C 1.46496 * 120.00015 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.47313 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99993 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00077 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00027 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00167 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47247 * 90.00081 * 17 15 13 19 19 H 1.48506 * 109.47122 * 210.00586 * 17 15 13 20 20 H 1.48499 * 109.46874 * 329.99968 * 17 15 13 21 21 S 1.75826 * 125.10520 * 0.28426 * 3 2 1 22 22 H 1.08994 * 109.47276 * 299.99488 * 1 2 3 23 23 H 1.09000 * 109.47314 * 59.99938 * 1 2 3 24 24 H 1.09002 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.07992 * 122.57553 * 359.96457 * 4 3 2 26 26 H 1.07998 * 122.69075 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.99497 * 44.97586 * 7 6 5 28 28 H 1.07994 * 119.99478 * 190.31463 * 8 7 6 29 29 H 0.97008 * 120.00245 * 359.97438 * 11 9 8 30 30 H 1.09002 * 109.47112 * 299.99550 * 12 11 9 31 31 H 1.09002 * 109.47367 * 60.00200 * 12 11 9 32 32 H 0.97000 * 120.00008 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.3511 2.3142 0.0005 5 6 3.3448 3.6814 -0.0002 6 6 2.0951 4.2470 -0.0018 7 6 1.8299 5.6303 -0.0022 8 6 0.8811 6.1420 0.8302 9 6 0.3199 5.3346 1.8400 10 8 0.7689 4.2213 2.0499 11 7 -0.7134 5.7937 2.5734 12 6 -1.2964 4.9547 3.6233 13 6 -2.4272 5.6960 4.2887 14 1 -2.6856 6.6926 3.9624 15 6 -3.1314 5.1024 5.3147 16 7 -4.1187 5.7491 5.8950 17 14 -2.6842 3.3789 5.8795 18 1 -1.6663 3.4598 6.9577 19 1 -3.8982 2.6963 6.3950 20 1 -2.1328 2.6103 4.7348 21 16 0.8749 2.9808 0.0071 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.2637 1.7369 0.0015 26 1 4.2510 4.2689 0.0005 27 1 2.3789 6.2851 -0.6627 28 1 0.5590 7.1665 0.7165 29 1 -1.0706 6.6801 2.4066 30 1 -1.6754 4.0326 3.1829 31 1 -0.5330 4.7167 4.3640 32 1 -4.6143 5.3313 6.6166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261842072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:18 Heat of formation + Delta-G solvation = 25.853901 kcal Electronic energy + Delta-G solvation = -17184.882407 eV Core-core repulsion = 14364.457198 eV Total energy + Delta-G solvation = -2820.425209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.46846 -37.36689 -34.53216 -33.40845 -32.39059 -29.51592 -28.93328 -27.60225 -24.77964 -22.93518 -21.21870 -19.76160 -19.70299 -17.99813 -16.71025 -16.13942 -15.81836 -15.32835 -14.86911 -14.54620 -14.19679 -13.92637 -13.77328 -13.58199 -13.07342 -12.83575 -12.63563 -12.40023 -12.23498 -12.01717 -11.91455 -11.11031 -11.01753 -10.80614 -10.31517 -10.13156 -9.98160 -9.52019 -9.23795 -8.92973 -8.78467 -8.26186 -7.49778 -7.12342 -6.23871 -4.26066 0.36040 1.45892 1.49968 1.81006 2.27511 2.50567 2.90383 3.24086 3.31016 3.38417 3.85949 4.19390 4.31109 4.91944 4.97579 5.01735 5.11570 5.27894 5.40775 5.53247 5.57475 5.67913 5.93427 6.13929 6.24056 6.47850 6.61066 6.82188 7.05116 7.21798 7.37272 8.11882 8.49898 8.72808 8.91251 9.36407 10.88161 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.005322 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.153678 B = 5259.576961 C = 6453.473641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 S -0.056 6.056 3 C -0.233 4.233 4 C -0.127 4.127 5 C -0.104 4.104 6 C -0.179 4.179 7 C -0.003 4.003 8 C -0.208 4.208 9 C 0.512 3.488 10 O -0.544 6.544 11 N -0.696 5.696 12 C 0.221 3.779 13 C -0.544 4.544 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.892 5.892 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 S 0.260 5.740 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.134 0.866 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.132 0.868 29 H 0.396 0.604 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.606 -5.415 -15.203 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 S 0.181 5.819 3 C -0.464 4.464 4 C -0.164 4.164 5 C -0.136 4.136 6 C -0.301 4.301 7 C -0.025 4.025 8 C -0.232 4.232 9 C 0.301 3.699 10 O -0.427 6.427 11 N -0.343 5.343 12 C 0.098 3.902 13 C -0.582 4.582 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.530 5.530 17 Si 0.702 3.298 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.186 1.186 21 S 0.529 5.471 22 H 0.110 0.890 23 H 0.104 0.896 24 H 0.129 0.871 25 H 0.152 0.848 26 H 0.155 0.845 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.230 0.770 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.797 -7.314 -14.869 19.778 hybrid contribution 0.624 0.933 0.614 1.279 sum 11.421 -6.381 -14.256 19.349 Atomic orbital electron populations 1.23737 0.95302 1.07445 1.06571 1.85123 1.06023 0.98130 1.92593 1.26978 1.01959 1.01374 1.16121 1.19702 0.95831 0.94082 1.06818 1.20312 0.96366 0.93823 1.03099 1.22177 0.97066 0.97567 1.13293 1.20571 0.94237 0.91784 0.95858 1.22389 1.01067 1.01639 0.98119 1.17182 0.81508 0.87190 0.84063 1.90959 1.62189 1.20281 1.69288 1.46233 1.32501 1.19877 1.35730 1.19470 0.93500 0.91334 0.85872 1.21106 1.14999 1.03673 1.18414 0.90278 1.24791 0.94346 0.97901 0.95528 1.69882 1.20794 1.37946 1.24339 0.86834 0.78310 0.84703 0.79938 1.19837 1.20880 1.18552 1.83977 1.06253 0.92460 1.64449 0.89014 0.89606 0.87101 0.84788 0.84477 0.84376 0.84988 0.77043 0.95732 0.96100 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.47 101.05 0.96 -0.82 16 2 S -0.06 -0.72 22.88 -107.50 -2.46 -3.18 16 3 C -0.23 -3.48 6.70 30.07 0.20 -3.27 16 4 C -0.13 -1.78 10.15 -40.79 -0.41 -2.19 16 5 C -0.10 -1.41 10.12 -40.52 -0.41 -1.82 16 6 C -0.18 -2.65 4.59 -38.98 -0.18 -2.82 16 7 C 0.00 -0.03 9.86 -39.33 -0.39 -0.42 16 8 C -0.21 -2.92 9.80 -39.29 -0.39 -3.31 16 9 C 0.51 9.62 7.06 -15.24 -0.11 9.51 16 10 O -0.54 -11.67 11.58 5.05 0.06 -11.61 16 11 N -0.70 -14.03 5.54 -64.59 -0.36 -14.39 16 12 C 0.22 5.39 4.50 -5.19 -0.02 5.37 16 13 C -0.54 -14.88 9.83 -34.44 -0.34 -15.22 16 14 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 16 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 17 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 21 S 0.26 4.08 17.96 -107.50 -1.93 2.15 16 22 H 0.09 1.16 7.99 -51.92 -0.41 0.74 16 23 H 0.09 0.87 8.00 -51.92 -0.42 0.45 16 24 H 0.11 0.94 8.14 -51.91 -0.42 0.52 16 25 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 26 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 27 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.40 7.04 8.28 -40.82 -0.34 6.71 16 30 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 31 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -32.18 303.25 -8.83 -41.00 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.63 Total: 3.25 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.18 Total: -12.88 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.42 Total: -40.07 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.06 Total: -11.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -4.39 Total: -1.02 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.18 -8.83 -41.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261842072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.859 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds