Wall clock time and date at job start Tue Mar 31 2020 06:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34851 * 117.00266 * 2 1 4 4 O 1.21575 * 120.00112 * 359.97438 * 3 2 1 5 5 C 1.46805 * 120.00504 * 179.97438 * 3 2 1 6 6 S 1.75805 * 125.49343 * 6.13182 * 5 3 2 7 7 C 1.70522 * 91.79179 * 179.97438 * 6 5 3 8 8 C 1.33388 * 111.40460 * 359.72620 * 7 6 5 9 9 C 1.38130 * 125.50218 * 186.12694 * 5 3 2 10 10 C 1.47621 * 123.63081 * 0.02562 * 9 5 3 11 11 O 1.21574 * 119.99998 * 38.14025 * 10 9 5 12 12 N 1.34779 * 120.00188 * 218.13893 * 10 9 5 13 13 C 1.46494 * 120.00038 * 179.72053 * 12 10 9 14 14 H 1.09000 * 109.47350 * 35.27913 * 13 12 10 15 15 C 1.53000 * 109.47451 * 275.28003 * 13 12 10 16 16 C 1.50700 * 109.47136 * 155.27932 * 13 12 10 17 17 H 1.08002 * 120.00061 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00521 * 180.02562 * 16 13 12 19 19 N 1.31521 * 119.99498 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00641 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47288 * 89.99284 * 20 18 16 22 22 H 1.48498 * 109.47157 * 210.00080 * 20 18 16 23 23 H 1.48508 * 109.46925 * 329.99735 * 20 18 16 24 24 H 1.09004 * 109.47287 * 59.99972 * 1 2 3 25 25 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47066 * 300.00104 * 1 2 3 27 27 H 1.07997 * 124.30053 * 180.02562 * 7 6 5 28 28 H 1.07994 * 122.47329 * 180.25221 * 8 7 6 29 29 H 0.97004 * 120.00011 * 0.02562 * 12 10 9 30 30 H 1.09000 * 109.47157 * 60.00173 * 15 13 12 31 31 H 1.09000 * 109.47154 * 180.02562 * 15 13 12 32 32 H 1.08994 * 109.47209 * 299.99746 * 15 13 12 33 33 H 0.97003 * 119.99402 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0642 1.2015 0.0000 4 8 1.4021 2.2212 -0.0005 5 6 3.5302 1.2784 0.0006 6 16 4.6242 -0.0894 -0.1516 7 6 5.9915 0.9245 -0.0510 8 6 5.6399 2.2043 0.0817 9 6 4.2727 2.4370 0.1206 10 6 3.6757 3.7790 0.2679 11 8 2.6761 3.9289 0.9436 12 7 4.2387 4.8382 -0.3466 13 6 3.6427 6.1690 -0.2055 14 1 3.2289 6.2773 0.7971 15 6 2.5274 6.3406 -1.2387 16 6 4.7002 7.2192 -0.4287 17 1 5.7148 6.9248 -0.6528 18 6 4.3727 8.5560 -0.3457 19 7 3.1372 8.9145 -0.0722 20 14 5.6832 9.8578 -0.6230 21 1 5.7301 10.2139 -2.0639 22 1 5.3570 11.0666 0.1754 23 1 7.0047 9.3276 -0.2010 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 7.0126 0.5753 -0.0944 28 1 6.3658 3.0002 0.1576 29 1 5.0360 4.7186 -0.8860 30 1 1.7625 5.5810 -1.0772 31 1 2.0843 7.3310 -1.1339 32 1 2.9411 6.2324 -2.2412 33 1 2.9069 9.8549 -0.0135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263722594.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:09 Heat of formation + Delta-G solvation = -82.603672 kcal Electronic energy + Delta-G solvation = -19860.064652 eV Core-core repulsion = 16592.183498 eV Total energy + Delta-G solvation = -3267.881154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29173 -39.12078 -36.98721 -36.12088 -34.66822 -32.29089 -30.42377 -29.10438 -27.71003 -25.43549 -25.15731 -22.04122 -21.92872 -20.08185 -18.85825 -18.75623 -17.20289 -16.44201 -16.26292 -15.87719 -15.35215 -15.11537 -14.64718 -14.15269 -13.84009 -13.43898 -13.32048 -12.83602 -12.61525 -12.57264 -12.26375 -12.06084 -11.62030 -11.19693 -11.06509 -10.90937 -10.74019 -10.67022 -10.35118 -10.28664 -10.17957 -9.06841 -9.00853 -8.97945 -8.67374 -8.50706 -7.82226 -6.08195 -4.17602 0.21506 1.27634 1.71812 2.06937 2.64187 2.88436 3.26614 3.33161 3.35292 3.78879 4.12960 4.41251 4.79161 4.99572 5.10365 5.12037 5.18977 5.23787 5.39801 5.49649 5.84807 5.95603 6.07104 6.39185 6.91340 7.08389 7.23100 7.52375 7.61888 7.74050 7.87451 7.98072 8.20336 8.70270 8.82460 9.17417 9.49692 10.97769 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024284 B = 0.004637 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.736910 B = 6037.094394 C = 7027.512491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.365 6.365 3 C 0.519 3.481 4 O -0.441 6.441 5 C -0.216 4.216 6 S 0.250 5.750 7 C -0.236 4.236 8 C -0.128 4.128 9 C -0.050 4.050 10 C 0.550 3.450 11 O -0.510 6.510 12 N -0.700 5.700 13 C 0.267 3.733 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.175 0.825 28 H 0.156 0.844 29 H 0.388 0.612 30 H 0.018 0.982 31 H 0.089 0.911 32 H 0.025 0.975 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -19.756 -1.820 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.283 6.283 3 C 0.359 3.641 4 O -0.325 6.325 5 C -0.336 4.336 6 S 0.519 5.481 7 C -0.374 4.374 8 C -0.158 4.158 9 C -0.069 4.069 10 C 0.331 3.669 11 O -0.386 6.386 12 N -0.349 5.349 13 C 0.165 3.835 14 H 0.067 0.933 15 C -0.206 4.206 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.192 0.808 28 H 0.173 0.827 29 H 0.220 0.780 30 H 0.037 0.963 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.948 -20.709 -1.460 20.852 hybrid contribution 1.271 2.275 -0.275 2.620 sum 3.218 -18.435 -1.736 18.794 Atomic orbital electron populations 1.23240 0.75753 1.03393 1.02964 1.86509 1.23716 1.32553 1.85525 1.19663 0.87044 0.82114 0.75306 1.91100 1.64979 1.34864 1.41564 1.23761 0.94410 0.97693 1.17773 1.83005 0.92586 1.07080 1.65439 1.25273 1.05071 0.98230 1.08811 1.20093 0.94613 0.97523 1.03599 1.19993 0.93051 0.94881 0.98961 1.17577 0.84382 0.82961 0.81957 1.90825 1.23616 1.84556 1.39591 1.46422 1.29880 1.09052 1.49539 1.18760 0.91964 0.75979 0.96753 0.93259 1.22069 0.98293 1.02423 0.97803 1.21210 0.95128 0.90720 1.50078 0.92067 1.24890 0.95629 0.98463 0.94737 1.69921 1.17439 1.17004 1.47643 0.86444 0.81541 0.80921 0.78145 1.20579 1.21093 1.19869 0.91794 0.88124 0.91652 0.80767 0.82688 0.77965 0.96290 0.89203 0.95604 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.07 10.44 -40.91 -0.43 -5.49 16 3 C 0.52 9.07 7.87 34.19 0.27 9.34 16 4 O -0.44 -9.58 13.41 -27.26 -0.37 -9.95 16 5 C -0.22 -3.43 6.50 -36.16 -0.23 -3.66 16 6 S 0.25 2.61 22.92 -107.50 -2.46 0.15 16 7 C -0.24 -2.33 10.87 29.04 0.32 -2.02 16 8 C -0.13 -1.65 9.64 -41.09 -0.40 -2.04 16 9 C -0.05 -0.85 5.75 -105.92 -0.61 -1.46 16 10 C 0.55 12.14 7.03 -12.43 -0.09 12.05 16 11 O -0.51 -13.42 13.91 -18.54 -0.26 -13.67 16 12 N -0.70 -15.45 5.03 -55.95 -0.28 -15.73 16 13 C 0.27 7.06 2.56 -69.09 -0.18 6.89 16 14 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 15 C -0.15 -3.88 9.26 37.16 0.34 -3.53 16 16 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 19 N -0.88 -25.34 11.32 55.43 0.63 -24.72 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 28 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.39 7.33 8.23 -40.82 -0.34 6.99 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -34.33 306.71 -7.01 -41.35 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.54 Total: 3.53 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 0.10 Total: 4.13 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.35 Total: -40.45 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.05 Total: -29.12 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.46 Total: 0.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.33 -7.01 -41.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263722594.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.256 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds