Wall clock time and date at job start Tue Mar 31 2020 06:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34853 * 117.00129 * 2 1 4 4 O 1.21574 * 120.00054 * 0.02562 * 3 2 1 5 5 C 1.46803 * 120.00225 * 179.97438 * 3 2 1 6 6 S 1.75801 * 125.49835 * 6.53200 * 5 3 2 7 7 C 1.70518 * 91.79216 * 180.18914 * 6 5 3 8 8 C 1.33383 * 111.40522 * 359.82238 * 7 6 5 9 9 C 1.38133 * 125.49946 * 186.39779 * 5 3 2 10 10 C 1.47626 * 123.63153 * 0.02562 * 9 5 3 11 11 O 1.21578 * 119.99608 * 353.52881 * 10 9 5 12 12 N 1.34770 * 120.00205 * 173.52817 * 10 9 5 13 13 C 1.46508 * 120.00077 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46699 * 324.99933 * 13 12 10 15 15 C 1.52993 * 109.47043 * 85.00069 * 13 12 10 16 16 C 1.50699 * 109.46922 * 205.00338 * 13 12 10 17 17 H 1.07995 * 120.00424 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99662 * 180.02562 * 16 13 12 19 19 N 1.31511 * 119.99872 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99714 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47338 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47042 * 120.00298 * 20 18 16 23 23 H 1.48501 * 109.47296 * 239.99789 * 20 18 16 24 24 H 1.09000 * 109.47276 * 299.99859 * 1 2 3 25 25 H 1.08999 * 109.47077 * 60.00254 * 1 2 3 26 26 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.07997 * 124.29961 * 179.82605 * 7 6 5 28 28 H 1.08000 * 122.47050 * 180.02562 * 8 7 6 29 29 H 0.97001 * 120.00605 * 359.97438 * 12 10 9 30 30 H 1.08999 * 109.46975 * 180.02562 * 15 13 12 31 31 H 1.09002 * 109.47102 * 299.99953 * 15 13 12 32 32 H 1.09001 * 109.47484 * 60.00345 * 15 13 12 33 33 H 0.97008 * 119.99613 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2015 0.0000 4 8 1.4021 2.2212 0.0005 5 6 3.5302 1.2784 0.0006 6 16 4.6242 -0.0882 -0.1615 7 6 5.9915 0.9243 -0.0480 8 6 5.6399 2.2026 0.0978 9 6 4.2727 2.4364 0.1259 10 6 3.6757 3.7778 0.2797 11 8 2.4724 3.9222 0.1835 12 7 4.4645 4.8423 0.5267 13 6 3.8720 6.1734 0.6798 14 1 3.0166 6.2694 0.0110 15 6 3.4121 6.3635 2.1265 16 6 4.8981 7.2224 0.3368 17 1 5.8922 6.9273 0.0353 18 6 4.5679 8.5592 0.4089 19 7 3.3574 8.9186 0.7765 20 14 5.8400 9.8596 -0.0156 21 1 7.1144 9.1996 -0.3969 22 1 5.3489 10.6802 -1.1517 23 1 6.0677 10.7329 1.1637 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 7.0126 0.5749 -0.0889 28 1 6.3660 2.9971 0.1869 29 1 5.4246 4.7271 0.6038 30 1 2.9708 7.3537 2.2404 31 1 2.6699 5.6047 2.3746 32 1 4.2675 6.2675 2.7953 33 1 3.1253 9.8591 0.8275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263722595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:13 Heat of formation + Delta-G solvation = -72.962319 kcal Electronic energy + Delta-G solvation = -19850.603729 eV Core-core repulsion = 16583.140655 eV Total energy + Delta-G solvation = -3267.463073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22368 -39.09346 -36.93700 -36.03245 -34.64926 -32.29274 -30.35326 -29.12942 -27.67753 -25.40011 -25.14557 -22.01921 -21.87138 -20.11225 -18.90768 -18.56015 -17.15219 -16.40084 -16.20189 -15.89206 -15.31981 -15.04870 -14.59630 -14.29219 -13.81011 -13.42972 -13.11242 -12.72751 -12.63171 -12.57628 -12.24306 -12.00786 -11.65314 -11.18059 -11.03744 -10.93414 -10.77662 -10.63150 -10.45090 -10.20514 -10.16733 -9.02636 -8.98702 -8.66555 -8.64634 -8.47506 -7.79959 -6.08882 -4.17986 0.23791 1.29237 1.73888 2.05354 2.71276 2.89948 3.25699 3.33257 3.35912 4.05687 4.12838 4.41382 4.77845 5.03349 5.10991 5.14742 5.22248 5.23419 5.35517 5.52511 5.90137 5.95134 6.06729 6.47553 6.88650 7.03470 7.20788 7.51702 7.61582 7.73884 7.95171 8.01922 8.19761 8.71467 8.83625 9.21928 9.49741 10.97188 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.004553 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.610090 B = 6148.710172 C = 7074.648933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.369 6.369 3 C 0.503 3.497 4 O -0.413 6.413 5 C -0.206 4.206 6 S 0.248 5.752 7 C -0.239 4.239 8 C -0.127 4.127 9 C -0.056 4.056 10 C 0.535 3.465 11 O -0.490 6.490 12 N -0.703 5.703 13 C 0.266 3.734 14 H 0.050 0.950 15 C -0.146 4.146 16 C -0.532 4.532 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.174 0.826 28 H 0.154 0.846 29 H 0.386 0.614 30 H 0.090 0.910 31 H 0.015 0.985 32 H 0.026 0.974 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 -19.648 -0.983 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.288 6.288 3 C 0.342 3.658 4 O -0.295 6.295 5 C -0.326 4.326 6 S 0.516 5.484 7 C -0.377 4.377 8 C -0.157 4.157 9 C -0.075 4.075 10 C 0.316 3.684 11 O -0.365 6.365 12 N -0.353 5.353 13 C 0.165 3.835 14 H 0.068 0.932 15 C -0.205 4.205 16 C -0.570 4.570 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.729 3.271 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.192 0.808 28 H 0.171 0.829 29 H 0.218 0.782 30 H 0.109 0.891 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.724 -20.594 -1.204 20.701 hybrid contribution 1.417 2.280 0.046 2.685 sum 3.142 -18.314 -1.158 18.618 Atomic orbital electron populations 1.23201 0.75977 1.03237 1.02837 1.86510 1.23510 1.32981 1.85801 1.19787 0.87335 0.82217 0.76419 1.91250 1.64767 1.33608 1.39902 1.23868 0.94540 0.97674 1.16560 1.83023 0.92640 1.07306 1.65426 1.25244 1.05051 0.98297 1.09071 1.20097 0.94802 0.97405 1.03442 1.20052 0.92864 0.94835 0.99783 1.17755 0.87447 0.83271 0.79908 1.90999 1.12814 1.84281 1.48434 1.46442 1.09640 1.08852 1.70326 1.18757 0.94654 0.76085 0.94047 0.93212 1.22072 0.98297 1.02386 0.97763 1.21247 0.98068 0.90747 1.46982 0.92032 1.24891 0.95549 0.98477 0.94821 1.69923 1.18580 1.16901 1.46629 0.86395 0.81261 0.81369 0.78061 1.19752 1.20902 1.20903 0.91824 0.91859 0.88275 0.80837 0.82873 0.78168 0.89149 0.96596 0.95515 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.57 101.05 1.07 1.51 16 2 O -0.37 -5.16 10.44 -40.91 -0.43 -5.59 16 3 C 0.50 8.83 7.92 34.19 0.27 9.10 16 4 O -0.41 -9.02 12.38 -27.85 -0.34 -9.36 16 5 C -0.21 -3.27 6.51 -36.16 -0.24 -3.51 16 6 S 0.25 2.61 22.92 -107.50 -2.46 0.15 16 7 C -0.24 -2.39 10.87 29.04 0.32 -2.07 16 8 C -0.13 -1.63 9.62 -41.10 -0.40 -2.03 16 9 C -0.06 -0.96 5.89 -105.92 -0.62 -1.59 16 10 C 0.53 11.73 7.75 -12.43 -0.10 11.63 16 11 O -0.49 -12.78 12.20 -20.32 -0.25 -13.03 16 12 N -0.70 -15.35 5.04 -55.95 -0.28 -15.63 16 13 C 0.27 6.99 2.56 -69.08 -0.18 6.82 16 14 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 15 C -0.15 -3.78 9.26 37.15 0.34 -3.43 16 16 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 19 N -0.88 -25.28 11.32 55.43 0.63 -24.65 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.15 1.71 6.98 -52.49 -0.37 1.35 16 29 H 0.39 7.15 7.06 -40.82 -0.29 6.87 16 30 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -34.03 302.64 -6.96 -41.00 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.44 Total: 3.24 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.08 Total: 3.53 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.35 Total: -40.28 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -1.02 Total: -27.98 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.46 Total: 0.15 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.03 -6.96 -41.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263722595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.967 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds