Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 119.99715 * 2 1 4 4 H 1.48501 * 109.47153 * 269.99883 * 3 2 1 5 5 H 1.48500 * 109.47233 * 29.99807 * 3 2 1 6 6 H 1.48500 * 109.47156 * 149.99685 * 3 2 1 7 7 C 1.38798 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00056 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99650 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00268 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47407 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99838 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47289 * 179.97438 * 14 13 11 16 16 C 1.38147 * 119.99846 * 259.72066 * 15 14 13 17 17 C 1.38679 * 119.99866 * 179.76864 * 16 15 14 18 18 O 1.35984 * 120.00199 * 180.25702 * 17 16 15 19 19 C 1.38718 * 119.99570 * 0.53246 * 17 16 15 20 20 C 1.38103 * 120.00234 * 359.72310 * 19 17 16 21 21 C 1.38676 * 119.99611 * 80.00248 * 15 14 13 22 22 O 1.35978 * 120.00209 * 359.96921 * 21 15 14 23 23 H 0.96997 * 120.00534 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46878 * 59.99938 * 10 9 7 25 25 H 1.09001 * 109.47320 * 300.00410 * 10 9 7 26 26 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 27 27 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 28 28 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 29 29 H 1.08002 * 120.00562 * 0.02562 * 16 15 14 30 30 H 0.96706 * 113.99690 * 270.27640 * 18 17 16 31 31 H 1.08004 * 119.99844 * 179.70294 * 19 17 16 32 32 H 1.08000 * 119.99965 * 179.97438 * 20 19 17 33 33 H 0.96707 * 113.99661 * 90.00999 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2020 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5731 -3.2323 0.0008 12 8 6.3441 -2.2961 0.0014 13 7 6.0458 -4.4945 0.0001 14 6 7.4908 -4.7356 0.0006 15 6 7.7526 -6.2197 0.0002 16 6 8.0823 -6.8632 1.1773 17 6 8.3185 -8.2297 1.1779 18 8 8.6380 -8.8641 2.3375 19 6 8.2344 -8.9485 -0.0056 20 6 7.9099 -8.3043 -1.1832 21 6 7.6681 -6.9383 -1.1828 22 8 7.3485 -6.3040 -2.3423 23 1 -0.4851 0.8400 -0.0004 24 1 3.6441 -3.4313 -0.8894 25 1 3.6434 -3.4317 0.8906 26 1 5.4292 -5.2434 0.0000 27 1 7.9342 -4.2878 -0.8889 28 1 7.9334 -4.2892 0.8911 29 1 8.1522 -6.3028 2.0979 30 1 9.5872 -8.8958 2.5198 31 1 8.4230 -10.0120 -0.0060 32 1 7.8448 -8.8639 -2.1047 33 1 8.1128 -5.9691 -2.8310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001303223474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -99.203604 kcal Electronic energy + Delta-G solvation = -18752.296614 eV Core-core repulsion = 15483.695634 eV Total energy + Delta-G solvation = -3268.600981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64580 -39.11326 -38.26579 -36.01745 -34.68733 -32.41465 -31.87029 -29.69794 -28.88616 -26.01345 -25.51195 -23.08625 -21.95461 -20.45676 -18.78692 -18.62940 -17.76164 -16.80043 -16.40467 -16.36818 -15.69627 -15.26839 -15.10808 -14.92700 -14.32726 -13.82969 -13.59412 -13.43846 -13.21213 -12.98139 -12.86192 -12.75287 -12.04934 -11.80898 -11.34682 -11.24388 -10.98678 -10.70713 -10.56338 -9.86093 -9.69965 -9.29585 -8.99977 -8.94254 -8.81516 -8.47283 -6.88796 -6.26320 -3.97813 0.63749 0.77707 2.77172 2.99679 3.01236 3.34655 3.42384 3.52532 3.68434 3.81019 3.87471 4.27828 4.35552 4.42943 4.72821 4.78599 4.97128 5.12639 5.14999 5.26530 5.36871 5.48770 5.62791 5.74243 5.81708 5.92740 6.02723 6.06881 6.19808 6.51977 7.17018 7.32188 7.64670 7.96892 8.44862 8.51435 9.19811 10.83035 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034701 B = 0.003084 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.700446 B = 9077.966672 C = 9167.859349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.533 3.467 12 O -0.522 6.522 13 N -0.727 5.727 14 C 0.171 3.829 15 C -0.115 4.115 16 C -0.110 4.110 17 C 0.093 3.907 18 O -0.497 6.497 19 C -0.123 4.123 20 C -0.132 4.132 21 C 0.117 3.883 22 O -0.489 6.489 23 H 0.271 0.729 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.401 0.599 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.390 0.610 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.439 -19.067 -0.620 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.319 3.681 12 O -0.397 6.397 13 N -0.382 5.382 14 C 0.047 3.953 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.049 3.951 18 O -0.307 6.307 19 C -0.142 4.142 20 C -0.150 4.150 21 C 0.072 3.928 22 O -0.299 6.299 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.235 0.765 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.246 0.754 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 20.375 -17.585 -0.409 26.917 hybrid contribution -0.152 -0.657 -0.214 0.707 sum 20.223 -18.242 -0.623 27.242 Atomic orbital electron populations 1.69940 1.05925 1.27745 1.48178 1.24717 0.94451 0.98969 0.93209 0.86725 0.81891 0.83255 0.79915 1.19215 1.19973 1.15910 1.22329 0.88302 0.97555 1.58651 0.89381 1.84745 1.09251 1.00127 1.97431 1.23275 0.93954 1.04274 1.05898 1.20274 0.90604 0.82112 0.75125 1.90693 1.58753 1.42178 1.48100 1.45927 1.06688 1.08135 1.77402 1.19932 0.82732 0.89652 1.02999 1.20190 1.02217 0.96178 0.93036 1.21342 0.99871 0.93651 0.98055 1.18428 1.01062 0.90109 0.85502 1.84895 1.29651 1.78077 1.38039 1.21368 1.00799 1.00697 0.91345 1.21344 1.00658 0.94061 0.98945 1.18363 0.97946 0.90466 0.86069 1.84918 1.35888 1.75814 1.33302 0.91958 0.88417 0.88454 0.76475 0.90599 0.90707 0.84543 0.75394 0.84860 0.84669 0.75142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.94 13.97 55.49 0.78 -26.16 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.47 6.16 36.00 0.22 -2.25 16 11 C 0.53 9.76 7.85 -10.99 -0.09 9.67 16 12 O -0.52 -11.38 15.86 5.55 0.09 -11.29 16 13 N -0.73 -9.98 5.55 -61.47 -0.34 -10.32 16 14 C 0.17 1.95 5.46 -5.19 -0.03 1.93 16 15 C -0.12 -1.08 5.26 -104.49 -0.55 -1.63 16 16 C -0.11 -0.96 9.60 -39.45 -0.38 -1.34 16 17 C 0.09 0.76 6.70 -39.24 -0.26 0.50 16 18 O -0.50 -3.61 13.51 -19.69 -0.27 -3.88 16 19 C -0.12 -0.90 9.98 -39.45 -0.39 -1.29 16 20 C -0.13 -0.99 9.98 -39.45 -0.39 -1.39 16 21 C 0.12 1.04 6.68 -39.24 -0.26 0.77 16 22 O -0.49 -4.34 12.73 -19.67 -0.25 -4.59 16 23 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.10 1.85 8.14 -51.91 -0.42 1.43 16 25 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 26 H 0.40 4.86 8.46 -40.82 -0.35 4.51 16 27 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 28 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 29 H 0.14 1.10 8.03 -52.49 -0.42 0.68 16 30 H 0.39 0.88 9.06 45.56 0.41 1.30 16 31 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.39 1.77 9.06 45.56 0.41 2.19 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -36.87 311.28 -5.96 -42.83 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.03 Total: 4.32 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.92 Total: -7.26 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.43 Total: -36.48 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.43 Total: -19.76 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.87 -5.96 -42.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303223474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.372 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds