Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99552 * 2 1 4 4 H 1.48501 * 109.46737 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47371 * 299.99954 * 3 2 1 6 6 H 1.48498 * 109.46777 * 60.00557 * 3 2 1 7 7 C 1.38947 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00165 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99686 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00061 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99548 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46723 * 179.97438 * 12 10 9 14 14 C 1.34784 * 120.00049 * 180.02562 * 13 12 10 15 15 O 1.21552 * 119.99738 * 359.97438 * 14 13 12 16 16 C 1.47762 * 119.99846 * 180.02562 * 14 13 12 17 17 C 1.40019 * 120.56911 * 0.29044 * 16 14 13 18 18 C 1.38349 * 118.29987 * 180.24291 * 17 16 14 19 19 C 1.38357 * 119.34378 * 359.48665 * 18 17 16 20 20 N 1.31922 * 121.10446 * 0.25495 * 19 18 17 21 21 C 1.31827 * 121.86092 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 119.73817 * 179.97438 * 21 20 19 23 23 H 0.96993 * 120.00337 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00323 * 359.97438 * 9 7 2 25 25 H 1.08992 * 109.47354 * 60.00393 * 12 10 9 26 26 H 1.08996 * 109.47395 * 299.99610 * 12 10 9 27 27 H 0.97000 * 120.00349 * 359.97438 * 13 12 10 28 28 H 1.07993 * 120.84887 * 0.02562 * 17 16 14 29 29 H 1.08002 * 120.33128 * 179.76988 * 18 17 16 30 30 H 1.07997 * 119.44749 * 180.23369 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8892 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1960 -5.9764 -0.0027 14 6 1.7468 -7.2471 -0.0038 15 8 0.5517 -7.4693 -0.0039 16 6 2.7071 -8.3702 -0.0037 17 6 4.0861 -8.1279 0.0036 18 6 4.9429 -9.2141 -0.0018 19 6 4.4159 -10.4934 -0.0034 20 7 3.1120 -10.6932 -0.0048 21 6 2.2545 -9.6920 -0.0053 22 17 0.5494 -10.0184 -0.0078 23 1 -0.4850 0.8400 0.0004 24 1 0.3534 -2.3907 -0.0016 25 1 0.6177 -4.9205 -0.8924 26 1 0.6170 -4.9209 0.8875 27 1 3.1496 -5.7991 -0.0030 28 1 4.4711 -7.1189 0.0097 29 1 6.0126 -9.0650 -0.0002 30 1 5.0833 -11.3425 -0.0038 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322790239.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -58.562433 kcal Electronic energy + Delta-G solvation = -18758.675816 eV Core-core repulsion = 15386.253119 eV Total energy + Delta-G solvation = -3372.422697 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.75920 -40.56238 -39.66009 -37.63196 -36.27479 -35.43703 -33.88532 -33.34907 -32.30463 -29.38194 -26.68974 -25.40514 -24.47836 -21.88352 -21.41867 -20.14726 -19.37364 -18.18999 -17.95842 -17.34331 -16.85740 -16.55227 -16.46999 -15.88985 -15.87912 -15.51974 -15.14762 -15.01913 -14.37725 -13.87961 -13.59082 -13.55735 -13.49394 -12.91462 -12.75567 -12.44987 -12.39826 -12.10244 -11.57651 -11.24803 -11.15290 -10.58551 -10.53036 -10.33139 -10.10420 -10.02488 -8.50942 -6.01089 -0.59498 -0.05063 0.77305 1.35573 1.43862 1.57481 1.70517 1.84828 1.90755 2.30364 2.60655 3.09126 3.16618 3.34323 3.52657 3.60387 3.83422 4.10301 4.21676 4.33736 4.42624 4.46261 4.75368 4.94375 5.16461 5.37413 5.39096 5.91777 6.36031 6.48066 6.53736 7.01558 7.04129 7.44175 7.93577 8.66103 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.003339 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.309686 B = 8384.313626 C = 9168.477405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.122 3.878 13 N -0.699 5.699 14 C 0.555 3.445 15 O -0.547 6.547 16 C -0.187 4.187 17 C -0.032 4.032 18 C -0.156 4.156 19 C 0.142 3.858 20 N -0.505 5.505 21 C 0.203 3.797 22 Cl -0.014 7.014 23 H 0.279 0.721 24 H 0.399 0.601 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.413 0.587 28 H 0.165 0.835 29 H 0.194 0.806 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 -17.336 0.002 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.511 6.511 12 C -0.005 4.005 13 N -0.354 5.354 14 C 0.341 3.659 15 O -0.426 6.426 16 C -0.194 4.194 17 C -0.058 4.058 18 C -0.175 4.175 19 C -0.015 4.015 20 N -0.217 5.217 21 C 0.039 3.961 22 Cl 0.014 6.986 23 H 0.089 0.911 24 H 0.233 0.767 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.253 0.747 28 H 0.182 0.818 29 H 0.211 0.789 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.919 -18.170 0.001 19.821 hybrid contribution -0.051 1.809 0.000 1.810 sum 7.869 -16.361 0.001 18.155 Atomic orbital electron populations 1.69682 1.07048 1.29572 1.49354 1.26129 0.96505 1.02714 0.95805 0.84814 0.78229 0.76748 0.78220 1.19242 1.19759 1.19768 1.19785 0.93017 0.83465 1.50232 0.89375 1.41852 1.09624 1.04629 1.63318 1.20363 0.88133 0.85827 0.83626 1.90461 1.15008 1.87512 1.58076 1.20808 0.91551 0.83568 1.04588 1.45523 1.11547 1.04107 1.74189 1.18161 0.88132 0.82663 0.76908 1.90844 1.16717 1.84713 1.50323 1.20502 0.95754 0.92596 1.10548 1.22222 0.90033 1.02682 0.90831 1.22700 1.03760 0.91765 0.99307 1.23768 0.89063 0.99136 0.89484 1.67231 1.05252 1.34325 1.14889 1.21859 0.88884 0.88855 0.96545 1.98443 1.08441 1.95949 1.95719 0.91103 0.76709 0.88485 0.88470 0.74717 0.81756 0.78860 0.77121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.04 13.05 21.66 0.28 -47.75 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 40.92 29.55 68.60 2.03 42.94 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.34 -18.04 9.68 84.04 0.81 -17.23 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -27.28 5.29 -306.98 -1.62 -28.90 16 10 C 0.43 19.19 7.85 87.66 0.69 19.87 16 11 O -0.62 -30.51 15.24 -3.07 -0.05 -30.56 16 12 C 0.12 4.28 6.15 85.63 0.53 4.81 16 13 N -0.70 -21.87 5.48 -469.80 -2.58 -24.45 16 14 C 0.55 17.36 7.77 86.76 0.67 18.03 16 15 O -0.55 -20.01 14.00 -3.88 -0.05 -20.06 16 16 C -0.19 -4.79 5.89 -19.97 -0.12 -4.91 16 17 C -0.03 -0.55 9.65 22.73 0.22 -0.33 16 18 C -0.16 -1.70 10.10 22.32 0.23 -1.48 16 19 C 0.14 1.84 11.17 84.71 0.95 2.79 16 20 N -0.51 -11.24 10.33 -185.58 -1.92 -13.16 16 21 C 0.20 5.43 7.31 85.05 0.62 6.05 16 22 Cl -0.01 -0.42 26.20 -2.72 -0.07 -0.50 16 23 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 24 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 25 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 26 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.41 12.14 5.54 -92.71 -0.51 11.63 16 28 H 0.17 2.44 6.52 -2.91 -0.02 2.42 16 29 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 30 H 0.21 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -68.70 289.36 1.07 -67.64 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.02 Total: 27.28 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 5.07 Total: 27.51 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -5.83 Total: -114.26 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.10 Total: -50.62 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.07 Total: -0.50 kcal Total: -68.70 1.07 -67.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322790239.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.074 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds