Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 119.99964 * 2 1 4 4 H 1.48506 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47279 * 299.99773 * 3 2 1 6 6 H 1.48497 * 109.47468 * 59.99902 * 3 2 1 7 7 C 1.37883 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99641 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93967 * 309.66332 * 9 7 2 11 11 C 1.53939 * 113.74425 * 81.25316 * 9 7 2 12 12 N 1.47935 * 85.99585 * 138.00446 * 11 9 7 13 13 C 1.34770 * 134.50020 * 155.33740 * 12 11 9 14 14 O 1.21528 * 120.00002 * 180.02562 * 13 12 11 15 15 C 1.48091 * 120.00188 * 0.03267 * 13 12 11 16 16 C 1.39441 * 120.07776 * 179.72092 * 15 13 12 17 17 N 1.32082 * 119.88790 * 179.72994 * 16 15 13 18 18 C 1.32247 * 120.05934 * 0.54853 * 17 16 15 19 19 Cl 1.73593 * 119.92162 * 179.70682 * 18 17 16 20 20 C 1.38950 * 120.15772 * 359.73065 * 18 17 16 21 21 N 1.31738 * 120.10493 * 359.97380 * 20 18 17 22 22 C 1.47583 * 91.00485 * 335.36053 * 12 11 9 23 23 H 0.96996 * 120.00241 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00311 * 50.33748 * 10 9 7 25 25 H 1.08997 * 113.77317 * 252.35938 * 11 9 7 26 26 H 1.09004 * 113.76958 * 23.76220 * 11 9 7 27 27 H 1.07997 * 120.05094 * 0.02562 * 16 15 13 28 28 H 1.08004 * 119.94545 * 180.02562 * 20 18 17 29 29 H 1.08996 * 113.76772 * 270.33752 * 22 12 11 30 30 H 1.08991 * 113.86922 * 138.95154 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.2447 -2.5613 1.0132 11 6 0.7561 -2.9292 -1.3923 12 7 1.1905 -4.2912 -1.0120 13 6 0.8405 -5.5354 -1.3938 14 8 1.3843 -6.5001 -0.8933 15 6 -0.2067 -5.7270 -2.4232 16 6 -0.5659 -7.0135 -2.8236 17 7 -1.5041 -7.1802 -3.7382 18 6 -2.0942 -6.1286 -4.2813 19 17 -3.3214 -6.3517 -5.4886 20 6 -1.7338 -4.8455 -3.8882 21 7 -0.8029 -4.6720 -2.9723 22 6 2.1608 -3.7402 -0.0461 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3474 -1.7969 1.0268 25 1 -0.3213 -2.8309 -1.5254 26 1 1.3285 -2.4989 -2.2141 27 1 -0.0812 -7.8722 -2.3831 28 1 -2.2182 -3.9892 -4.3337 29 1 3.1449 -3.5476 -0.4734 30 1 2.2056 -4.2877 0.8952 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323020187.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = -17.637656 kcal Electronic energy + Delta-G solvation = -19558.631856 eV Core-core repulsion = 16187.983790 eV Total energy + Delta-G solvation = -3370.648066 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.55184 -40.98456 -39.09411 -38.03295 -36.00452 -35.56983 -34.12589 -32.86483 -30.43649 -27.57537 -26.99485 -26.30773 -25.59915 -22.24367 -20.58988 -19.48233 -19.13134 -18.62461 -18.17501 -17.32380 -16.95586 -16.90765 -16.07036 -15.98130 -15.86468 -15.06444 -14.72156 -14.40299 -14.08934 -13.80091 -13.40861 -13.32571 -13.13862 -12.80200 -12.73188 -12.64832 -12.43903 -12.22728 -12.16005 -11.71387 -11.14453 -10.68251 -10.57343 -10.52403 -10.14372 -9.63164 -8.24124 -6.40660 -1.05565 -0.32370 0.33834 1.43172 1.47328 1.52275 1.61844 1.71124 2.40527 2.43410 2.64188 2.89184 2.99070 3.05620 3.38497 3.66967 3.77287 4.20747 4.28034 4.42215 4.61279 4.72305 4.82766 4.91959 5.08337 5.26140 5.65941 5.75534 5.94660 6.19112 6.63706 6.65174 6.90533 7.32384 7.45260 8.82408 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.004487 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.235247 B = 6239.123642 C = 7119.425282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.035 3.965 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.214 3.786 10 O -0.586 6.586 11 C 0.112 3.888 12 N -0.613 5.613 13 C 0.578 3.422 14 O -0.573 6.573 15 C 0.028 3.972 16 C 0.132 3.868 17 N -0.443 5.443 18 C 0.142 3.858 19 Cl 0.017 6.983 20 C 0.081 3.919 21 N -0.404 5.404 22 C 0.114 3.886 23 H 0.275 0.725 24 H 0.387 0.613 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.203 0.797 28 H 0.218 0.782 29 H 0.110 0.890 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -6.355 -10.287 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.166 4.166 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.173 3.827 10 O -0.398 6.398 11 C -0.010 4.010 12 N -0.343 5.343 13 C 0.366 3.634 14 O -0.455 6.455 15 C -0.112 4.112 16 C -0.027 4.027 17 N -0.159 5.159 18 C -0.028 4.028 19 Cl 0.046 6.954 20 C -0.083 4.083 21 N -0.121 5.121 22 C -0.008 4.008 23 H 0.085 0.915 24 H 0.242 0.758 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.220 0.780 28 H 0.235 0.765 29 H 0.128 0.872 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.567 -7.513 -10.012 13.324 hybrid contribution -0.143 1.242 -0.138 1.258 sum -4.710 -6.271 -10.149 12.827 Atomic orbital electron populations 1.69471 1.07082 1.28803 1.50154 1.25710 0.95722 1.02461 0.92680 0.85371 0.79021 0.78793 0.77610 1.19157 1.20292 1.20877 1.21740 0.94182 0.90662 1.52752 0.90843 1.20197 0.85950 0.91856 0.84714 1.86038 1.47495 1.49739 1.56501 1.24119 1.00646 0.75805 1.00424 1.50182 1.38897 1.05165 1.40076 1.17551 0.82254 0.82120 0.81474 1.90728 1.57029 1.39899 1.57806 1.22105 0.98451 0.92062 0.98608 1.23871 0.90847 0.97453 0.90528 1.68060 1.06811 1.33163 1.07882 1.23476 0.93745 0.91601 0.93932 1.98446 1.48882 1.97649 1.50427 1.24313 0.93586 0.97276 0.93140 1.68709 1.05152 1.32650 1.05552 1.23589 0.93954 0.91773 0.91476 0.91504 0.75847 0.90741 0.89557 0.78022 0.76530 0.87236 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.13 11.20 21.45 0.24 -44.89 16 2 C 0.04 1.69 5.39 84.66 0.46 2.15 16 3 Si 0.97 38.49 29.54 68.60 2.03 40.52 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.56 -27.00 8.61 25.60 0.22 -26.78 16 8 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.21 10.04 1.40 -10.88 -0.02 10.03 16 10 O -0.59 -29.97 13.48 -148.98 -2.01 -31.97 16 11 C 0.11 4.77 7.03 86.41 0.61 5.37 16 12 N -0.61 -25.51 3.62 -842.50 -3.05 -28.55 16 13 C 0.58 22.99 8.04 86.86 0.70 23.69 16 14 O -0.57 -24.57 17.07 -3.80 -0.06 -24.63 16 15 C 0.03 0.91 6.75 41.87 0.28 1.19 16 16 C 0.13 3.67 10.77 84.95 0.92 4.59 16 17 N -0.44 -11.43 10.48 -184.95 -1.94 -13.36 16 18 C 0.14 3.21 7.30 84.80 0.62 3.83 16 19 Cl 0.02 0.31 29.13 -2.72 -0.08 0.23 16 20 C 0.08 1.88 11.01 84.88 0.93 2.81 16 21 N -0.40 -12.51 8.08 -184.23 -1.49 -14.00 16 22 C 0.11 4.79 8.23 86.49 0.71 5.50 16 23 H 0.28 12.83 8.31 -92.71 -0.77 12.06 16 24 H 0.39 20.10 6.60 -74.06 -0.49 19.61 16 25 H 0.07 3.26 7.21 -2.39 -0.02 3.24 16 26 H 0.09 3.54 8.09 -2.39 -0.02 3.53 16 27 H 0.20 4.99 7.65 -2.91 -0.02 4.97 16 28 H 0.22 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.11 4.13 8.09 -2.39 -0.02 4.11 16 30 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -57.26 288.40 -0.21 -57.47 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.72 Total: 26.83 kcal Atomic # 6 Polarization: 26.94 SS G_CDS: 5.43 Total: 32.38 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -6.23 Total: -100.81 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -2.07 Total: -56.61 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -57.26 -0.21 -57.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323020187.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.829 kcal (2) G-P(sol) polarization free energy of solvation -57.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds