Wall clock time and date at job start Tue Mar 31 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38356 * 127.15418 * 2 1 4 4 C 1.39778 * 126.56172 * 0.02562 * 3 2 1 5 5 H 1.07995 * 119.99928 * 0.26417 * 4 3 2 6 6 C 1.40083 * 119.99583 * 180.26720 * 4 3 2 7 7 N 1.30819 * 120.00168 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99562 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47269 * 119.99965 * 8 6 4 11 11 H 1.48509 * 109.46677 * 239.99320 * 8 6 4 12 12 N 1.33098 * 106.86794 * 180.22744 * 3 2 1 13 13 N 1.28511 * 109.74841 * 359.77341 * 12 3 2 14 14 C 1.32384 * 110.20415 * 0.02562 * 13 12 3 15 15 S 1.76206 * 126.25696 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99929 * 0.02562 * 15 14 13 17 17 C 1.50699 * 109.46881 * 180.02562 * 16 15 14 18 18 C 1.38129 * 123.88704 * 269.73104 * 17 16 15 19 19 N 1.30417 * 112.22871 * 179.85302 * 18 17 16 20 20 S 1.55997 * 108.39734 * 0.39015 * 19 18 17 21 21 N 1.30418 * 123.88871 * 90.02524 * 17 16 15 22 22 H 1.09001 * 109.46904 * 270.17377 * 1 2 3 23 23 H 1.09003 * 109.47048 * 30.17355 * 1 2 3 24 24 H 1.08995 * 109.47319 * 150.17217 * 1 2 3 25 25 H 0.96997 * 120.00016 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47216 * 300.00172 * 16 15 14 27 27 H 1.09001 * 109.46620 * 60.00275 * 16 15 14 28 28 H 1.08001 * 123.88046 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0053 6 6 2.8768 3.4568 -0.0052 7 7 4.1477 3.1466 -0.0105 8 14 2.3530 5.2499 -0.0038 9 1 0.8704 5.3325 0.0031 10 1 2.8924 5.9223 1.2054 11 1 2.8802 5.9204 -1.2196 12 7 3.5490 0.6413 -0.0051 13 7 3.5370 -0.6438 -0.0033 14 6 2.2904 -1.0893 0.0024 15 16 1.7873 -2.7780 0.0060 16 6 3.4058 -3.5882 0.0007 17 6 3.2190 -5.0836 0.0023 18 6 3.1330 -5.8477 1.1497 19 7 2.9695 -7.1148 0.8876 20 16 2.9414 -7.2974 -0.6614 21 7 3.1255 -5.8059 -1.0796 22 1 -0.3633 0.0031 1.0277 23 1 -0.3633 0.8884 -0.5165 24 1 -0.3634 -0.8915 -0.5111 25 1 4.8180 3.8476 -0.0141 26 1 3.9574 -3.2922 -0.8917 27 1 3.9640 -3.2904 0.8883 28 1 3.1924 -5.4422 2.1490 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327441050.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:11 Heat of formation + Delta-G solvation = 127.700696 kcal Electronic energy + Delta-G solvation = -16657.439558 eV Core-core repulsion = 13770.183165 eV Total energy + Delta-G solvation = -2887.256393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90884 -40.54739 -33.83848 -33.71916 -33.34677 -30.42834 -29.31523 -26.55785 -25.68829 -24.96000 -21.30724 -20.84665 -20.33917 -19.44044 -17.41537 -16.54070 -16.03886 -15.61193 -15.38456 -14.78937 -14.49340 -14.04960 -13.57504 -13.45281 -13.13673 -12.35298 -12.27170 -11.95359 -11.47897 -11.34298 -11.18132 -11.03043 -10.97496 -10.96102 -10.47348 -10.36353 -9.77596 -9.66747 -9.03127 -8.75072 -8.48234 -8.42689 -6.90933 -6.68395 -4.61350 0.52843 1.38595 1.54963 1.68511 2.43218 2.73758 2.88031 3.04846 3.09388 3.31725 3.84626 4.19600 4.32835 4.38295 4.77451 5.03034 5.28911 5.37305 5.52001 5.60136 5.85821 5.90840 6.01806 6.54507 6.71449 6.85644 7.20408 7.44286 7.83999 8.14700 8.66659 8.81659 10.24080 10.58642 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.053438 B = 0.003479 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.848166 B = 8046.319916 C = 8346.655639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.514 5.514 3 C 0.347 3.653 4 C -0.446 4.446 5 H 0.085 0.915 6 C 0.078 3.922 7 N -0.735 5.735 8 Si 0.921 3.079 9 H -0.261 1.261 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.332 5.332 13 N -0.284 5.284 14 C 0.042 3.958 15 S -0.031 6.031 16 C -0.013 4.013 17 C 0.077 3.923 18 C 0.052 3.948 19 N -0.573 5.573 20 S 0.667 5.333 21 N -0.555 5.555 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.279 0.721 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -13.165 0.580 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.217 5.217 3 C 0.103 3.897 4 C -0.486 4.486 5 H 0.103 0.897 6 C -0.148 4.148 7 N -0.359 5.359 8 Si 0.745 3.255 9 H -0.185 1.185 10 H -0.197 1.197 11 H -0.197 1.197 12 N -0.180 5.180 13 N -0.130 5.130 14 C -0.330 4.330 15 S 0.195 5.805 16 C -0.166 4.166 17 C -0.098 4.098 18 C -0.144 4.144 19 N -0.414 5.414 20 S 0.710 5.290 21 N -0.400 5.400 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.346 -15.418 -0.607 16.031 hybrid contribution -0.302 3.067 1.034 3.251 sum -4.648 -12.351 0.427 13.204 Atomic orbital electron populations 1.21502 0.78480 1.02730 1.01670 1.46013 1.06086 1.05220 1.64346 1.21638 0.84719 0.88429 0.94908 1.18150 0.94757 0.86408 1.49256 0.89696 1.25811 0.94348 1.01359 0.93287 1.70015 1.00723 1.34967 1.30231 0.86061 0.79853 0.80940 0.78661 1.18520 1.19708 1.19727 1.75459 1.15270 0.97744 1.29479 1.74526 1.15056 1.07724 1.15706 1.25239 0.91664 0.92429 1.23651 1.84562 1.08371 0.91751 1.95768 1.21648 0.99317 0.86569 1.09081 1.21880 1.02843 0.98101 0.86968 1.23755 1.01571 0.86652 1.02447 1.72410 1.23028 1.23752 1.22256 1.79011 1.49826 1.07434 0.92736 1.72199 1.22345 1.10402 1.35009 0.92485 0.90306 0.91570 0.90973 0.86797 0.86492 0.77521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.87 59.85 0.65 2.46 15 2 N -0.51 -12.20 3.26 -123.17 -0.40 -12.60 15 3 C 0.35 9.56 7.53 -154.81 -1.17 8.39 15 4 C -0.45 -11.62 9.04 -38.31 -0.35 -11.96 15 5 H 0.08 2.01 7.31 -52.49 -0.38 1.62 15 6 C 0.08 1.95 5.50 -17.29 -0.10 1.86 15 7 N -0.74 -19.94 11.94 55.56 0.66 -19.28 15 8 Si 0.92 18.25 29.56 -169.99 -5.03 13.23 15 9 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 10 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 11 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 12 N -0.33 -9.81 10.48 31.26 0.33 -9.48 15 13 N -0.28 -7.58 11.62 30.89 0.36 -7.22 15 14 C 0.04 0.98 8.09 -87.28 -0.71 0.28 15 15 S -0.03 -0.54 21.77 -107.50 -2.34 -2.88 15 16 C -0.01 -0.20 5.71 36.01 0.21 0.01 15 17 C 0.08 1.04 6.12 -83.23 -0.51 0.53 15 18 C 0.05 0.60 11.44 -18.19 -0.21 0.39 15 19 N -0.57 -6.78 11.45 18.94 0.22 -6.57 15 20 S 0.67 6.95 23.71 -107.50 -2.55 4.40 15 21 N -0.56 -7.57 11.45 22.70 0.26 -7.31 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.08 1.33 7.54 -51.93 -0.39 0.94 15 24 H 0.07 1.05 7.84 -51.93 -0.41 0.64 15 25 H 0.28 6.80 8.30 -40.82 -0.34 6.46 15 26 H 0.11 1.93 8.14 -51.92 -0.42 1.51 15 27 H 0.12 1.71 8.14 -51.92 -0.42 1.29 15 28 H 0.21 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 284.32 15.07 4.28 4.28 Total: -1.00 -33.15 284.32 -8.39 -41.53 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -2.01 Total: -0.06 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.17 Total: 1.95 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 1.43 Total: -62.47 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -4.89 Total: 1.52 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.15 -8.39 -41.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327441050.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.234 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds