Wall clock time and date at job start Tue Mar 31 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86794 * 119.99525 * 2 1 4 4 H 1.48498 * 109.47458 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.47379 * 29.99768 * 3 2 1 6 6 H 1.48504 * 109.47119 * 149.99934 * 3 2 1 7 7 C 1.38796 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99833 * 359.97438 * 7 2 1 9 9 S 1.76192 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00086 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.20823 * 119.99822 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99644 * 179.97438 * 11 10 9 14 14 C 1.45199 * 117.00038 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47576 * 180.02562 * 14 13 11 16 16 C 1.34322 * 126.44113 * 89.97185 * 15 14 13 17 17 N 1.34485 * 107.66970 * 180.02562 * 16 15 14 18 18 C 1.30258 * 108.69703 * 359.97438 * 17 16 15 19 19 C 1.50697 * 125.61890 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.49992 * 351.28003 * 19 18 17 21 21 C 1.53000 * 117.50034 * 59.93776 * 19 18 17 22 22 O 1.33969 * 108.75843 * 0.22867 * 18 17 16 23 23 H 0.96995 * 120.00505 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47177 * 60.00043 * 10 9 7 25 25 H 1.08994 * 109.47231 * 299.99669 * 10 9 7 26 26 H 1.09004 * 109.47135 * 60.00050 * 14 13 11 27 27 H 1.09008 * 109.46947 * 300.00619 * 14 13 11 28 28 H 1.08000 * 126.17279 * 0.05761 * 16 15 14 29 29 H 1.09002 * 115.54932 * 205.60840 * 19 18 17 30 30 H 1.09000 * 117.49996 * 215.00670 * 20 19 18 31 31 H 1.08999 * 117.49664 * 0.02562 * 20 19 18 32 32 H 1.09008 * 117.49673 * 359.97438 * 21 19 18 33 33 H 1.08999 * 117.49942 * 144.97208 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0014 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2323 0.0026 12 8 6.3412 -2.2995 0.0024 13 8 6.0440 -4.4893 0.0041 14 6 7.4867 -4.6530 0.0047 15 6 7.8258 -6.1213 0.0057 16 6 8.0052 -6.8995 -1.0744 17 7 8.2913 -8.1399 -0.6408 18 6 8.2913 -8.1373 0.6618 19 6 8.5658 -9.3295 1.5418 20 6 8.6691 -10.6980 0.8655 21 6 9.9279 -10.0121 1.4020 22 8 8.0015 -6.9015 1.0901 23 1 -0.4850 0.8400 -0.0004 24 1 3.6441 -3.4321 -0.8873 25 1 3.6435 -3.4309 0.8926 26 1 7.9054 -4.1824 0.8943 27 1 7.9059 -4.1841 -0.8857 28 1 7.9333 -6.5856 -2.1053 29 1 8.1214 -9.2918 2.5364 30 1 8.2926 -11.5607 1.4151 31 1 8.5389 -10.7360 -0.2160 32 1 10.6254 -9.5991 0.6731 33 1 10.3799 -10.4231 2.3046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330964140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:02 Heat of formation + Delta-G solvation = -33.105388 kcal Electronic energy + Delta-G solvation = -18433.285848 eV Core-core repulsion = 15167.551100 eV Total energy + Delta-G solvation = -3265.734747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.66517 -40.26870 -37.75842 -36.48323 -34.93420 -32.52146 -31.95422 -29.85286 -27.01390 -25.70506 -24.23300 -22.90993 -22.20864 -21.27557 -20.87792 -18.09321 -17.88797 -17.41879 -16.77073 -16.56237 -16.37810 -15.29841 -15.12402 -15.03742 -14.39528 -14.13468 -13.98899 -13.26581 -12.91257 -12.76702 -12.54329 -12.27220 -12.05642 -11.78667 -11.36844 -11.23460 -11.10530 -11.07913 -10.99996 -10.80272 -10.69712 -10.36304 -9.91326 -9.08479 -9.02397 -8.66425 -7.06574 -6.36186 -4.11199 0.88698 2.02203 2.23770 2.39760 2.55122 3.12200 3.27026 3.33981 3.42740 3.48179 3.64537 4.20657 4.25144 4.32062 4.43983 4.49927 4.64494 4.67468 4.89464 4.92652 5.02447 5.15468 5.19492 5.26190 5.44829 5.51143 5.59313 5.65503 5.69324 5.90135 5.97582 6.36678 7.38357 7.86094 7.88448 8.35366 9.08529 10.72803 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.049328 B = 0.002662 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.491094 B =10517.598941 C =10780.834248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.092 0.908 9 S -0.138 6.138 10 C -0.099 4.099 11 C 0.482 3.518 12 O -0.486 6.486 13 O -0.355 6.355 14 C 0.154 3.846 15 C -0.054 4.054 16 C -0.004 4.004 17 N -0.484 5.484 18 C 0.233 3.767 19 C -0.084 4.084 20 C -0.145 4.145 21 C -0.155 4.155 22 O -0.190 6.190 23 H 0.272 0.728 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.190 0.810 29 H 0.135 0.865 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.530 -18.375 1.791 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.110 0.890 9 S 0.088 5.912 10 C -0.247 4.247 11 C 0.324 3.676 12 O -0.372 6.372 13 O -0.274 6.274 14 C 0.080 3.920 15 C -0.107 4.107 16 C -0.143 4.143 17 N -0.213 5.213 18 C 0.027 3.973 19 C -0.103 4.103 20 C -0.182 4.182 21 C -0.193 4.193 22 O -0.077 6.077 23 H 0.082 0.918 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.127 0.873 28 H 0.207 0.793 29 H 0.153 0.847 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.454 -17.635 1.478 26.299 hybrid contribution -0.924 0.507 0.347 1.109 sum 18.530 -17.128 1.825 25.299 Atomic orbital electron populations 1.69930 1.05870 1.27916 1.47496 1.24701 0.94476 0.98964 0.93074 0.86743 0.81836 0.83299 0.79997 1.19100 1.19762 1.15959 1.22254 0.87600 0.97803 1.59417 0.89005 1.84800 1.10217 0.98579 1.97578 1.23035 0.89373 1.04738 1.07579 1.23332 0.92116 0.79900 0.72265 1.90683 1.58772 1.43517 1.44208 1.86594 1.23989 1.31808 1.84971 1.20952 0.79749 0.86135 1.05188 1.22810 1.08788 0.94415 0.84697 1.23195 1.02563 0.88026 1.00536 1.70432 1.19382 1.22600 1.08864 1.25155 0.98344 0.84171 0.89644 1.20116 1.04412 0.87244 0.98557 1.23123 1.00228 0.92506 1.02324 1.23155 0.90154 1.02037 1.03912 1.84368 1.66868 1.20089 1.36396 0.91775 0.86974 0.86991 0.89071 0.87268 0.79295 0.84675 0.87304 0.86993 0.87972 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.97 55.49 0.78 -25.19 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.16 27.74 -169.99 -4.72 16.44 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.52 -14.71 10.04 30.94 0.31 -14.40 16 8 H 0.09 2.70 8.03 -52.48 -0.42 2.27 16 9 S -0.14 -3.37 18.55 -107.50 -1.99 -5.36 16 10 C -0.10 -1.90 6.27 36.01 0.23 -1.67 16 11 C 0.48 8.48 7.98 36.01 0.29 8.77 16 12 O -0.49 -9.60 15.61 -18.75 -0.29 -9.90 16 13 O -0.36 -5.34 10.20 -39.25 -0.40 -5.74 16 14 C 0.15 1.86 6.01 36.01 0.22 2.07 16 15 C -0.05 -0.66 7.03 -35.69 -0.25 -0.91 16 16 C 0.00 -0.04 11.80 -17.77 -0.21 -0.25 16 17 N -0.48 -5.88 10.84 -11.10 -0.12 -6.00 16 18 C 0.23 2.63 7.89 -12.95 -0.10 2.53 16 19 C -0.08 -0.64 6.33 -91.77 -0.58 -1.22 16 20 C -0.14 -0.86 10.14 -26.69 -0.27 -1.13 16 21 C -0.15 -0.87 10.24 -26.70 -0.27 -1.14 16 22 O -0.19 -2.43 10.77 5.38 0.06 -2.37 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 25 H 0.11 2.01 8.14 -51.92 -0.42 1.59 16 26 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 27 H 0.11 1.11 8.14 -51.92 -0.42 0.69 16 28 H 0.19 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.81 7.88 -51.93 -0.41 0.40 16 32 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 315.25 15.07 4.75 4.75 Total: -1.00 -33.03 315.25 -6.47 -39.50 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.79 Total: -1.47 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.74 Total: -4.67 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.65 Total: -31.18 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.64 Total: -18.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.72 Total: 16.44 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.03 -6.47 -39.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330964140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.398 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds