Wall clock time and date at job start Tue Mar 31 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86794 * 119.99525 * 2 1 4 4 H 1.48498 * 109.47458 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.47379 * 29.99768 * 3 2 1 6 6 H 1.48504 * 109.47119 * 149.99934 * 3 2 1 7 7 C 1.38796 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99833 * 359.97438 * 7 2 1 9 9 S 1.76192 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00086 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.20823 * 119.99822 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99644 * 179.97438 * 11 10 9 14 14 C 1.45199 * 117.00038 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47576 * 180.02562 * 14 13 11 16 16 C 1.34322 * 126.44113 * 89.97185 * 15 14 13 17 17 N 1.34485 * 107.66970 * 180.02562 * 16 15 14 18 18 C 1.30258 * 108.69703 * 359.97438 * 17 16 15 19 19 C 1.50697 * 125.61890 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.49992 * 351.28003 * 19 18 17 21 21 C 1.53000 * 117.50034 * 59.93776 * 19 18 17 22 22 O 1.33969 * 108.75843 * 0.22867 * 18 17 16 23 23 H 0.96995 * 120.00505 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47177 * 60.00043 * 10 9 7 25 25 H 1.08994 * 109.47231 * 299.99669 * 10 9 7 26 26 H 1.09004 * 109.47135 * 60.00050 * 14 13 11 27 27 H 1.09008 * 109.46947 * 300.00619 * 14 13 11 28 28 H 1.08000 * 126.17279 * 0.05761 * 16 15 14 29 29 H 1.09002 * 115.54932 * 205.60840 * 19 18 17 30 30 H 1.09000 * 117.49996 * 215.00670 * 20 19 18 31 31 H 1.08999 * 117.49664 * 0.02562 * 20 19 18 32 32 H 1.09008 * 117.49673 * 359.97438 * 21 19 18 33 33 H 1.08999 * 117.49942 * 144.97208 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0014 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2323 0.0026 12 8 6.3412 -2.2995 0.0024 13 8 6.0440 -4.4893 0.0041 14 6 7.4867 -4.6530 0.0047 15 6 7.8258 -6.1213 0.0057 16 6 8.0052 -6.8995 -1.0744 17 7 8.2913 -8.1399 -0.6408 18 6 8.2913 -8.1373 0.6618 19 6 8.5658 -9.3295 1.5418 20 6 8.6691 -10.6980 0.8655 21 6 9.9279 -10.0121 1.4020 22 8 8.0015 -6.9015 1.0901 23 1 -0.4850 0.8400 -0.0004 24 1 3.6441 -3.4321 -0.8873 25 1 3.6435 -3.4309 0.8926 26 1 7.9054 -4.1824 0.8943 27 1 7.9059 -4.1841 -0.8857 28 1 7.9333 -6.5856 -2.1053 29 1 8.1214 -9.2918 2.5364 30 1 8.2926 -11.5607 1.4151 31 1 8.5389 -10.7360 -0.2160 32 1 10.6254 -9.5991 0.6731 33 1 10.3799 -10.4231 2.3046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330964140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:02 Heat of formation + Delta-G solvation = -54.846796 kcal Electronic energy + Delta-G solvation = -18434.228626 eV Core-core repulsion = 15167.551100 eV Total energy + Delta-G solvation = -3266.677525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.54262 -41.61120 -38.31384 -37.77865 -35.81851 -34.69785 -32.97143 -31.26692 -28.04031 -27.77685 -25.01221 -23.41538 -23.12127 -22.53001 -21.64669 -20.00109 -18.96758 -18.56938 -17.82234 -17.70671 -17.56835 -17.10320 -16.17914 -15.97517 -15.72895 -15.37091 -15.15151 -14.92323 -14.35263 -13.83185 -13.63696 -13.35177 -13.30088 -13.02794 -12.80865 -12.68587 -12.42785 -12.08911 -11.96253 -11.86212 -11.76926 -11.64762 -11.53875 -11.18824 -10.64831 -9.87397 -9.07522 -8.53098 -6.27080 -0.04445 0.77890 0.99303 1.21961 1.32170 1.41294 1.46146 1.53714 1.95546 2.23273 2.62874 2.76875 2.85005 2.92902 3.42926 3.68602 3.70846 3.78711 3.89907 3.98642 4.07755 4.11860 4.18631 4.38776 4.54605 4.74941 4.77473 4.90701 5.02540 5.06321 5.18529 5.23971 5.68863 6.10897 6.51209 6.52003 6.90538 8.59215 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.049328 B = 0.002662 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.491094 B =10517.598941 C =10780.834248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.233 1.233 7 C -0.533 4.533 8 H 0.064 0.936 9 S -0.156 6.156 10 C -0.092 4.092 11 C 0.497 3.503 12 O -0.509 6.509 13 O -0.353 6.353 14 C 0.154 3.846 15 C -0.075 4.075 16 C -0.001 4.001 17 N -0.506 5.506 18 C 0.233 3.767 19 C -0.107 4.107 20 C -0.138 4.138 21 C -0.141 4.141 22 O -0.207 6.207 23 H 0.278 0.722 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.213 0.787 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.231 -19.231 2.058 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.156 1.156 7 C -0.681 4.681 8 H 0.082 0.918 9 S 0.070 5.930 10 C -0.240 4.240 11 C 0.339 3.661 12 O -0.397 6.397 13 O -0.270 6.270 14 C 0.081 3.919 15 C -0.127 4.127 16 C -0.140 4.140 17 N -0.236 5.236 18 C 0.028 3.972 19 C -0.126 4.126 20 C -0.175 4.175 21 C -0.178 4.178 22 O -0.094 6.094 23 H 0.088 0.912 24 H 0.145 0.855 25 H 0.142 0.858 26 H 0.113 0.887 27 H 0.149 0.851 28 H 0.229 0.771 29 H 0.169 0.831 30 H 0.151 0.849 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 21.161 -18.515 1.740 28.171 hybrid contribution -1.387 0.527 0.260 1.506 sum 19.774 -17.989 2.001 26.807 Atomic orbital electron populations 1.70014 1.07389 1.29186 1.48656 1.25588 0.95306 1.02395 0.92731 0.85860 0.80738 0.79370 0.80366 1.18476 1.18395 1.15645 1.22415 0.89884 0.96912 1.58864 0.91751 1.84594 1.06978 1.03700 1.97694 1.22960 0.91255 1.00749 1.09031 1.22783 0.91109 0.80398 0.71788 1.90680 1.59113 1.44390 1.45514 1.86548 1.26257 1.29936 1.84301 1.21208 0.77678 0.86533 1.06522 1.22834 1.10417 0.94545 0.84890 1.23646 1.01154 0.87706 1.01504 1.70481 1.20598 1.23014 1.09465 1.26012 0.96677 0.84475 0.90048 1.20487 1.06492 0.86615 0.98987 1.23206 1.00359 0.92309 1.01658 1.23252 0.89283 1.00712 1.04596 1.84363 1.67357 1.20765 1.36946 0.91241 0.85472 0.85762 0.88656 0.85140 0.77057 0.83076 0.84853 0.88569 0.89006 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.81 13.97 21.65 0.30 -54.51 16 2 C 0.05 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.92 43.38 27.74 68.60 1.90 45.28 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.23 -10.84 6.74 99.48 0.67 -10.17 16 7 C -0.53 -30.23 10.04 67.95 0.68 -29.55 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 9 S -0.16 -7.51 18.55 -56.49 -1.05 -8.55 16 10 C -0.09 -3.40 6.27 71.24 0.45 -2.95 16 11 C 0.50 16.70 7.98 71.24 0.57 17.27 16 12 O -0.51 -19.36 15.61 21.97 0.34 -19.01 16 13 O -0.35 -10.02 10.20 -51.39 -0.52 -10.54 16 14 C 0.15 3.47 6.01 71.24 0.43 3.90 16 15 C -0.07 -1.73 7.03 24.79 0.17 -1.56 16 16 C 0.00 -0.03 11.80 83.39 0.98 0.96 16 17 N -0.51 -11.88 10.84 -303.83 -3.29 -15.17 16 18 C 0.23 5.08 7.89 88.34 0.70 5.78 16 19 C -0.11 -1.45 6.33 -11.54 -0.07 -1.52 16 20 C -0.14 -1.39 10.14 30.62 0.31 -1.08 16 21 C -0.14 -1.29 10.24 30.62 0.31 -0.97 16 22 O -0.21 -5.12 10.77 -3.67 -0.04 -5.16 16 23 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 24 H 0.13 4.35 8.14 -2.40 -0.02 4.33 16 25 H 0.12 4.32 8.14 -2.40 -0.02 4.30 16 26 H 0.10 2.09 8.13 -2.38 -0.02 2.07 16 27 H 0.13 2.38 8.14 -2.38 -0.02 2.36 16 28 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 1.30 7.88 -2.39 -0.02 1.28 16 32 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -70.68 315.25 3.73 -66.95 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.09 Total: 7.37 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 5.00 Total: -6.65 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -2.99 Total: -69.68 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.22 Total: -34.71 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.28 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.05 Total: -8.55 kcal Total: -70.68 3.73 -66.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330964140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.105 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds