Wall clock time and date at job start Tue Mar 31 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47675 * 2 1 4 4 C 1.53008 * 109.46998 * 120.00583 * 2 1 3 5 5 C 1.50698 * 109.47032 * 184.99761 * 4 2 1 6 6 O 1.20832 * 120.00438 * 0.02562 * 5 4 2 7 7 O 1.34233 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.46502 * 109.47113 * 240.00314 * 2 1 3 9 9 C 1.34777 * 120.00050 * 85.00407 * 8 2 1 10 10 O 1.21758 * 119.99992 * 359.97438 * 9 8 2 11 11 C 1.46240 * 119.99748 * 180.02562 * 9 8 2 12 12 S 1.75660 * 125.23119 * 0.02562 * 11 9 8 13 13 C 1.75477 * 92.09254 * 180.02562 * 12 11 9 14 14 C 1.32763 * 111.36199 * 359.97438 * 13 12 11 15 15 C 1.39546 * 125.22587 * 179.72179 * 11 9 8 16 16 C 1.40547 * 123.71239 * 359.97438 * 15 11 9 17 17 H 1.08000 * 119.99833 * 23.44066 * 16 15 11 18 18 C 1.40302 * 119.99667 * 203.43397 * 16 15 11 19 19 N 1.30640 * 120.00621 * 9.78959 * 18 16 15 20 20 Si 1.86801 * 119.99661 * 189.79249 * 18 16 15 21 21 H 1.48496 * 109.47294 * 60.00256 * 20 18 16 22 22 H 1.48505 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47111 * 299.99965 * 20 18 16 24 24 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47066 * 299.99504 * 1 2 3 26 26 H 1.09005 * 109.47258 * 59.99422 * 1 2 3 27 27 H 1.09000 * 109.47029 * 64.99766 * 4 2 1 28 28 H 1.08997 * 109.46906 * 304.99679 * 4 2 1 29 29 H 0.96705 * 116.99615 * 180.02562 * 7 5 4 30 30 H 0.97003 * 120.00209 * 265.00209 * 8 2 1 31 31 H 1.08000 * 124.31393 * 179.97438 * 13 12 11 32 32 H 1.07995 * 122.78348 * 180.02562 * 14 13 12 33 33 H 0.96998 * 120.00303 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5418 -0.6151 1.3127 6 8 4.1427 -0.0228 0.4478 7 8 4.2121 -1.1777 2.3306 8 7 2.0183 -0.6906 -1.1962 9 6 2.1471 -0.0181 -2.3571 10 8 1.8571 1.1632 -2.4119 11 6 2.6340 -0.7076 -3.5513 12 16 3.0883 -2.4027 -3.6283 13 6 3.5002 -2.2815 -5.3297 14 6 3.3038 -1.0512 -5.7884 15 6 2.8035 -0.1215 -4.8063 16 6 2.5215 1.2275 -5.0817 17 1 2.5222 1.9535 -4.2821 18 6 2.2391 1.6311 -6.3955 19 7 2.0493 0.7355 -7.3275 20 14 2.1346 3.4491 -6.8120 21 1 3.4330 4.1021 -6.5074 22 1 1.8261 3.6092 -8.2558 23 1 1.0609 4.0811 -6.0039 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.7515 -1.7717 1.2055 28 1 1.6053 -0.2619 2.1370 29 1 5.1744 -1.0827 2.3284 30 1 2.2490 -1.6317 -1.1528 31 1 3.8666 -3.1030 -5.9274 32 1 3.4982 -0.7711 -6.8131 33 1 1.8537 1.0146 -8.2356 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332131683.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:22 Heat of formation + Delta-G solvation = -116.978191 kcal Electronic energy + Delta-G solvation = -19901.993885 eV Core-core repulsion = 16632.622140 eV Total energy + Delta-G solvation = -3269.371745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23218 -38.35796 -36.36055 -35.88447 -34.77606 -33.00123 -31.05592 -28.88172 -28.23936 -26.04994 -22.95223 -22.00693 -20.60396 -19.76672 -18.70229 -17.93472 -17.52967 -16.43786 -16.22673 -15.60075 -15.37984 -14.83892 -14.25087 -13.74183 -13.60080 -13.32474 -12.65396 -12.45589 -12.40578 -12.26223 -11.85745 -11.82744 -11.60156 -11.39496 -11.37373 -11.05359 -10.95520 -10.72749 -10.41738 -10.39344 -10.08426 -9.58283 -9.20541 -8.35531 -8.18137 -7.42947 -7.08892 -6.98835 -4.46560 2.22392 2.33806 3.01691 3.03922 3.06591 3.07863 3.17617 3.69033 3.85897 3.90437 4.11572 4.51673 4.71860 5.11442 5.23162 5.34461 5.47663 5.64289 5.72881 5.90641 6.08004 6.24414 6.50641 6.56958 6.74964 6.89969 7.21907 7.25669 7.38782 7.53597 7.76439 7.99105 8.42250 8.51800 8.66646 8.85505 9.69531 9.92505 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.005540 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.891287 B = 5052.725805 C = 5809.324560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.092 0.908 4 C -0.120 4.120 5 C 0.466 3.534 6 O -0.486 6.486 7 O -0.526 6.526 8 N -0.740 5.740 9 C 0.609 3.391 10 O -0.563 6.563 11 C -0.426 4.426 12 S -0.054 6.054 13 C -0.207 4.207 14 C -0.098 4.098 15 C 0.140 3.860 16 C -0.379 4.379 17 H 0.111 0.889 18 C 0.068 3.932 19 N -0.781 5.781 20 Si 0.925 3.075 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.259 1.259 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.407 0.593 30 H 0.386 0.614 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.011 -3.943 10.864 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.110 0.890 4 C -0.158 4.158 5 C 0.307 3.693 6 O -0.371 6.371 7 O -0.339 6.339 8 N -0.393 5.393 9 C 0.406 3.594 10 O -0.446 6.446 11 C -0.544 4.544 12 S 0.200 5.800 13 C -0.341 4.341 14 C -0.130 4.130 15 C 0.129 3.871 16 C -0.410 4.410 17 H 0.129 0.871 18 C -0.153 4.153 19 N -0.406 5.406 20 Si 0.749 3.251 21 H -0.184 1.184 22 H -0.202 1.202 23 H -0.183 1.183 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.266 0.734 30 H 0.219 0.781 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.508 -4.152 11.346 12.093 hybrid contribution 0.697 1.140 -1.319 1.877 sum 0.188 -3.011 10.028 10.472 Atomic orbital electron populations 1.22184 0.95055 1.02000 1.02677 1.20508 0.93523 0.97925 0.82808 0.88978 1.21769 0.87746 1.04787 1.01532 1.23513 0.91796 0.75571 0.78462 1.90863 1.70033 1.38491 1.37735 1.84518 1.26942 1.73358 1.49070 1.45761 1.71315 1.12854 1.09330 1.16719 0.76154 0.85507 0.81019 1.90635 1.53626 1.15790 1.84563 1.22609 1.38200 0.94392 0.99247 1.82648 1.75410 1.13071 1.08834 1.24922 1.10705 1.00867 0.97608 1.21727 0.98412 0.92091 1.00817 1.17926 0.87902 0.92984 0.88281 1.19995 1.33286 0.94088 0.93596 0.87111 1.26361 0.92007 1.01202 0.95778 1.69666 1.31028 1.36519 1.03356 0.86060 0.80563 0.80893 0.77620 1.18403 1.20180 1.18282 0.92615 0.92246 0.91056 0.87512 0.86759 0.73447 0.78136 0.84564 0.83758 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 37.15 0.35 -1.86 16 2 C 0.16 2.51 2.14 -67.93 -0.15 2.36 16 3 H 0.09 1.72 7.39 -51.93 -0.38 1.33 16 4 C -0.12 -1.36 5.35 -27.88 -0.15 -1.51 16 5 C 0.47 6.34 8.19 36.00 0.29 6.63 16 6 O -0.49 -9.06 16.11 -18.75 -0.30 -9.36 16 7 O -0.53 -5.43 13.42 -39.26 -0.53 -5.96 16 8 N -0.74 -14.58 4.22 -55.24 -0.23 -14.82 16 9 C 0.61 15.35 7.73 -13.05 -0.10 15.25 16 10 O -0.56 -15.74 14.11 5.14 0.07 -15.67 16 11 C -0.43 -11.14 6.51 -35.88 -0.23 -11.38 16 12 S -0.05 -1.21 22.25 -107.50 -2.39 -3.60 16 13 C -0.21 -4.64 11.07 28.86 0.32 -4.32 16 14 C -0.10 -2.45 9.04 -39.12 -0.35 -2.81 16 15 C 0.14 3.86 5.67 -106.21 -0.60 3.25 16 16 C -0.38 -10.50 8.52 -37.94 -0.32 -10.83 16 17 H 0.11 3.23 6.03 -52.49 -0.32 2.92 16 18 C 0.07 1.69 5.39 -17.28 -0.09 1.60 16 19 N -0.78 -19.27 10.82 55.57 0.60 -18.67 16 20 Si 0.93 19.03 29.57 -169.99 -5.03 14.00 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.41 2.74 9.10 45.56 0.41 3.16 16 30 H 0.39 7.06 7.68 -40.82 -0.31 6.74 16 31 H 0.14 2.58 8.06 -52.49 -0.42 2.16 16 32 H 0.15 3.57 6.41 -52.49 -0.34 3.24 16 33 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -33.17 304.59 -6.86 -40.03 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -2.61 Total: 13.05 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.03 Total: -3.60 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.37 Total: -33.48 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.76 Total: -30.99 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.39 Total: -3.60 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.17 -6.86 -40.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332131683.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.952 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds