Wall clock time and date at job start Tue Mar 31 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47675 * 2 1 4 4 C 1.53008 * 109.46998 * 120.00583 * 2 1 3 5 5 C 1.50698 * 109.47032 * 184.99761 * 4 2 1 6 6 O 1.20832 * 120.00438 * 0.02562 * 5 4 2 7 7 O 1.34233 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.46502 * 109.47113 * 240.00314 * 2 1 3 9 9 C 1.34777 * 120.00050 * 85.00407 * 8 2 1 10 10 O 1.21758 * 119.99992 * 359.97438 * 9 8 2 11 11 C 1.46240 * 119.99748 * 180.02562 * 9 8 2 12 12 S 1.75660 * 125.23119 * 0.02562 * 11 9 8 13 13 C 1.75477 * 92.09254 * 180.02562 * 12 11 9 14 14 C 1.32763 * 111.36199 * 359.97438 * 13 12 11 15 15 C 1.39546 * 125.22587 * 179.72179 * 11 9 8 16 16 C 1.40547 * 123.71239 * 359.97438 * 15 11 9 17 17 H 1.08000 * 119.99833 * 23.44066 * 16 15 11 18 18 C 1.40302 * 119.99667 * 203.43397 * 16 15 11 19 19 N 1.30640 * 120.00621 * 9.78959 * 18 16 15 20 20 Si 1.86801 * 119.99661 * 189.79249 * 18 16 15 21 21 H 1.48496 * 109.47294 * 60.00256 * 20 18 16 22 22 H 1.48505 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47111 * 299.99965 * 20 18 16 24 24 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47066 * 299.99504 * 1 2 3 26 26 H 1.09005 * 109.47258 * 59.99422 * 1 2 3 27 27 H 1.09000 * 109.47029 * 64.99766 * 4 2 1 28 28 H 1.08997 * 109.46906 * 304.99679 * 4 2 1 29 29 H 0.96705 * 116.99615 * 180.02562 * 7 5 4 30 30 H 0.97003 * 120.00209 * 265.00209 * 8 2 1 31 31 H 1.08000 * 124.31393 * 179.97438 * 13 12 11 32 32 H 1.07995 * 122.78348 * 180.02562 * 14 13 12 33 33 H 0.96998 * 120.00303 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5418 -0.6151 1.3127 6 8 4.1427 -0.0228 0.4478 7 8 4.2121 -1.1777 2.3306 8 7 2.0183 -0.6906 -1.1962 9 6 2.1471 -0.0181 -2.3571 10 8 1.8571 1.1632 -2.4119 11 6 2.6340 -0.7076 -3.5513 12 16 3.0883 -2.4027 -3.6283 13 6 3.5002 -2.2815 -5.3297 14 6 3.3038 -1.0512 -5.7884 15 6 2.8035 -0.1215 -4.8063 16 6 2.5215 1.2275 -5.0817 17 1 2.5222 1.9535 -4.2821 18 6 2.2391 1.6311 -6.3955 19 7 2.0493 0.7355 -7.3275 20 14 2.1346 3.4491 -6.8120 21 1 3.4330 4.1021 -6.5074 22 1 1.8261 3.6092 -8.2558 23 1 1.0609 4.0811 -6.0039 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.7515 -1.7717 1.2055 28 1 1.6053 -0.2619 2.1370 29 1 5.1744 -1.0827 2.3284 30 1 2.2490 -1.6317 -1.1528 31 1 3.8666 -3.1030 -5.9274 32 1 3.4982 -0.7711 -6.8131 33 1 1.8537 1.0146 -8.2356 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332131683.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:22 Heat of formation + Delta-G solvation = -141.330266 kcal Electronic energy + Delta-G solvation = -19903.049870 eV Core-core repulsion = 16632.622140 eV Total energy + Delta-G solvation = -3270.427730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36704 -40.07482 -38.02108 -37.14800 -36.31404 -34.90414 -32.61867 -30.72233 -29.36162 -27.93437 -24.49938 -23.48587 -22.06644 -21.33040 -20.60093 -19.30006 -18.94451 -17.81734 -17.53494 -17.25555 -16.96717 -16.29551 -15.97186 -15.46551 -15.27843 -14.61416 -14.21517 -14.05133 -13.86860 -13.62280 -13.41952 -13.24302 -13.10863 -12.98482 -12.75923 -12.69833 -12.46953 -12.06989 -12.05489 -11.97053 -11.55456 -11.42947 -11.07276 -10.31743 -9.87951 -9.33584 -8.94058 -8.84988 -6.44436 0.32268 1.29404 1.32068 1.35241 1.36387 1.44174 1.78035 1.98941 2.15624 2.16928 2.58304 2.63667 3.33263 3.59942 4.12810 4.26157 4.35266 4.51433 4.61241 4.66656 4.79617 4.86702 5.00386 5.15637 5.28389 5.35485 5.39534 5.57782 5.68770 5.82383 5.87683 6.40612 6.58640 6.73800 7.00805 7.05699 7.82018 8.08663 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.005540 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.891287 B = 5052.725805 C = 5809.324560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 H 0.055 0.945 4 C -0.110 4.110 5 C 0.471 3.529 6 O -0.549 6.549 7 O -0.511 6.511 8 N -0.725 5.725 9 C 0.598 3.402 10 O -0.605 6.605 11 C -0.467 4.467 12 S 0.007 5.993 13 C -0.193 4.193 14 C -0.128 4.128 15 C 0.110 3.890 16 C -0.421 4.421 17 H 0.081 0.919 18 C 0.036 3.964 19 N -0.795 5.795 20 Si 0.989 3.011 21 H -0.259 1.259 22 H -0.248 1.248 23 H -0.270 1.270 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.028 0.972 27 H 0.139 0.861 28 H 0.158 0.842 29 H 0.424 0.576 30 H 0.394 0.606 31 H 0.177 0.823 32 H 0.141 0.859 33 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.373 -5.702 12.068 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.073 0.927 4 C -0.147 4.147 5 C 0.315 3.685 6 O -0.439 6.439 7 O -0.325 6.325 8 N -0.377 5.377 9 C 0.394 3.606 10 O -0.491 6.491 11 C -0.586 4.586 12 S 0.263 5.737 13 C -0.327 4.327 14 C -0.161 4.161 15 C 0.098 3.902 16 C -0.452 4.452 17 H 0.099 0.901 18 C -0.183 4.183 19 N -0.419 5.419 20 Si 0.808 3.192 21 H -0.184 1.184 22 H -0.171 1.171 23 H -0.195 1.195 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.047 0.953 27 H 0.157 0.843 28 H 0.176 0.824 29 H 0.285 0.715 30 H 0.228 0.772 31 H 0.195 0.805 32 H 0.159 0.841 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.864 -5.989 12.614 13.990 hybrid contribution 0.840 1.548 -1.533 2.335 sum -0.025 -4.441 11.081 11.938 Atomic orbital electron populations 1.22102 0.93126 1.03324 1.02469 1.20748 0.95016 0.96476 0.83274 0.92676 1.21792 0.86221 1.06375 1.00320 1.23945 0.92736 0.74074 0.77765 1.90867 1.71384 1.41419 1.40224 1.84476 1.28461 1.72152 1.47362 1.45591 1.69982 1.13024 1.09074 1.16915 0.76006 0.85218 0.82457 1.90594 1.55369 1.17595 1.85545 1.23167 1.38430 0.97356 0.99605 1.82195 1.74142 1.09234 1.08122 1.25440 1.08109 1.00952 0.98223 1.21616 1.00960 0.92912 1.00601 1.18401 0.88263 0.93744 0.89747 1.19957 1.36479 0.94283 0.94461 0.90126 1.27022 0.91157 1.05387 0.94762 1.69641 1.30251 1.38092 1.03953 0.85155 0.79988 0.75421 0.78590 1.18365 1.17082 1.19451 0.90420 0.88439 0.95293 0.84286 0.82408 0.71528 0.77186 0.80528 0.84122 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.48 71.98 0.68 -3.30 16 2 C 0.15 4.66 2.14 44.99 0.10 4.76 16 3 H 0.05 2.14 7.39 -2.39 -0.02 2.13 16 4 C -0.11 -2.13 5.35 29.85 0.16 -1.97 16 5 C 0.47 11.98 8.19 71.24 0.58 12.56 16 6 O -0.55 -20.71 16.11 21.95 0.35 -20.36 16 7 O -0.51 -9.07 13.42 -51.44 -0.69 -9.76 16 8 N -0.73 -28.84 4.22 -446.89 -1.88 -30.72 16 9 C 0.60 31.52 7.73 86.32 0.67 32.19 16 10 O -0.60 -36.24 14.11 -4.53 -0.06 -36.31 16 11 C -0.47 -25.20 6.51 24.67 0.16 -25.04 16 12 S 0.01 0.32 22.25 -56.49 -1.26 -0.94 16 13 C -0.19 -8.38 11.07 66.64 0.74 -7.64 16 14 C -0.13 -6.52 9.04 22.60 0.20 -6.31 16 15 C 0.11 6.29 5.67 -20.89 -0.12 6.17 16 16 C -0.42 -24.75 8.52 23.34 0.20 -24.56 16 17 H 0.08 5.11 6.03 -2.91 -0.02 5.09 16 18 C 0.04 1.87 5.39 85.37 0.46 2.33 16 19 N -0.79 -39.80 10.82 21.89 0.24 -39.56 16 20 Si 0.99 40.01 29.57 68.60 2.03 42.04 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.42 4.73 9.10 -74.05 -0.67 4.06 16 30 H 0.39 14.04 7.68 -92.71 -0.71 13.33 16 31 H 0.18 6.10 8.06 -2.91 -0.02 6.08 16 32 H 0.14 7.10 6.41 -2.91 -0.02 7.08 16 33 H 0.30 13.24 8.29 -92.71 -0.77 12.47 16 Total: -1.00 -78.75 304.59 2.35 -76.40 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.21 Total: 30.00 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.83 Total: -10.79 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.65 Total: -70.28 kcal Atomic # 8 Polarization: -66.02 SS G_CDS: -0.40 Total: -66.42 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.26 Total: -0.94 kcal Total: -78.75 2.35 -76.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332131683.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.929 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds