Wall clock time and date at job start Tue Mar 31 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47026 * 336.31522 * 3 2 1 5 5 C 1.36935 * 119.99894 * 95.96131 * 4 3 2 6 6 H 1.07996 * 120.00094 * 162.42707 * 5 4 3 7 7 C 1.38812 * 120.00009 * 342.15590 * 5 4 3 8 8 N 1.31623 * 119.99974 * 337.05926 * 7 5 4 9 9 Si 1.86800 * 120.00252 * 157.05710 * 7 5 4 10 10 H 1.48502 * 109.46807 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47397 * 119.99747 * 9 7 5 12 12 H 1.48508 * 109.47195 * 240.00172 * 9 7 5 13 13 C 1.46499 * 120.00274 * 275.96084 * 4 3 2 14 14 C 1.50706 * 109.47006 * 270.00147 * 13 4 3 15 15 C 1.38712 * 120.03052 * 90.00071 * 14 13 4 16 16 O 1.35921 * 120.03459 * 359.95200 * 15 14 13 17 17 C 1.38713 * 119.93826 * 179.97438 * 15 14 13 18 18 C 1.38193 * 120.00185 * 359.97438 * 17 15 14 19 19 C 1.38295 * 120.06357 * 359.97438 * 18 17 15 20 20 Cl 1.73602 * 119.96245 * 180.02562 * 19 18 17 21 21 C 1.38318 * 120.03462 * 269.72129 * 14 13 4 22 22 F 1.35102 * 120.00193 * 0.02562 * 21 14 13 23 23 H 4.40639 * 5.51460 * 179.97438 * 4 1 2 24 24 H 1.08998 * 109.46593 * 216.31812 * 3 2 1 25 25 H 1.08997 * 109.46805 * 96.31867 * 3 2 1 26 26 H 0.96995 * 119.99705 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.47106 * 30.00277 * 13 4 3 28 28 H 1.08997 * 109.47412 * 150.00148 * 13 4 3 29 29 H 0.96699 * 113.99870 * 89.99907 * 16 15 14 30 30 H 1.07998 * 119.99611 * 179.97438 * 17 15 14 31 31 H 1.07993 * 119.96402 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.2640 0.5548 5 6 3.4797 -2.2912 -0.2825 6 1 4.0944 -3.1013 0.0812 7 6 3.0345 -2.2941 -1.5973 8 7 1.9600 -1.6105 -1.9298 9 14 3.9603 -3.2682 -2.8948 10 1 5.1252 -3.9439 -2.2689 11 1 3.0567 -4.2864 -3.4879 12 1 4.4356 -2.3480 -3.9591 13 6 3.2550 -1.4298 2.0055 14 6 4.6283 -0.9953 2.4488 15 6 4.8549 0.3234 2.8144 16 8 3.8389 1.2253 2.7723 17 6 6.1195 0.7210 3.2227 18 6 7.1521 -0.1963 3.2653 19 6 6.9260 -1.5114 2.9018 20 17 8.2250 -2.6618 2.9571 21 6 5.6626 -1.9125 2.4970 22 9 5.4421 -3.1983 2.1461 23 1 -1.0498 -0.0003 0.0003 24 1 3.0089 0.8289 0.6087 25 1 3.0093 0.1139 -1.0214 26 1 1.6487 -1.6129 -2.8484 27 1 2.5021 -0.8196 2.5044 28 1 3.1039 -2.4775 2.2652 29 1 3.3363 1.2903 3.5959 30 1 6.2971 1.7476 3.5071 31 1 8.1364 0.1138 3.5837 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333873810.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:19 Heat of formation + Delta-G solvation = 17.428509 kcal Electronic energy + Delta-G solvation = -20010.219023 eV Core-core repulsion = 16621.171579 eV Total energy + Delta-G solvation = -3389.047444 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.52517 -39.66438 -36.98382 -36.07201 -35.77083 -32.24365 -31.52422 -30.01422 -29.31176 -26.36084 -25.69398 -22.59550 -22.50202 -20.72938 -18.50693 -17.54424 -16.71209 -16.63594 -16.26791 -15.79844 -15.51421 -14.79520 -14.53388 -13.73985 -13.65243 -13.53057 -13.36443 -12.74762 -12.68740 -12.52849 -11.78875 -11.45753 -11.30631 -11.01974 -10.94043 -10.83676 -10.68136 -10.51597 -10.19678 -9.97708 -8.97678 -8.80696 -8.49025 -8.40180 -8.36102 -7.03097 -5.78567 -3.19748 1.05257 1.25487 2.14087 3.38344 3.44900 3.48008 3.52440 4.08523 4.22399 4.42498 4.49873 4.56763 4.85365 5.05205 5.26408 5.39243 5.66242 5.71501 5.76107 5.88929 6.05881 6.08229 6.25011 6.46843 6.58072 6.77414 6.86899 7.26548 7.45231 7.73304 7.82119 8.27129 9.11157 9.22173 9.76216 10.21494 11.24880 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.007390 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.640854 B = 3787.931085 C = 5127.143168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.091 4.091 3 C 0.264 3.736 4 N -0.571 5.571 5 C -0.269 4.269 6 H 0.079 0.921 7 C 0.007 3.993 8 N -0.884 5.884 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.288 1.288 13 C 0.187 3.813 14 C -0.133 4.133 15 C 0.144 3.856 16 O -0.482 6.482 17 C -0.150 4.150 18 C -0.083 4.083 19 C -0.087 4.087 20 Cl -0.063 7.063 21 C 0.143 3.857 22 F -0.117 7.117 23 H 0.190 0.810 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.254 0.746 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.388 0.612 30 H 0.138 0.862 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.626 4.899 12.597 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.094 4.094 3 C 0.139 3.861 4 N -0.289 5.289 5 C -0.398 4.398 6 H 0.097 0.903 7 C -0.192 4.192 8 N -0.527 5.527 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.215 1.215 13 C 0.059 3.941 14 C -0.138 4.138 15 C 0.098 3.902 16 O -0.292 6.292 17 C -0.169 4.169 18 C -0.102 4.102 19 C -0.115 4.115 20 Cl -0.034 7.034 21 C 0.122 3.878 22 F -0.095 7.095 23 H 0.207 0.793 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.245 0.755 30 H 0.155 0.845 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.839 4.816 11.804 14.966 hybrid contribution 0.083 -0.999 -0.575 1.155 sum 7.922 3.817 11.229 14.262 Atomic orbital electron populations 1.24160 0.95312 1.05736 1.07145 1.24271 0.95248 0.95275 0.94610 1.17855 0.82747 0.86305 0.99183 1.43989 1.73909 1.12180 0.98830 1.19327 1.26204 1.02585 0.91656 0.90314 1.24883 0.96214 0.99533 0.98609 1.70173 1.20051 1.44790 1.17690 0.86342 0.79867 0.79312 0.82072 1.20092 1.21820 1.21490 1.19562 0.88283 0.99691 0.86549 1.21585 1.00379 0.92433 0.99404 1.18037 0.87954 0.87105 0.97093 1.84907 1.45282 1.58883 1.40167 1.21318 0.92433 1.00228 1.02930 1.20618 0.99879 0.90004 0.99697 1.20992 0.88643 0.92427 1.09420 1.98358 1.48086 1.59731 1.97207 1.17032 0.91618 0.80115 0.99073 1.91553 1.95028 1.33934 1.88965 0.79322 0.92960 0.89195 0.93596 0.92411 0.91873 0.75517 0.84454 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.97 19.25 29.55 0.57 -6.40 16 2 C -0.09 -2.23 11.56 -37.12 -0.43 -2.66 16 3 C 0.26 6.34 5.41 -6.83 -0.04 6.30 16 4 N -0.57 -13.90 2.47 -177.95 -0.44 -14.34 16 5 C -0.27 -7.30 9.64 -15.06 -0.15 -7.45 16 6 H 0.08 2.16 7.08 -52.49 -0.37 1.78 16 7 C 0.01 0.19 4.82 -17.43 -0.08 0.11 16 8 N -0.88 -25.40 9.59 55.49 0.53 -24.87 16 9 Si 0.89 22.06 29.61 -169.99 -5.03 17.03 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C 0.19 3.75 5.40 -5.19 -0.03 3.72 16 14 C -0.13 -2.32 5.48 -104.41 -0.57 -2.89 16 15 C 0.14 2.10 6.68 -39.23 -0.26 1.83 16 16 O -0.48 -6.40 11.03 -19.49 -0.21 -6.61 16 17 C -0.15 -1.83 9.98 -39.42 -0.39 -2.22 16 18 C -0.08 -1.02 9.82 -39.58 -0.39 -1.41 16 19 C -0.09 -1.31 6.33 -39.42 -0.25 -1.56 16 20 Cl -0.06 -0.88 28.61 -51.86 -1.48 -2.37 16 21 C 0.14 2.52 7.21 -39.42 -0.28 2.24 16 22 F -0.12 -2.30 15.21 2.25 0.03 -2.26 16 23 H 0.19 3.62 7.80 -54.10 -0.42 3.20 16 24 H 0.05 1.13 6.54 -51.93 -0.34 0.80 16 25 H 0.09 2.40 6.50 -51.93 -0.34 2.06 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.06 7.46 -51.93 -0.39 0.67 16 28 H 0.06 1.31 7.53 -51.93 -0.39 0.92 16 29 H 0.39 3.15 9.06 45.56 0.41 3.56 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -31.45 295.83 -6.27 -37.72 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -1.82 Total: 1.65 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.30 Total: -10.40 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.09 Total: -39.21 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.21 Total: -6.61 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.03 Total: -2.26 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.48 Total: -2.37 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.45 -6.27 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333873810.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.149 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds