Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42891 * 112.94378 * 50.33064 * 9 7 2 11 11 C 1.53937 * 113.73251 * 278.76176 * 9 7 2 12 12 N 1.48184 * 86.10300 * 221.96355 * 11 9 7 13 13 C 1.46900 * 111.07654 * 137.52119 * 12 11 9 14 14 C 1.50703 * 109.47301 * 90.55959 * 13 12 11 15 15 C 1.33864 * 124.51247 * 90.00087 * 14 13 12 16 16 C 1.37420 * 115.10780 * 179.97438 * 15 14 13 17 17 C 1.36747 * 113.28649 * 0.02562 * 16 15 14 18 18 C 1.46395 * 125.46547 * 180.02562 * 17 16 15 19 19 O 1.21639 * 119.99491 * 359.97438 * 18 17 16 20 20 O 1.34891 * 120.00487 * 179.97438 * 18 17 16 21 21 S 1.70615 * 124.52270 * 269.70651 * 14 13 12 22 22 C 1.47960 * 90.80064 * 24.59714 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00462 * 309.66689 * 10 9 7 25 25 H 1.09004 * 113.75714 * 336.24047 * 11 9 7 26 26 H 1.08998 * 113.75976 * 107.60271 * 11 9 7 27 27 H 1.08995 * 109.47316 * 210.56763 * 13 12 11 28 28 H 1.09002 * 109.46915 * 330.56697 * 13 12 11 29 29 H 1.07997 * 122.44653 * 359.97438 * 15 14 13 30 30 H 1.07996 * 123.35487 * 180.02562 * 16 15 14 31 31 H 0.96706 * 117.00001 * 179.97438 * 20 18 17 32 32 H 1.08999 * 113.76188 * 221.08263 * 22 12 11 33 33 H 1.09005 * 113.85619 * 89.73473 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0681 -0.3547 1.0137 11 6 4.1316 -0.9785 -1.3923 12 7 5.0973 -2.0371 -1.0148 13 6 5.3282 -2.9639 -2.1310 14 6 6.4872 -2.4733 -2.9599 15 6 7.7659 -2.8089 -2.7495 16 6 8.6669 -2.2493 -3.6233 17 6 8.0823 -1.4414 -4.5590 18 6 8.7896 -0.7146 -5.6148 19 8 9.9990 -0.8040 -5.7093 20 8 8.1002 0.0542 -6.4827 21 16 6.3438 -1.4218 -4.2959 22 6 4.1311 -2.6025 -0.0473 23 1 -0.4850 0.8401 0.0004 24 1 3.7022 0.5402 1.0281 25 1 3.4728 -1.2580 -2.2145 26 1 4.5845 0.0042 -1.5240 27 1 5.5556 -3.9552 -1.7390 28 1 4.4336 -3.0151 -2.7517 29 1 8.0674 -3.4710 -1.9514 30 1 9.7306 -2.4297 -3.5758 31 1 8.6109 0.5151 -7.1624 32 1 4.5837 -2.9151 0.8937 33 1 3.4714 -3.3583 -0.4736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334041600.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = -53.524892 kcal Electronic energy + Delta-G solvation = -19544.968010 eV Core-core repulsion = 16278.347807 eV Total energy + Delta-G solvation = -3266.620203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23071 -39.55038 -37.83536 -36.18293 -34.99193 -32.49662 -31.62815 -28.50963 -26.55331 -25.53898 -24.43435 -22.65903 -21.85661 -19.26539 -19.10925 -18.70341 -17.51159 -17.16715 -16.24749 -15.98230 -15.84136 -15.45831 -14.97392 -14.46902 -13.80189 -13.52516 -13.39225 -13.08105 -12.77025 -12.65685 -12.42342 -12.18034 -11.85980 -11.77486 -11.31035 -11.14789 -10.92778 -10.79476 -10.59587 -10.51804 -10.03024 -9.46714 -9.02828 -8.83451 -8.63899 -8.59787 -8.16974 -6.38666 -4.43882 0.29106 1.38397 1.87847 2.13949 2.82218 2.85894 3.03422 3.10687 3.18566 4.08476 4.42478 4.65944 4.84908 5.05098 5.12553 5.23869 5.35181 5.38914 5.58807 5.68658 5.81317 5.94079 6.06212 6.08813 6.22261 6.27563 6.34725 6.51536 6.78049 6.78409 7.26624 7.55071 7.65505 8.08870 8.62252 8.63345 9.20477 10.73711 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025006 B = 0.004503 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.448680 B = 6216.044892 C = 6768.760451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.080 3.920 3 Si 0.856 3.144 4 H -0.268 1.268 5 H -0.252 1.252 6 H -0.285 1.285 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.203 3.797 10 O -0.551 6.551 11 C -0.034 4.034 12 N -0.472 5.472 13 C 0.077 3.923 14 C -0.156 4.156 15 C -0.156 4.156 16 C -0.031 4.031 17 C -0.289 4.289 18 C 0.563 3.437 19 O -0.515 6.515 20 O -0.513 6.513 21 S 0.255 5.745 22 C 0.026 3.974 23 H 0.269 0.731 24 H 0.349 0.651 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.416 0.584 32 H 0.084 0.916 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.691 -3.012 -10.049 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.125 4.125 3 Si 0.684 3.316 4 H -0.194 1.194 5 H -0.176 1.176 6 H -0.211 1.211 7 C -0.577 4.577 8 H 0.104 0.896 9 C 0.162 3.838 10 O -0.361 6.361 11 C -0.163 4.163 12 N -0.195 5.195 13 C -0.053 4.053 14 C -0.277 4.277 15 C -0.186 4.186 16 C -0.066 4.066 17 C -0.408 4.408 18 C 0.407 3.593 19 O -0.406 6.406 20 O -0.325 6.325 21 S 0.524 5.476 22 C -0.103 4.103 23 H 0.080 0.920 24 H 0.201 0.799 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.274 0.726 32 H 0.103 0.897 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.356 -2.786 -10.174 16.246 hybrid contribution 0.836 0.731 -0.188 1.127 sum 13.192 -2.054 -10.362 16.901 Atomic orbital electron populations 1.69871 1.06145 1.27537 1.48140 1.24998 0.94863 0.99089 0.93557 0.87359 0.80805 0.84194 0.79201 1.19399 1.17641 1.21132 1.21379 0.88395 0.95392 1.52553 0.89602 1.20408 0.92091 0.87772 0.83504 1.86454 1.67470 1.25385 1.56827 1.25250 0.93229 0.96083 1.01749 1.68649 1.34734 1.07632 1.08493 1.21294 0.93182 0.97662 0.93146 1.24479 0.99951 1.02169 1.01085 1.19893 0.91124 1.05230 1.02326 1.20726 1.01379 0.92933 0.91587 1.23373 0.99001 1.12910 1.05477 1.19346 0.84686 0.75878 0.79381 1.90928 1.14782 1.62570 1.72306 1.84619 1.45213 1.59321 1.43334 1.83355 1.00859 1.41137 1.22220 1.24017 0.92504 0.97386 0.96357 0.92034 0.79932 0.90718 0.90540 0.89030 0.92314 0.83456 0.83029 0.72564 0.89738 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.13 13.96 55.43 0.77 -24.35 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 19.48 24.30 -169.99 -4.13 15.34 16 4 H -0.27 -5.93 7.05 56.52 0.40 -5.53 16 5 H -0.25 -5.44 5.15 56.52 0.29 -5.15 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.20 9.19 -34.44 -0.32 -14.52 16 8 H 0.09 2.42 8.06 -52.49 -0.42 1.99 16 9 C 0.20 4.66 1.05 -90.84 -0.10 4.56 16 10 O -0.55 -13.23 13.35 -35.23 -0.47 -13.70 16 11 C -0.03 -0.69 6.44 -2.63 -0.02 -0.71 16 12 N -0.47 -8.61 6.14 -239.48 -1.47 -10.08 16 13 C 0.08 1.12 5.23 -4.97 -0.03 1.09 16 14 C -0.16 -2.14 5.84 -35.84 -0.21 -2.34 16 15 C -0.16 -1.94 9.99 -41.42 -0.41 -2.35 16 16 C -0.03 -0.39 10.01 -40.42 -0.40 -0.79 16 17 C -0.29 -3.79 6.45 -36.84 -0.24 -4.02 16 18 C 0.56 7.16 8.30 34.01 0.28 7.45 16 19 O -0.52 -7.63 17.63 -19.37 -0.34 -7.97 16 20 O -0.51 -5.02 13.29 -41.02 -0.54 -5.56 16 21 S 0.25 3.33 22.87 -107.50 -2.46 0.87 16 22 C 0.03 0.49 7.34 -2.76 -0.02 0.47 16 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.35 8.08 3.57 45.56 0.16 8.24 16 25 H 0.07 1.48 7.44 -51.93 -0.39 1.09 16 26 H 0.08 1.59 6.82 -51.93 -0.35 1.24 16 27 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 28 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 29 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.42 1.96 9.11 45.56 0.42 2.38 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.08 1.37 7.88 -51.93 -0.41 0.96 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -31.32 297.08 -8.04 -39.36 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -2.31 Total: 10.73 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.56 Total: -9.12 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: -0.70 Total: -34.43 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -1.36 Total: -27.23 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.13 Total: 15.34 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.46 Total: 0.87 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.32 -8.04 -39.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334041600.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.164 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds