Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42891 * 112.94378 * 50.33064 * 9 7 2 11 11 C 1.53937 * 113.73251 * 278.76176 * 9 7 2 12 12 N 1.48184 * 86.10300 * 221.96355 * 11 9 7 13 13 C 1.46900 * 111.07654 * 137.52119 * 12 11 9 14 14 C 1.50703 * 109.47301 * 90.55959 * 13 12 11 15 15 C 1.33864 * 124.51247 * 90.00087 * 14 13 12 16 16 C 1.37420 * 115.10780 * 179.97438 * 15 14 13 17 17 C 1.36747 * 113.28649 * 0.02562 * 16 15 14 18 18 C 1.46395 * 125.46547 * 180.02562 * 17 16 15 19 19 O 1.21639 * 119.99491 * 359.97438 * 18 17 16 20 20 O 1.34891 * 120.00487 * 179.97438 * 18 17 16 21 21 S 1.70615 * 124.52270 * 269.70651 * 14 13 12 22 22 C 1.47960 * 90.80064 * 24.59714 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00462 * 309.66689 * 10 9 7 25 25 H 1.09004 * 113.75714 * 336.24047 * 11 9 7 26 26 H 1.08998 * 113.75976 * 107.60271 * 11 9 7 27 27 H 1.08995 * 109.47316 * 210.56763 * 13 12 11 28 28 H 1.09002 * 109.46915 * 330.56697 * 13 12 11 29 29 H 1.07997 * 122.44653 * 359.97438 * 15 14 13 30 30 H 1.07996 * 123.35487 * 180.02562 * 16 15 14 31 31 H 0.96706 * 117.00001 * 179.97438 * 20 18 17 32 32 H 1.08999 * 113.76188 * 221.08263 * 22 12 11 33 33 H 1.09005 * 113.85619 * 89.73473 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0681 -0.3547 1.0137 11 6 4.1316 -0.9785 -1.3923 12 7 5.0973 -2.0371 -1.0148 13 6 5.3282 -2.9639 -2.1310 14 6 6.4872 -2.4733 -2.9599 15 6 7.7659 -2.8089 -2.7495 16 6 8.6669 -2.2493 -3.6233 17 6 8.0823 -1.4414 -4.5590 18 6 8.7896 -0.7146 -5.6148 19 8 9.9990 -0.8040 -5.7093 20 8 8.1002 0.0542 -6.4827 21 16 6.3438 -1.4218 -4.2959 22 6 4.1311 -2.6025 -0.0473 23 1 -0.4850 0.8401 0.0004 24 1 3.7022 0.5402 1.0281 25 1 3.4728 -1.2580 -2.2145 26 1 4.5845 0.0042 -1.5240 27 1 5.5556 -3.9552 -1.7390 28 1 4.4336 -3.0151 -2.7517 29 1 8.0674 -3.4710 -1.9514 30 1 9.7306 -2.4297 -3.5758 31 1 8.6109 0.5151 -7.1624 32 1 4.5837 -2.9151 0.8937 33 1 3.4714 -3.3583 -0.4736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334041600.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = -79.425943 kcal Electronic energy + Delta-G solvation = -19546.091164 eV Core-core repulsion = 16278.347807 eV Total energy + Delta-G solvation = -3267.743357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19307 -41.07283 -38.85927 -37.11279 -36.65796 -34.53180 -32.84507 -29.88497 -28.08705 -27.11172 -25.75815 -23.69544 -23.15703 -20.89650 -20.12300 -19.72180 -19.31034 -18.24729 -18.03917 -17.09502 -16.98563 -16.74678 -16.20981 -15.82063 -15.33583 -15.03144 -14.83060 -14.43245 -14.11538 -13.94904 -13.72354 -13.60463 -13.16095 -12.82371 -12.69985 -12.63856 -12.42180 -12.28250 -11.95316 -11.81582 -11.73190 -11.18473 -10.94524 -10.50721 -9.85508 -9.70230 -9.58336 -8.43988 -6.54015 -0.70018 0.39872 0.89683 1.16998 1.22789 1.29002 1.37210 1.88638 2.01552 2.17093 2.80232 2.98116 3.49685 3.69630 3.97603 4.09290 4.15223 4.18585 4.29348 4.37766 4.55017 4.63924 4.77591 4.91890 5.01716 5.09956 5.15557 5.26594 5.33492 5.37500 5.44543 6.02795 6.11426 6.52082 6.78248 6.86240 7.14493 8.71677 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025006 B = 0.004503 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.448680 B = 6216.044892 C = 6768.760451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.027 3.973 3 Si 0.914 3.086 4 H -0.256 1.256 5 H -0.233 1.233 6 H -0.284 1.284 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.182 3.818 10 O -0.558 6.558 11 C -0.023 4.023 12 N -0.470 5.470 13 C 0.078 3.922 14 C -0.174 4.174 15 C -0.147 4.147 16 C -0.032 4.032 17 C -0.299 4.299 18 C 0.567 3.433 19 O -0.541 6.541 20 O -0.508 6.508 21 S 0.251 5.749 22 C 0.033 3.967 23 H 0.272 0.728 24 H 0.351 0.649 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.061 0.939 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.437 0.563 32 H 0.091 0.909 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.706 -2.839 -10.648 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.173 4.173 3 Si 0.739 3.261 4 H -0.182 1.182 5 H -0.157 1.157 6 H -0.211 1.211 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.142 3.858 10 O -0.369 6.369 11 C -0.152 4.152 12 N -0.193 5.193 13 C -0.051 4.051 14 C -0.295 4.295 15 C -0.177 4.177 16 C -0.067 4.067 17 C -0.417 4.417 18 C 0.412 3.588 19 O -0.434 6.434 20 O -0.322 6.322 21 S 0.520 5.480 22 C -0.095 4.095 23 H 0.081 0.919 24 H 0.202 0.798 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.080 0.920 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.300 0.700 32 H 0.110 0.890 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.380 -2.611 -10.795 18.169 hybrid contribution 0.197 0.600 -0.042 0.633 sum 14.576 -2.011 -10.838 18.275 Atomic orbital electron populations 1.70009 1.07960 1.28596 1.50066 1.25792 0.95533 1.02812 0.93173 0.86404 0.80186 0.79567 0.79967 1.18186 1.15684 1.21058 1.21602 0.90620 0.94194 1.51995 0.92976 1.20632 0.90167 0.90158 0.84873 1.86447 1.67301 1.25652 1.57477 1.25015 0.93453 0.96924 0.99814 1.68566 1.33322 1.07835 1.09602 1.21322 0.93802 0.97844 0.92170 1.24435 1.00104 1.03263 1.01673 1.20116 0.90581 1.04691 1.02328 1.20952 1.02174 0.92406 0.91136 1.23595 0.99019 1.13201 1.05920 1.19312 0.84262 0.75754 0.79461 1.90920 1.15749 1.63610 1.73093 1.84580 1.45313 1.58819 1.43512 1.83334 1.01082 1.41224 1.22310 1.23971 0.92669 0.95571 0.97306 0.91912 0.79782 0.90612 0.90802 0.86747 0.92048 0.81659 0.81601 0.70038 0.89049 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.96 21.45 0.30 -53.88 16 2 C 0.03 1.48 5.47 84.66 0.46 1.95 16 3 Si 0.91 39.79 24.30 68.60 1.67 41.46 16 4 H -0.26 -10.64 7.05 99.48 0.70 -9.94 16 5 H -0.23 -9.36 5.15 99.48 0.51 -8.85 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.55 -29.11 9.19 25.60 0.24 -28.88 16 8 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 9 C 0.18 8.17 1.05 -10.89 -0.01 8.16 16 10 O -0.56 -25.90 13.35 -148.98 -1.99 -27.89 16 11 C -0.02 -0.88 6.44 86.37 0.56 -0.33 16 12 N -0.47 -16.03 6.14 -914.78 -5.62 -21.65 16 13 C 0.08 2.06 5.23 85.56 0.45 2.51 16 14 C -0.17 -4.32 5.84 24.69 0.14 -4.18 16 15 C -0.15 -3.23 9.99 21.08 0.21 -3.02 16 16 C -0.03 -0.71 10.01 21.73 0.22 -0.49 16 17 C -0.30 -7.21 6.45 24.05 0.16 -7.05 16 18 C 0.57 13.37 8.30 69.94 0.58 13.95 16 19 O -0.54 -15.14 17.63 19.38 0.34 -14.80 16 20 O -0.51 -8.85 13.29 -58.06 -0.77 -9.62 16 21 S 0.25 6.07 22.87 -56.49 -1.29 4.78 16 22 C 0.03 1.22 7.34 86.41 0.63 1.86 16 23 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 24 H 0.35 15.55 3.57 -74.06 -0.26 15.28 16 25 H 0.08 2.90 7.44 -2.38 -0.02 2.88 16 26 H 0.07 2.91 6.82 -2.39 -0.02 2.89 16 27 H 0.11 2.51 8.08 -2.39 -0.02 2.49 16 28 H 0.06 1.61 7.39 -2.39 -0.02 1.59 16 29 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.44 3.11 9.11 -74.05 -0.67 2.43 16 32 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.09 2.98 7.88 -2.38 -0.02 2.96 16 Total: -1.00 -66.89 297.08 -3.70 -70.59 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.03 Total: 26.53 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 3.63 Total: -15.52 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -5.32 Total: -75.53 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -2.42 Total: -52.31 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.67 Total: 41.46 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.29 Total: 4.78 kcal Total: -66.89 -3.70 -70.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334041600.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.836 kcal (2) G-P(sol) polarization free energy of solvation -66.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds