Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47326 * 317.58417 * 3 2 1 5 5 C 1.36940 * 119.99992 * 265.22278 * 4 3 2 6 6 H 1.08002 * 120.00086 * 149.41997 * 5 4 3 7 7 C 1.38813 * 119.99651 * 329.42603 * 5 4 3 8 8 N 1.31616 * 120.00195 * 332.53506 * 7 5 4 9 9 Si 1.86801 * 119.99800 * 152.54481 * 7 5 4 10 10 H 1.48499 * 109.47200 * 84.99546 * 9 7 5 11 11 H 1.48498 * 109.47014 * 204.99146 * 9 7 5 12 12 H 1.48496 * 109.47050 * 324.99149 * 9 7 5 13 13 C 1.46493 * 120.00054 * 85.22191 * 4 3 2 14 14 C 1.50700 * 109.47384 * 90.00161 * 13 4 3 15 15 C 1.34497 * 125.78137 * 89.99937 * 14 13 4 16 16 C 1.41401 * 106.85172 * 180.02562 * 15 14 13 17 17 C 1.34622 * 106.82717 * 359.97438 * 16 15 14 18 18 Br 1.89099 * 125.79238 * 180.02562 * 17 16 15 19 19 O 1.34305 * 108.40743 * 359.73743 * 17 16 15 20 20 H 4.40637 * 5.51367 * 179.97438 * 4 1 2 21 21 H 1.08998 * 109.47266 * 197.58315 * 3 2 1 22 22 H 1.08999 * 109.47564 * 77.58238 * 3 2 1 23 23 H 0.96995 * 120.00242 * 179.97438 * 8 7 5 24 24 H 1.09006 * 109.47199 * 210.00460 * 13 4 3 25 25 H 1.09004 * 109.47197 * 330.00010 * 13 4 3 26 26 H 1.07999 * 126.57260 * 359.97438 * 15 14 13 27 27 H 1.07990 * 126.58210 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0189 0.9317 5 6 3.4561 -0.6738 2.2174 6 1 3.3369 -1.3921 3.0151 7 6 3.9347 0.5992 2.4953 8 7 4.5810 1.2759 1.5698 9 14 3.6617 1.3517 4.1832 10 1 4.7350 0.9013 5.1054 11 1 3.6908 2.8325 4.0755 12 1 2.3424 0.9195 4.7103 13 6 3.2800 -2.4074 0.4879 14 6 4.6646 -2.6143 -0.0700 15 6 5.7450 -3.0020 0.6309 16 6 6.8235 -3.0675 -0.2812 17 6 6.3368 -2.7162 -1.4862 18 35 7.3267 -2.6236 -3.0947 19 8 5.0273 -2.4488 -1.3531 20 1 -1.0497 -0.0001 0.0004 21 1 3.0089 0.9804 0.3104 22 1 3.0095 -0.2202 -1.0036 23 1 4.9151 2.1656 1.7639 24 1 3.1252 -3.0773 1.3337 25 1 2.5413 -2.6210 -0.2847 26 1 5.7820 -3.2204 1.6879 27 1 7.8418 -3.3467 -0.0548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335565957.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = 85.749412 kcal Electronic energy + Delta-G solvation = -14403.990041 eV Core-core repulsion = 11791.104738 eV Total energy + Delta-G solvation = -2612.885303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.42323 -38.00405 -34.14033 -33.97514 -33.71863 -32.59770 -30.38212 -28.11540 -26.91441 -23.68481 -22.74659 -21.28803 -19.47862 -18.55022 -17.84326 -17.27640 -16.72141 -15.73684 -15.68216 -15.43023 -14.78065 -13.94268 -13.75862 -13.69261 -13.62173 -13.14917 -12.72874 -12.53795 -12.36497 -12.26168 -12.06762 -11.62362 -11.14629 -10.96141 -10.78263 -10.49473 -9.30588 -8.93221 -8.00286 -5.49006 -0.06558 0.62875 1.44903 1.49766 1.57546 1.65858 2.06569 2.14397 2.47907 2.50749 3.16685 3.73461 3.88061 4.06281 4.09426 4.49077 4.67980 4.75044 4.81947 4.96238 5.00699 5.35170 5.42506 5.57326 5.63016 6.12167 6.28012 6.92858 6.97402 7.64317 8.15862 9.02484 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.005477 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.887931 B = 5111.117764 C = 5636.140218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.212 4.212 3 C 0.235 3.765 4 N -0.573 5.573 5 C -0.274 4.274 6 H 0.076 0.924 7 C -0.030 4.030 8 N -0.909 5.909 9 Si 0.957 3.043 10 H -0.278 1.278 11 H -0.293 1.293 12 H -0.273 1.273 13 C 0.211 3.789 14 C 0.007 3.993 15 C -0.219 4.219 16 C -0.149 4.149 17 C -0.070 4.070 18 Br 0.056 6.944 19 O -0.183 6.183 20 H 0.248 0.752 21 H 0.094 0.906 22 H 0.048 0.952 23 H 0.255 0.745 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.157 0.843 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -8.481 -7.094 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.214 4.214 3 C 0.109 3.891 4 N -0.291 5.291 5 C -0.403 4.403 6 H 0.093 0.907 7 C -0.228 4.228 8 N -0.552 5.552 9 Si 0.784 3.216 10 H -0.204 1.204 11 H -0.219 1.219 12 H -0.198 1.198 13 C 0.084 3.916 14 C -0.048 4.048 15 C -0.240 4.240 16 C -0.171 4.171 17 C -0.198 4.198 18 Br 0.139 6.861 19 O -0.080 6.080 20 H 0.264 0.736 21 H 0.111 0.889 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.089 0.911 26 H 0.175 0.825 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.177 -8.194 -7.911 11.824 hybrid contribution 0.016 0.718 1.090 1.306 sum 3.192 -7.476 -6.821 10.611 Atomic orbital electron populations 1.25550 0.96416 1.01448 1.01372 1.25143 0.96473 1.00021 0.99770 1.17910 0.82233 0.96737 0.92174 1.44162 1.71343 1.03805 1.09744 1.19379 1.38115 0.98694 0.84162 0.90673 1.25732 0.96455 0.99978 1.00635 1.70168 1.35485 1.13226 1.36302 0.85471 0.78525 0.77109 0.80450 1.20419 1.21912 1.19780 1.20007 0.86127 0.87632 0.97849 1.24814 1.01436 0.98791 0.79808 1.21712 0.91977 1.09097 1.01213 1.21930 1.01482 1.03404 0.90288 1.24099 0.84887 1.14582 0.96194 1.96692 1.64670 1.98081 1.26648 1.84051 1.24179 1.69304 1.30505 0.73563 0.88881 0.93427 0.93535 0.87805 0.91141 0.82540 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.15 19.25 74.32 1.43 -6.72 15 2 C -0.21 -9.14 13.67 31.12 0.43 -8.72 15 3 C 0.23 11.35 5.74 84.57 0.49 11.83 15 4 N -0.57 -27.55 2.42 -716.90 -1.73 -29.28 15 5 C -0.27 -14.18 9.48 84.03 0.80 -13.39 15 6 H 0.08 3.75 7.96 -2.91 -0.02 3.72 15 7 C -0.03 -1.58 4.82 84.86 0.41 -1.17 15 8 N -0.91 -51.54 11.44 21.65 0.25 -51.29 15 9 Si 0.96 42.97 29.63 68.60 2.03 45.00 15 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 13 C 0.21 8.46 6.21 85.63 0.53 8.99 15 14 C 0.01 0.28 6.90 24.83 0.17 0.45 15 15 C -0.22 -8.36 10.81 22.19 0.24 -8.12 15 16 C -0.15 -5.15 10.86 22.22 0.24 -4.91 15 17 C -0.07 -2.54 7.80 66.99 0.52 -2.02 15 18 Br 0.06 1.56 34.09 -20.37 -0.69 0.87 15 19 O -0.18 -7.58 10.65 -3.01 -0.03 -7.61 15 20 H 0.25 6.06 7.80 -4.43 -0.03 6.03 15 21 H 0.09 5.10 5.30 -2.39 -0.01 5.09 15 22 H 0.05 2.27 8.11 -2.39 -0.02 2.25 15 23 H 0.26 14.03 8.31 -92.71 -0.77 13.26 15 24 H 0.10 3.74 8.04 -2.38 -0.02 3.72 15 25 H 0.07 2.61 8.07 -2.38 -0.02 2.59 15 26 H 0.16 5.56 8.06 -2.91 -0.02 5.54 15 27 H 0.18 4.85 8.06 -2.92 -0.02 4.82 15 Total: -1.00 -60.60 274.82 6.25 -54.35 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.17 Total: 11.74 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 5.25 Total: -23.77 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.48 Total: -80.58 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.03 Total: -7.61 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 35 Polarization: 1.56 SS G_CDS: -0.69 Total: 0.87 kcal Total: -60.60 6.25 -54.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335565957.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.099 kcal (2) G-P(sol) polarization free energy of solvation -60.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds