Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86794 * 119.99797 * 2 1 4 4 H 1.48499 * 109.47561 * 275.51705 * 3 2 1 5 5 H 1.48504 * 109.47406 * 35.52070 * 3 2 1 6 6 H 1.48505 * 109.47310 * 155.51825 * 3 2 1 7 7 C 1.38889 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00038 * 2.48791 * 7 2 1 9 9 N 1.37136 * 119.99546 * 182.48116 * 7 2 1 10 10 C 1.34774 * 119.99438 * 120.65596 * 9 7 2 11 11 O 1.21284 * 119.99703 * 175.64834 * 10 9 7 12 12 C 1.50699 * 120.00485 * 355.91494 * 10 9 7 13 13 H 1.08995 * 115.54939 * 331.23485 * 12 10 9 14 14 C 1.52994 * 117.50052 * 185.55548 * 12 10 9 15 15 C 1.52996 * 117.49620 * 116.93278 * 12 10 9 16 16 H 1.09005 * 117.50377 * 0.02562 * 15 12 10 17 17 F 1.39899 * 117.50035 * 214.98268 * 15 12 10 18 18 C 1.39804 * 120.00202 * 300.65278 * 9 7 2 19 19 C 1.38961 * 120.06423 * 185.60358 * 18 9 7 20 20 C 1.38072 * 119.93454 * 179.76541 * 19 18 9 21 21 C 1.38423 * 120.06540 * 0.50879 * 20 19 18 22 22 Cl 1.73597 * 119.93603 * 179.71920 * 21 20 19 23 23 C 1.38420 * 120.12674 * 359.74538 * 21 20 19 24 24 C 1.38067 * 120.06720 * 359.97438 * 23 21 20 25 25 H 0.96999 * 120.00402 * 0.02562 * 1 2 3 26 26 H 1.08999 * 117.49938 * 0.02562 * 14 12 10 27 27 H 1.09004 * 117.50006 * 145.00289 * 14 12 10 28 28 H 1.08001 * 120.03480 * 0.02562 * 19 18 9 29 29 H 1.08001 * 119.97082 * 180.25206 * 20 19 18 30 30 H 1.08004 * 119.96766 * 180.02562 * 23 21 20 31 31 H 1.07998 * 120.03551 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3791 2.1138 -1.3935 5 1 1.5088 2.6162 0.8134 6 1 3.5992 1.4094 0.5802 7 6 2.0087 -1.2028 0.0005 8 1 1.4695 -2.1377 -0.0396 9 7 3.3791 -1.2033 0.0520 10 6 4.0150 -1.8198 1.0678 11 8 5.2259 -1.8887 1.0724 12 6 3.2213 -2.4288 2.1948 13 1 2.2624 -1.9548 2.4042 14 6 4.0017 -2.9988 3.3809 15 6 3.3188 -3.9432 2.3896 16 1 3.9573 -4.4990 1.7029 17 9 2.1701 -4.6140 2.8230 18 6 4.1164 -0.5643 -0.9493 19 6 5.5025 -0.6621 -0.9631 20 6 6.2277 -0.0340 -1.9560 21 6 5.5761 0.7014 -2.9311 22 17 6.4918 1.4957 -4.1737 23 6 4.1959 0.8050 -2.9169 24 6 3.4650 0.1743 -1.9298 25 1 -0.4851 0.8400 -0.0004 26 1 5.0891 -2.9330 3.3463 27 1 3.5562 -2.8999 4.3708 28 1 6.0117 -1.2324 -0.2003 29 1 7.3047 -0.1131 -1.9696 30 1 3.6901 1.3791 -3.6791 31 1 2.3881 0.2558 -1.9190 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338955220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -23.013088 kcal Electronic energy + Delta-G solvation = -19951.516264 eV Core-core repulsion = 16560.715141 eV Total energy + Delta-G solvation = -3390.801124 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.67466 -42.01954 -39.71358 -37.72951 -36.77862 -36.58340 -34.25323 -32.08380 -30.80087 -27.40561 -25.73483 -23.76398 -23.36406 -22.82739 -21.14297 -20.03848 -18.73401 -17.86018 -17.77186 -17.27380 -16.73849 -16.15557 -15.96418 -15.70066 -15.35040 -15.25257 -14.94320 -14.50685 -14.43357 -14.31024 -13.57416 -13.49776 -13.27280 -13.00776 -12.82796 -12.39149 -12.27868 -12.03853 -11.79069 -11.47464 -11.23997 -11.13389 -10.84636 -10.29775 -9.90103 -8.89060 -8.56083 -6.64406 0.07494 0.28991 1.16801 1.19084 1.27711 1.34552 1.46579 2.04225 2.20475 2.61230 2.62808 2.84786 3.20648 3.60617 3.66520 3.89555 3.95307 4.00403 4.20552 4.36373 4.44597 4.64223 4.73582 4.98894 5.01066 5.09069 5.10412 5.32642 5.33560 5.44656 5.75212 5.95553 6.18372 6.74798 7.07213 7.38734 8.44441 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.018895 B = 0.006514 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.521293 B = 4297.711898 C = 5345.473795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.053 3.947 3 Si 0.920 3.080 4 H -0.238 1.238 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.360 4.360 8 H 0.085 0.915 9 N -0.416 5.416 10 C 0.527 3.473 11 O -0.558 6.558 12 C -0.202 4.202 13 H 0.126 0.874 14 C -0.132 4.132 15 C 0.047 3.953 16 H 0.148 0.852 17 F -0.190 7.190 18 C 0.142 3.858 19 C -0.186 4.186 20 C -0.083 4.083 21 C -0.077 4.077 22 Cl -0.068 7.068 23 C -0.088 4.088 24 C -0.179 4.179 25 H 0.286 0.714 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.187 0.813 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -0.318 -0.248 9.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.154 4.154 3 Si 0.746 3.254 4 H -0.162 1.162 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.487 4.487 8 H 0.102 0.898 9 N -0.124 5.124 10 C 0.321 3.679 11 O -0.442 6.442 12 C -0.223 4.223 13 H 0.144 0.856 14 C -0.170 4.170 15 C 0.011 3.989 16 H 0.165 0.835 17 F -0.170 7.170 18 C 0.046 3.954 19 C -0.205 4.205 20 C -0.102 4.102 21 C -0.105 4.105 22 Cl -0.039 7.039 23 C -0.107 4.107 24 C -0.199 4.199 25 H 0.096 0.904 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.203 0.797 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.411 -0.249 -0.295 9.419 hybrid contribution -0.636 0.902 -0.294 1.143 sum 8.774 0.653 -0.589 8.818 Atomic orbital electron populations 1.69696 1.07131 1.29714 1.45324 1.26018 0.95637 1.01006 0.92762 0.86362 0.78708 0.80176 0.80171 1.16172 1.21619 1.20111 1.18748 0.78200 0.95044 1.56720 0.89773 1.41412 1.06584 1.46655 1.17783 1.20243 0.86576 0.79049 0.82036 1.90157 1.14362 1.61542 1.78090 1.22696 1.03359 0.97927 0.98298 0.85601 1.23826 1.01695 0.97016 0.94442 1.22170 0.86528 0.87081 1.03139 0.83453 1.92790 1.52401 1.81104 1.90704 1.18906 0.92181 0.94357 0.89954 1.22895 0.92221 1.03419 1.01976 1.21268 1.01237 0.95294 0.92364 1.20896 0.91863 1.02953 0.94772 1.98316 1.73869 1.79120 1.52616 1.20948 0.92220 0.99209 0.98305 1.21070 1.01183 1.00966 0.96698 0.90367 0.85128 0.84922 0.79688 0.82546 0.83489 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.94 13.96 21.65 0.30 -46.64 16 2 C 0.05 2.71 4.60 84.91 0.39 3.10 16 3 Si 0.92 41.47 23.49 68.60 1.61 43.08 16 4 H -0.24 -9.91 6.01 99.48 0.60 -9.32 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.28 -13.11 6.59 99.48 0.66 -12.45 16 7 C -0.36 -18.18 7.73 84.02 0.65 -17.54 16 8 H 0.08 4.62 8.06 -2.91 -0.02 4.60 16 9 N -0.42 -19.29 2.20 -458.89 -1.01 -20.30 16 10 C 0.53 22.27 7.36 87.66 0.64 22.91 16 11 O -0.56 -23.11 12.66 -3.04 -0.04 -23.15 16 12 C -0.20 -7.32 5.35 -11.54 -0.06 -7.38 16 13 H 0.13 5.07 7.43 -2.39 -0.02 5.06 16 14 C -0.13 -3.52 10.03 30.59 0.31 -3.21 16 15 C 0.05 1.43 7.60 30.59 0.23 1.66 16 16 H 0.15 4.00 8.14 -2.38 -0.02 3.98 16 17 F -0.19 -6.26 17.60 44.97 0.79 -5.47 16 18 C 0.14 6.29 4.82 38.22 0.18 6.47 16 19 C -0.19 -7.31 9.05 22.40 0.20 -7.11 16 20 C -0.08 -2.74 9.82 22.27 0.22 -2.52 16 21 C -0.08 -2.54 6.32 22.36 0.14 -2.40 16 22 Cl -0.07 -1.83 28.95 -2.72 -0.08 -1.91 16 23 C -0.09 -3.14 9.64 22.27 0.21 -2.92 16 24 C -0.18 -7.56 5.52 22.40 0.12 -7.43 16 25 H 0.29 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.13 3.22 7.68 -2.39 -0.02 3.20 16 27 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 28 H 0.19 7.43 4.51 -63.90 -0.29 7.14 16 29 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.13 6.02 4.44 -2.91 -0.01 6.01 16 Total: -1.00 -55.37 279.23 5.57 -49.80 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.74 Total: 20.94 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 3.25 Total: -16.36 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -0.71 Total: -66.94 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.04 Total: -23.15 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.79 Total: -5.47 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.61 Total: 43.08 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -55.37 5.57 -49.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338955220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.787 kcal (2) G-P(sol) polarization free energy of solvation -55.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds