Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86797 * 120.00318 * 2 1 4 4 H 1.48500 * 109.46900 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47300 * 120.00181 * 3 2 1 6 6 H 1.48506 * 109.47249 * 240.00143 * 3 2 1 7 7 C 1.38889 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00123 * 162.33020 * 7 2 1 9 9 N 1.37136 * 119.99739 * 342.34111 * 7 2 1 10 10 C 1.34778 * 120.00137 * 160.75356 * 9 7 2 11 11 O 1.21277 * 119.99825 * 175.04710 * 10 9 7 12 12 C 1.50698 * 119.99685 * 355.04760 * 10 9 7 13 13 H 1.09001 * 115.55340 * 34.33036 * 12 10 9 14 14 C 1.52997 * 117.49801 * 248.62063 * 12 10 9 15 15 C 1.52995 * 60.00238 * 252.51254 * 14 12 10 16 16 H 1.09002 * 117.50161 * 252.51140 * 15 14 12 17 17 F 1.39903 * 117.51755 * 107.47987 * 15 14 12 18 18 C 1.39806 * 119.99934 * 340.74781 * 9 7 2 19 19 C 1.38963 * 120.06504 * 285.02191 * 18 9 7 20 20 C 1.38078 * 119.93382 * 179.72191 * 19 18 9 21 21 C 1.38416 * 120.06128 * 0.57116 * 20 19 18 22 22 Cl 1.73607 * 119.93246 * 179.70030 * 21 20 19 23 23 C 1.38417 * 120.13247 * 359.68553 * 21 20 19 24 24 C 1.38070 * 120.06241 * 0.03476 * 23 21 20 25 25 H 0.96997 * 119.99500 * 355.02923 * 1 2 3 26 26 H 1.08996 * 117.49941 * 0.02562 * 14 12 10 27 27 H 1.09005 * 117.50099 * 145.02680 * 14 12 10 28 28 H 1.08003 * 120.03125 * 359.97438 * 19 18 9 29 29 H 1.07997 * 119.96295 * 180.29505 * 20 19 18 30 30 H 1.08005 * 119.96562 * 180.02562 * 23 21 20 31 31 H 1.08004 * 120.03050 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 1.2834 2.7464 -0.0006 5 1 3.1021 1.6963 1.2124 6 1 3.1021 1.6963 -1.2126 7 6 2.0087 -1.2028 0.0005 8 1 3.0505 -1.2250 -0.2833 9 7 1.3715 -2.3623 0.3613 10 6 1.8891 -3.5546 0.0052 11 8 1.3762 -4.5804 0.3995 12 6 3.1051 -3.6131 -0.8831 13 1 3.8300 -2.8116 -0.7411 14 6 2.9181 -4.1540 -2.3020 15 6 3.6447 -4.9965 -1.2518 16 1 4.7246 -5.1050 -1.3527 17 9 2.9717 -6.1103 -0.7381 18 6 0.1850 -2.3075 1.0987 19 6 0.2206 -1.9980 2.4530 20 6 -0.9534 -1.9390 3.1774 21 6 -2.1639 -2.1993 2.5585 22 17 -3.6372 -2.1317 3.4743 23 6 -2.2020 -2.5130 1.2109 24 6 -1.0318 -2.5678 0.4802 25 1 -0.4849 0.8369 0.0728 26 1 1.9155 -4.4671 -2.5931 27 1 3.5200 -3.7082 -3.0939 28 1 1.1653 -1.7999 2.9375 29 1 -0.9267 -1.6939 4.2288 30 1 -3.1480 -2.7152 0.7306 31 1 -1.0621 -2.8122 -0.5714 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338955221.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = -23.805322 kcal Electronic energy + Delta-G solvation = -19954.819197 eV Core-core repulsion = 16563.983720 eV Total energy + Delta-G solvation = -3390.835477 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.96917 -39.57320 -37.79870 -36.03512 -35.09614 -34.61458 -31.75854 -30.23958 -28.95328 -25.13535 -24.13850 -22.06802 -21.93986 -21.14097 -19.19381 -17.78919 -17.20850 -16.12952 -15.33483 -15.07561 -14.90643 -14.73489 -14.20918 -13.99020 -13.47231 -13.38020 -12.80871 -12.70557 -12.60316 -12.27521 -11.94810 -11.61494 -11.46012 -11.25655 -11.01908 -10.78103 -10.57600 -10.50718 -10.22062 -9.92917 -9.56383 -9.47004 -8.71043 -8.23266 -8.15890 -7.61941 -6.38663 -4.15669 2.06066 2.22153 2.76187 3.01852 3.13220 3.14792 3.37183 3.88810 4.08982 4.36109 4.54780 4.64000 4.94267 5.13776 5.26723 5.43406 5.60020 5.62042 5.82549 5.98766 6.16839 6.25574 6.30891 6.41787 6.49894 6.75257 6.87108 7.01241 7.23440 7.39475 7.49077 7.73048 8.26136 8.89447 9.21434 9.65596 10.50633 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.007321 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.470572 B = 3823.893173 C = 5448.019749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.046 3.954 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.351 4.351 8 H 0.103 0.897 9 N -0.411 5.411 10 C 0.493 3.507 11 O -0.575 6.575 12 C -0.168 4.168 13 H 0.132 0.868 14 C -0.166 4.166 15 C 0.033 3.967 16 H 0.130 0.870 17 F -0.169 7.169 18 C 0.244 3.756 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.053 4.053 22 Cl -0.103 7.103 23 C -0.108 4.108 24 C -0.058 4.058 25 H 0.274 0.726 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -1.412 -0.459 2.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.161 4.161 3 Si 0.742 3.258 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.477 4.477 8 H 0.120 0.880 9 N -0.127 5.127 10 C 0.283 3.717 11 O -0.458 6.458 12 C -0.189 4.189 13 H 0.150 0.850 14 C -0.204 4.204 15 C -0.003 4.003 16 H 0.147 0.853 17 F -0.149 7.149 18 C 0.153 3.847 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.079 4.079 22 Cl -0.075 7.075 23 C -0.127 4.127 24 C -0.078 4.078 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.595 -1.781 -0.242 2.403 hybrid contribution 0.207 1.296 0.049 1.313 sum 1.803 -0.485 -0.193 1.877 Atomic orbital electron populations 1.69944 1.05792 1.28546 1.44024 1.25230 0.95329 0.99720 0.95864 0.86168 0.79294 0.81261 0.79058 1.20773 1.19770 1.19716 1.19524 0.95411 0.83789 1.48973 0.87955 1.41235 1.20367 1.05601 1.45534 1.19169 0.86029 0.83096 0.83425 1.90658 1.63586 1.33564 1.58023 1.22749 1.00606 0.97545 0.98016 0.84997 1.23508 1.03099 1.01875 0.91939 1.22001 0.94931 0.81398 1.02008 0.85272 1.92857 1.82069 1.52493 1.87519 1.17232 0.86295 0.92046 0.89162 1.20997 0.97357 1.01511 0.93621 1.20579 0.90638 1.02216 0.99440 1.20596 0.86010 1.08806 0.92494 1.98292 1.36856 1.97422 1.74889 1.20602 0.98320 1.01926 0.91889 1.20796 0.90814 0.97450 0.98747 0.91537 0.87785 0.87093 0.86198 0.86247 0.86245 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.04 10.66 55.49 0.59 -20.44 16 2 C 0.05 1.09 5.20 -17.48 -0.09 1.00 16 3 Si 0.92 18.47 29.59 -169.99 -5.03 13.44 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.35 -8.26 9.07 -14.94 -0.14 -8.40 16 8 H 0.10 2.21 6.07 -52.49 -0.32 1.89 16 9 N -0.41 -9.87 2.66 -58.98 -0.16 -10.03 16 10 C 0.49 11.53 7.33 -10.99 -0.08 11.45 16 11 O -0.58 -15.07 15.09 5.56 0.08 -14.98 16 12 C -0.17 -3.08 5.33 -91.77 -0.49 -3.57 16 13 H 0.13 2.17 6.53 -51.93 -0.34 1.83 16 14 C -0.17 -2.56 10.22 -26.74 -0.27 -2.83 16 15 C 0.03 0.53 7.82 -26.73 -0.21 0.32 16 16 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 17 F -0.17 -3.39 15.71 2.25 0.04 -3.36 16 18 C 0.24 5.80 2.40 -83.69 -0.20 5.60 16 19 C -0.11 -2.53 9.93 -39.37 -0.39 -2.93 16 20 C -0.11 -2.16 9.82 -39.57 -0.39 -2.55 16 21 C -0.05 -1.03 6.32 -39.45 -0.25 -1.28 16 22 Cl -0.10 -1.71 28.95 -51.86 -1.50 -3.21 16 23 C -0.11 -2.19 9.82 -39.58 -0.39 -2.58 16 24 C -0.06 -1.33 8.73 -39.38 -0.34 -1.68 16 25 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 26 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 27 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 29 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.12 2.13 8.06 -52.48 -0.42 1.70 16 31 H 0.12 2.69 8.06 -52.48 -0.42 2.26 16 LS Contribution 293.55 15.07 4.42 4.42 Total: -1.00 -28.48 293.55 -7.55 -36.03 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -2.75 Total: 5.56 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -3.24 Total: -7.43 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.43 Total: -30.47 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.50 Total: -3.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.48 -7.55 -36.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338955221.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.222 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds