Wall clock time and date at job start Tue Mar 31 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99828 * 2 1 4 4 H 1.48502 * 109.46955 * 240.00125 * 3 2 1 5 5 H 1.48498 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47237 * 120.00433 * 3 2 1 7 7 C 1.37875 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99736 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.28551 * 46.93063 * 9 7 2 11 11 C 1.53498 * 114.20488 * 179.97438 * 9 7 2 12 12 N 1.47068 * 87.98577 * 139.65126 * 11 9 7 13 13 C 1.34773 * 136.05956 * 152.84666 * 12 11 9 14 14 O 1.21523 * 119.99939 * 359.97438 * 13 12 11 15 15 C 1.48149 * 120.00231 * 179.72211 * 13 12 11 16 16 C 1.39393 * 120.08485 * 179.97438 * 15 13 12 17 17 N 1.32109 * 119.90368 * 179.68996 * 16 15 13 18 18 C 1.32097 * 120.09140 * 0.60660 * 17 16 15 19 19 C 1.38915 * 120.17026 * 359.66576 * 18 17 16 20 20 Cl 1.73604 * 119.95067 * 179.97438 * 19 18 17 21 21 N 1.31890 * 120.09445 * 0.02562 * 19 18 17 22 22 C 1.47071 * 87.88415 * 333.09782 * 12 11 9 23 23 H 0.97002 * 120.00686 * 359.97438 * 1 2 3 24 24 H 0.96700 * 113.99692 * 313.06923 * 10 9 7 25 25 H 1.09001 * 113.46877 * 24.86945 * 11 9 7 26 26 H 1.08998 * 113.52107 * 254.43827 * 11 9 7 27 27 H 1.07994 * 120.04990 * 359.97438 * 16 15 13 28 28 H 1.07997 * 119.91629 * 179.69418 * 18 17 16 29 29 H 1.09003 * 113.46733 * 141.67429 * 22 12 11 30 30 H 1.09001 * 113.47022 * 272.12154 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 0.1927 -2.5395 -0.9610 11 6 2.1488 -3.7442 -0.0028 12 7 1.2100 -4.3583 0.9482 13 6 0.8348 -5.6124 1.2687 14 8 1.3293 -6.5607 0.6917 15 6 -0.1765 -5.8351 2.3282 16 6 -0.5663 -7.1315 2.6606 17 7 -1.4639 -7.3263 3.6102 18 6 -2.0006 -6.2942 4.2360 19 6 -1.6189 -5.0005 3.9036 20 17 -2.3284 -3.6482 4.7292 21 7 -0.7189 -4.7982 2.9609 22 6 0.8563 -3.0012 1.3913 23 1 -0.4851 0.8400 0.0004 24 1 -0.3709 -1.7538 -0.9581 25 1 3.1385 -3.5661 0.4178 26 1 2.1858 -4.2530 -0.9661 27 1 -0.1318 -7.9756 2.1459 28 1 -2.7377 -6.4565 5.0084 29 1 -0.2044 -2.8789 1.6106 30 1 1.4982 -2.6232 2.1870 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339437930.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:30 Heat of formation + Delta-G solvation = 7.198964 kcal Electronic energy + Delta-G solvation = -19723.737275 eV Core-core repulsion = 16354.166206 eV Total energy + Delta-G solvation = -3369.571069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38471 -39.49553 -37.53352 -36.91976 -34.67625 -33.99090 -32.19582 -31.64543 -28.92052 -26.08024 -25.13855 -25.03811 -24.24431 -20.75825 -19.03920 -18.06922 -17.62845 -17.18297 -16.71985 -15.73934 -15.61896 -15.41690 -15.02324 -14.48314 -14.15654 -13.43569 -13.16753 -12.73864 -12.53239 -12.38240 -12.05230 -11.93763 -11.56037 -11.55786 -11.20391 -11.06157 -11.00909 -10.50871 -10.31562 -10.20990 -9.45745 -9.41398 -9.24189 -8.78984 -8.39599 -7.95451 -6.40336 -4.50819 0.15527 0.70569 1.47075 2.79462 3.14127 3.16230 3.22249 3.25381 3.67290 3.87464 4.01132 4.05725 4.18092 4.77119 4.82935 4.94070 5.01539 5.53586 5.79617 5.95637 6.09551 6.36388 6.53243 6.54345 6.76250 6.85698 7.08686 7.30422 7.62367 7.78658 8.24343 8.48182 8.52646 9.20074 9.47453 10.66566 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.005633 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.225563 B = 4969.274903 C = 6113.791544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.237 3.763 10 O -0.572 6.572 11 C 0.107 3.893 12 N -0.607 5.607 13 C 0.587 3.413 14 O -0.550 6.550 15 C 0.072 3.928 16 C 0.103 3.897 17 N -0.424 5.424 18 C 0.084 3.916 19 C 0.121 3.879 20 Cl -0.006 7.006 21 N -0.392 5.392 22 C 0.084 3.916 23 H 0.275 0.725 24 H 0.395 0.605 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.191 0.809 28 H 0.183 0.817 29 H 0.078 0.922 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 -6.871 8.952 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.195 3.805 10 O -0.385 6.385 11 C -0.014 4.014 12 N -0.337 5.337 13 C 0.373 3.627 14 O -0.430 6.430 15 C -0.070 4.070 16 C -0.057 4.057 17 N -0.138 5.138 18 C -0.078 4.078 19 C -0.049 4.049 20 Cl 0.022 6.978 21 N -0.112 5.112 22 C -0.039 4.039 23 H 0.085 0.915 24 H 0.251 0.749 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.208 0.792 28 H 0.200 0.800 29 H 0.097 0.903 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.783 -7.888 8.606 12.271 hybrid contribution -0.015 1.663 0.438 1.720 sum -3.797 -6.225 9.044 11.617 Atomic orbital electron populations 1.69253 1.06197 1.28340 1.49826 1.25067 0.95012 0.99902 0.92964 0.86367 0.79483 0.81560 0.78986 1.19814 1.20977 1.19872 1.21349 0.93838 0.89640 1.52448 0.90941 1.19532 0.85427 0.90917 0.84605 1.86030 1.45184 1.48509 1.58807 1.23484 0.93827 0.92176 0.91956 1.49611 1.40575 1.04809 1.38684 1.16963 0.81698 0.82220 0.81842 1.90762 1.57328 1.40850 1.54058 1.22407 0.97565 0.89952 0.97079 1.23935 0.91876 0.97480 0.92415 1.68726 1.07096 1.32364 1.05635 1.23875 0.98334 0.86822 0.98752 1.22984 0.96305 0.90097 0.95516 1.98444 1.80216 1.44606 1.74543 1.68008 1.05211 1.34442 1.03540 1.24241 1.01766 0.76045 1.01835 0.91487 0.74869 0.89129 0.91099 0.79204 0.80001 0.90340 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.64 11.01 55.43 0.61 -22.03 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 3 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.53 -13.22 8.69 -34.44 -0.30 -13.52 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.24 5.66 1.57 -91.39 -0.14 5.52 16 10 O -0.57 -14.76 13.54 -35.23 -0.48 -15.23 16 11 C 0.11 2.29 8.03 -8.50 -0.07 2.22 16 12 N -0.61 -12.92 3.69 -186.37 -0.69 -13.61 16 13 C 0.59 11.86 8.06 -12.19 -0.10 11.76 16 14 O -0.55 -11.84 17.12 5.35 0.09 -11.75 16 15 C 0.07 1.23 6.75 -82.85 -0.56 0.67 16 16 C 0.10 1.46 10.77 -17.00 -0.18 1.28 16 17 N -0.42 -5.47 10.49 -12.68 -0.13 -5.60 16 18 C 0.08 0.96 11.02 -17.19 -0.19 0.77 16 19 C 0.12 1.67 7.29 -17.28 -0.13 1.54 16 20 Cl -0.01 -0.08 29.13 -51.86 -1.51 -1.59 16 21 N -0.39 -6.69 8.20 -6.76 -0.06 -6.74 16 22 C 0.08 1.84 6.90 -8.63 -0.06 1.78 16 23 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 24 H 0.39 10.33 6.32 45.56 0.29 10.62 16 25 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 26 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.19 2.38 7.65 -52.49 -0.40 1.98 16 28 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.08 1.81 7.19 -51.93 -0.37 1.43 16 30 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -27.88 288.20 -6.38 -34.26 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -1.72 Total: 9.96 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: -1.82 Total: 13.74 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.27 Total: -47.98 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.39 Total: -26.98 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.51 Total: -1.59 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.88 -6.38 -34.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339437930.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.464 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds