Wall clock time and date at job start Tue Mar 31 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48504 * 109.47291 * 240.00619 * 3 2 1 5 5 H 1.48507 * 109.46816 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47246 * 120.00152 * 3 2 1 7 7 C 1.38779 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99910 * 179.97438 * 7 2 1 9 9 O 1.34864 * 120.00477 * 0.02562 * 7 2 1 10 10 C 1.34775 * 117.00453 * 179.97438 * 9 7 2 11 11 O 1.21541 * 119.99450 * 359.97438 * 10 9 7 12 12 C 1.47416 * 119.99896 * 179.97438 * 10 9 7 13 13 C 1.41870 * 119.98973 * 0.02562 * 12 10 9 14 14 C 1.35618 * 119.58891 * 179.97438 * 13 12 10 15 15 C 1.41067 * 119.41830 * 0.28240 * 14 13 12 16 16 N 1.32185 * 133.24074 * 180.51925 * 15 14 13 17 17 N 1.28652 * 109.57301 * 179.48386 * 16 15 14 18 18 C 1.30721 * 110.34230 * 359.70077 * 17 16 15 19 19 C 1.50693 * 126.27599 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.47629 * 119.97507 * 19 18 17 21 21 F 1.39903 * 109.47191 * 239.97574 * 19 18 17 22 22 N 1.36274 * 107.45139 * 0.02562 * 18 17 16 23 23 C 1.35819 * 133.52399 * 180.02562 * 22 18 17 24 24 H 0.97009 * 119.99822 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.20933 * 359.97438 * 13 12 10 26 26 H 1.08002 * 120.28736 * 179.97438 * 14 13 12 27 27 H 1.08998 * 109.47055 * 359.97206 * 19 18 17 28 28 H 1.07998 * 119.81181 * 359.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1020 1.6964 -1.2126 5 1 1.2833 2.7464 0.0006 6 1 3.1021 1.6963 1.2125 7 6 2.0081 -1.2019 -0.0005 8 1 3.0881 -1.2019 -0.0010 9 8 1.3339 -2.3699 -0.0016 10 6 2.0678 -3.5002 -0.0026 11 8 3.2816 -3.4366 -0.0030 12 6 1.3985 -4.8137 -0.0032 13 6 -0.0183 -4.8876 -0.0033 14 6 -0.6256 -6.1002 -0.0043 15 6 0.1628 -7.2700 0.0007 16 7 -0.1295 -8.5590 -0.0077 17 7 0.9573 -9.2475 -0.0082 18 6 1.9971 -8.4552 -0.0068 19 6 3.4426 -8.8811 -0.0074 20 9 4.0763 -8.3789 -1.1490 21 9 4.0764 -8.3818 1.1355 22 7 1.5342 -7.1735 -0.0047 23 6 2.1428 -5.9593 -0.0030 24 1 -0.4850 0.8401 0.0004 25 1 -0.6096 -3.9838 -0.0025 26 1 -1.7034 -6.1696 -0.0040 27 1 3.5006 -9.9695 -0.0087 28 1 3.2211 -5.8991 -0.0029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340588455.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:53 Heat of formation + Delta-G solvation = -83.211148 kcal Electronic energy + Delta-G solvation = -21327.665963 eV Core-core repulsion = 17402.377737 eV Total energy + Delta-G solvation = -3925.288226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.33942 -48.34865 -44.98885 -41.34408 -39.37170 -37.37498 -35.58563 -34.39678 -33.07094 -31.61733 -28.12019 -27.80399 -26.11357 -24.86956 -23.30943 -22.61695 -20.30193 -19.86399 -19.02756 -18.83066 -18.55666 -17.97150 -17.88184 -17.69600 -17.08406 -16.69812 -16.25818 -16.01002 -15.21610 -15.17664 -14.69551 -14.46801 -14.26380 -14.04682 -13.68541 -13.61923 -13.25053 -13.10740 -12.69861 -12.61989 -12.44809 -12.19483 -12.13614 -12.09870 -11.39620 -11.04651 -10.75050 -9.58256 -8.63007 -6.38519 -0.99550 -0.50048 0.61219 0.86745 1.36161 1.37211 1.51074 1.59150 1.83169 2.06220 2.18949 2.46280 2.79387 2.83668 2.95021 3.10004 3.22083 3.40105 3.63226 3.70865 3.86273 4.18745 4.39379 4.50522 4.79472 4.80440 5.03204 5.09758 5.28485 5.71444 6.45139 6.81269 6.92801 7.55092 8.55740 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.004385 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.538873 B = 6383.699721 C = 7216.744320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.005 3.995 3 Si 1.016 2.984 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.417 4.417 8 H 0.089 0.911 9 O -0.214 6.214 10 C 0.439 3.561 11 O -0.572 6.572 12 C -0.100 4.100 13 C -0.040 4.040 14 C -0.074 4.074 15 C 0.212 3.788 16 N -0.301 5.301 17 N -0.214 5.214 18 C 0.053 3.947 19 C 0.372 3.628 20 F -0.193 7.193 21 F -0.194 7.194 22 N -0.378 5.378 23 C 0.127 3.873 24 H 0.284 0.716 25 H 0.171 0.829 26 H 0.205 0.795 27 H 0.206 0.794 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -12.795 -0.002 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.198 4.198 3 Si 0.835 3.165 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.107 0.893 9 O -0.121 6.121 10 C 0.287 3.713 11 O -0.471 6.471 12 C -0.105 4.105 13 C -0.064 4.064 14 C -0.094 4.094 15 C -0.035 4.035 16 N -0.148 5.148 17 N -0.056 5.056 18 C -0.209 4.209 19 C 0.317 3.683 20 F -0.175 7.175 21 F -0.175 7.175 22 N -0.057 5.057 23 C 0.002 3.998 24 H 0.093 0.907 25 H 0.189 0.811 26 H 0.222 0.778 27 H 0.222 0.778 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.859 -14.067 -0.011 14.093 hybrid contribution 1.220 2.063 0.009 2.397 sum 2.080 -12.004 -0.003 12.182 Atomic orbital electron populations 1.70017 1.07500 1.30008 1.44559 1.26507 0.96904 1.02099 0.94270 0.84694 0.77715 0.74245 0.79876 1.18585 1.18346 1.18591 1.21528 0.92606 0.80481 1.54636 0.89347 1.83871 1.39518 1.13617 1.75065 1.20681 0.85551 0.85677 0.79371 1.90657 1.15894 1.88147 1.52432 1.18696 0.95099 0.89711 1.06961 1.21611 0.91850 1.00012 0.92975 1.20600 1.02258 0.85319 1.01240 1.23021 0.81218 0.96755 1.02547 1.74927 1.18054 0.98434 1.23428 1.74027 0.93777 1.26076 1.11700 1.25836 1.00328 0.79136 1.15606 1.20050 0.76655 1.00436 0.71187 1.93076 1.82714 1.90418 1.51260 1.93077 1.82714 1.90510 1.51171 1.43535 1.09329 1.06588 1.46210 1.21561 1.00232 0.80645 0.97410 0.90687 0.81134 0.77850 0.77780 0.79576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.66 13.67 21.63 0.30 -47.37 15 2 C 0.01 0.26 5.49 84.88 0.47 0.73 15 3 Si 1.02 40.00 29.55 68.60 2.03 42.03 15 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 5 H -0.26 -9.42 7.11 99.48 0.71 -8.72 15 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 7 C -0.42 -23.34 9.65 67.95 0.66 -22.69 15 8 H 0.09 5.01 6.86 -2.91 -0.02 4.99 15 9 O -0.21 -11.43 9.01 10.80 0.10 -11.34 15 10 C 0.44 20.59 7.82 70.24 0.55 21.14 15 11 O -0.57 -29.30 15.52 19.70 0.31 -28.99 15 12 C -0.10 -3.58 5.84 -20.34 -0.12 -3.69 15 13 C -0.04 -1.19 9.62 22.56 0.22 -0.98 15 14 C -0.07 -1.82 10.09 22.36 0.23 -1.59 15 15 C 0.21 6.17 7.92 134.12 1.06 7.23 15 16 N -0.30 -9.23 12.29 -55.21 -0.68 -9.91 15 17 N -0.21 -6.13 12.18 -49.61 -0.60 -6.74 15 18 C 0.05 1.39 7.57 137.67 1.04 2.44 15 19 C 0.37 7.07 5.75 71.23 0.41 7.48 15 20 F -0.19 -4.29 17.32 44.97 0.78 -3.51 15 21 F -0.19 -4.29 17.32 44.97 0.78 -3.51 15 22 N -0.38 -11.20 2.94 -341.63 -1.00 -12.20 15 23 C 0.13 4.05 10.45 83.70 0.87 4.93 15 24 H 0.28 13.85 8.31 -92.70 -0.77 13.08 15 25 H 0.17 5.14 7.65 -2.91 -0.02 5.12 15 26 H 0.20 3.46 8.06 -2.91 -0.02 3.44 15 27 H 0.21 1.86 8.14 -2.39 -0.02 1.84 15 28 H 0.19 5.86 7.56 -2.91 -0.02 5.84 15 Total: -1.00 -68.12 277.90 8.62 -59.50 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.24 Total: 7.05 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.38 Total: 14.99 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.99 Total: -76.21 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: 0.40 Total: -40.33 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 1.56 Total: -7.03 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -68.12 8.62 -59.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340588455.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.716 kcal (2) G-P(sol) polarization free energy of solvation -68.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds