Wall clock time and date at job start Tue Mar 31 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.35601 * 119.26607 * 269.73157 * 11 10 9 13 13 C 1.35095 * 120.70121 * 179.71614 * 12 11 10 14 14 N 1.48023 * 120.37677 * 180.29714 * 13 12 11 15 15 O 1.21802 * 120.00323 * 0.22853 * 14 13 12 16 16 O 1.21806 * 119.99643 * 180.23039 * 14 13 12 17 17 C 1.41481 * 119.24173 * 0.52409 * 13 12 11 18 18 O 1.22252 * 120.67780 * 179.77194 * 17 13 12 19 19 C 1.41477 * 118.64213 * 359.74874 * 17 13 12 20 20 N 1.48023 * 120.37921 * 180.02562 * 19 17 13 21 21 O 1.21801 * 120.00107 * 179.97438 * 20 19 17 22 22 O 1.21796 * 119.99754 * 359.97438 * 20 19 17 23 23 C 1.35098 * 119.24605 * 359.97438 * 19 17 13 24 24 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 27 27 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 28 28 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 29 29 H 1.08006 * 119.64816 * 359.97438 * 12 11 10 30 30 H 1.07997 * 119.65099 * 179.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.1860 -5.5080 1.1815 13 6 0.5059 -6.6749 1.2148 14 7 0.1469 -7.2953 2.5099 15 8 0.4611 -6.7516 3.5536 16 8 -0.4627 -8.3496 2.5318 17 6 0.1450 -7.2994 -0.0023 18 8 -0.4669 -8.3578 -0.0028 19 6 0.5063 -6.6739 -1.2188 20 7 0.1477 -7.2934 -2.5144 21 8 0.4618 -6.7486 -3.5576 22 8 -0.4615 -8.3478 -2.5374 23 6 1.1814 -5.5042 -1.1844 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 -0.8905 28 1 2.8721 -3.6042 0.8895 29 1 1.4686 -5.0277 2.1067 30 1 1.4609 -5.0213 -2.1091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340607419.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:23 Heat of formation + Delta-G solvation = -21.574476 kcal Electronic energy + Delta-G solvation = -21796.698158 eV Core-core repulsion = 17985.170214 eV Total energy + Delta-G solvation = -3811.527944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.93477 -43.22591 -42.35378 -40.02433 -37.71156 -37.60849 -36.03345 -34.49273 -34.47558 -31.71818 -28.71020 -28.03329 -26.93504 -24.97227 -24.27215 -23.27424 -21.17826 -20.67383 -19.61380 -19.59963 -19.07171 -18.88259 -18.65924 -18.56680 -18.47009 -17.00846 -16.93466 -16.38337 -15.42586 -15.37436 -15.07239 -14.96275 -14.25235 -13.40660 -12.88008 -12.86753 -12.79008 -12.64956 -12.62825 -12.50529 -12.34734 -12.34084 -12.16045 -12.02414 -11.85205 -11.46634 -11.37872 -10.59869 -10.31718 -8.26641 -6.37515 -1.85039 -0.80569 -0.44296 -0.35845 0.06580 0.27239 0.87032 1.47195 1.50175 1.55250 1.61154 2.38892 2.40140 2.67238 2.75979 3.13083 3.18816 3.34784 3.84661 3.94436 4.19224 4.53161 4.63095 4.68811 4.99576 5.05126 5.39317 5.40170 5.71631 6.01423 6.03279 6.39121 6.40029 6.80765 7.35746 8.84178 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.004802 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.675712 B = 5829.488498 C = 7089.709383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.000 4.000 10 C 0.091 3.909 11 N -0.422 5.422 12 C 0.290 3.710 13 C -0.224 4.224 14 N 0.059 4.941 15 O -0.136 6.136 16 O -0.200 6.200 17 C 0.409 3.591 18 O -0.477 6.477 19 C -0.224 4.224 20 N 0.059 4.941 21 O -0.136 6.136 22 O -0.200 6.200 23 C 0.290 3.710 24 H 0.262 0.738 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.248 0.752 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.383 -4.047 0.001 10.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.104 0.896 9 C -0.037 4.037 10 C -0.024 4.024 11 N -0.104 5.104 12 C 0.156 3.844 13 C -0.317 4.317 14 N 0.573 4.427 15 O -0.357 6.357 16 O -0.403 6.403 17 C 0.293 3.707 18 O -0.357 6.357 19 C -0.317 4.317 20 N 0.573 4.427 21 O -0.357 6.357 22 O -0.403 6.403 23 C 0.156 3.844 24 H 0.071 0.929 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.264 0.736 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.280 -3.885 0.001 10.060 hybrid contribution -0.620 0.524 0.000 0.812 sum 8.660 -3.360 0.002 9.289 Atomic orbital electron populations 1.70049 1.07913 1.28013 1.51119 1.25798 0.95352 1.03170 0.94772 0.85627 0.78172 0.78673 0.79371 1.18976 1.22695 1.18988 1.21385 0.94420 0.90423 1.51016 0.89582 1.19518 0.94708 0.92186 0.97336 1.23466 0.94322 0.74472 1.10150 1.44560 1.42442 1.21402 1.01969 1.22599 0.81254 0.86889 0.93707 1.21761 1.21062 1.02831 0.86010 1.42757 0.98362 1.00189 1.01407 1.94482 1.56342 1.64222 1.20668 1.94697 1.41030 1.10448 1.94134 1.16343 0.80954 0.86934 0.86431 1.91075 1.34671 1.21136 1.88857 1.21761 1.21175 1.02725 0.86001 1.42753 0.98354 1.00195 1.01409 1.94482 1.56338 1.64160 1.20743 1.94695 1.41031 1.10446 1.94126 1.22596 0.81208 0.86948 0.93694 0.92908 0.97265 0.97282 0.83602 0.83580 0.73606 0.73620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -47.00 13.29 21.45 0.28 -46.71 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.96 35.56 29.54 68.60 2.03 37.59 16 4 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.30 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.27 -9.40 7.11 99.48 0.71 -8.70 16 7 C -0.53 -20.44 9.11 25.60 0.23 -20.21 16 8 H 0.09 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.00 0.01 5.30 29.85 0.16 0.16 16 10 C 0.09 1.28 5.49 86.38 0.47 1.76 16 11 N -0.42 -6.07 2.60 -525.37 -1.37 -7.44 16 12 C 0.29 4.72 9.79 83.39 0.82 5.53 16 13 C -0.22 -5.94 6.87 36.45 0.25 -5.69 16 14 N 0.06 1.85 4.45 -46.28 -0.21 1.65 16 15 O -0.14 -3.80 18.43 18.88 0.35 -3.46 16 16 O -0.20 -7.72 17.51 25.40 0.44 -7.27 16 17 C 0.41 13.32 6.75 23.87 0.16 13.48 16 18 O -0.48 -20.21 14.40 23.09 0.33 -19.88 16 19 C -0.22 -5.94 6.86 36.45 0.25 -5.69 16 20 N 0.06 1.85 4.45 -46.28 -0.21 1.65 16 21 O -0.14 -3.81 18.43 18.89 0.35 -3.46 16 22 O -0.20 -7.71 17.51 25.41 0.44 -7.26 16 23 C 0.29 4.73 9.79 83.39 0.82 5.54 16 24 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.15 1.25 7.99 -2.39 -0.02 1.23 16 28 H 0.15 1.25 7.99 -2.39 -0.02 1.23 16 29 H 0.25 2.19 7.52 -2.91 -0.02 2.17 16 30 H 0.25 2.21 7.52 -2.91 -0.02 2.18 16 Total: -1.00 -72.23 290.71 7.28 -64.95 By element: Atomic # 1 Polarization: -7.29 SS G_CDS: 1.21 Total: -6.09 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 3.62 Total: -4.27 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -1.50 Total: -50.85 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: 1.92 Total: -41.33 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Total: -72.23 7.28 -64.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340607419.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.375 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds