Wall clock time and date at job start Tue Mar 31 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46861 * 181.53560 * 3 2 1 5 5 C 1.36801 * 120.00312 * 98.43781 * 4 3 2 6 6 H 1.08006 * 119.99945 * 152.84010 * 5 4 3 7 7 C 1.39089 * 120.00351 * 332.84708 * 5 4 3 8 8 N 1.31336 * 119.99374 * 3.07011 * 7 5 4 9 9 Si 1.86796 * 120.00211 * 183.07252 * 7 5 4 10 10 H 1.48499 * 109.47287 * 59.99816 * 9 7 5 11 11 H 1.48502 * 109.46969 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47100 * 299.99569 * 9 7 5 13 13 C 1.34783 * 119.99273 * 278.44227 * 4 3 2 14 14 O 1.21584 * 119.99479 * 177.39334 * 13 4 3 15 15 C 1.47839 * 120.00471 * 357.66644 * 13 4 3 16 16 N 1.32896 * 119.75340 * 4.70428 * 15 13 4 17 17 C 1.31461 * 121.68928 * 179.75070 * 16 15 13 18 18 C 1.38624 * 120.99830 * 0.52671 * 17 16 15 19 19 C 1.38625 * 119.39333 * 359.74260 * 18 17 16 20 20 Cl 1.73593 * 120.77439 * 179.97438 * 19 18 17 21 21 C 1.39070 * 118.44905 * 0.02562 * 19 18 17 22 22 F 1.35101 * 120.50826 * 180.02562 * 21 19 18 23 23 H 1.09000 * 109.47363 * 61.53273 * 3 2 1 24 24 H 1.09001 * 109.46896 * 301.52937 * 3 2 1 25 25 H 0.97004 * 119.99412 * 180.02562 * 8 7 5 26 26 H 1.07995 * 119.50519 * 180.29058 * 17 16 15 27 27 H 1.07994 * 120.30144 * 179.71661 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3817 0.0370 5 6 3.4873 1.9372 1.2242 6 1 4.2225 2.7284 1.2337 7 6 2.9389 1.4832 2.4191 8 7 2.0904 0.4807 2.4130 9 14 3.4091 2.2992 4.0322 10 1 3.0341 3.7354 3.9883 11 1 2.6923 1.6349 5.1503 12 1 4.8743 2.1763 4.2405 13 6 3.1583 2.1047 -1.0987 14 8 3.5180 3.2656 -1.0611 15 6 2.7840 1.4883 -2.3892 16 7 2.2976 0.2517 -2.4130 17 6 1.9481 -0.3314 -3.5382 18 6 2.0845 0.3219 -4.7532 19 6 2.5925 1.6114 -4.7791 20 17 2.7791 2.4626 -6.2805 21 6 2.9500 2.2070 -3.5743 22 9 3.4487 3.4623 -3.5511 23 1 2.9716 -0.4890 -0.9034 24 1 2.9715 -0.5366 0.8760 25 1 1.7077 0.1643 3.2462 26 1 1.5523 -1.3359 -3.5160 27 1 1.7981 -0.1696 -5.6712 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343129165.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:17 Heat of formation + Delta-G solvation = 14.138311 kcal Electronic energy + Delta-G solvation = -19687.960630 eV Core-core repulsion = 16195.230169 eV Total energy + Delta-G solvation = -3492.730461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.62812 -40.29057 -38.34941 -36.83310 -35.76491 -34.33094 -32.59451 -31.61541 -30.84064 -27.44268 -25.75454 -23.90874 -23.35513 -20.37925 -17.94311 -17.72210 -17.46491 -16.88706 -16.33728 -15.66825 -15.54450 -14.79485 -14.37494 -14.18504 -13.74650 -13.52786 -13.26019 -13.11177 -12.69178 -12.58218 -12.28727 -11.88755 -11.59028 -11.34588 -11.21132 -11.18515 -10.61591 -10.55615 -10.51532 -9.57838 -9.41540 -9.26103 -8.87138 -8.74683 -8.11921 -6.63426 -4.20502 0.60353 0.87279 1.73111 3.00410 3.12413 3.15433 3.24310 3.62983 3.91325 3.97262 4.05546 4.30703 4.34344 4.55379 4.67454 4.84411 4.98555 5.30248 5.48969 5.55680 5.67951 5.72518 6.33782 6.64264 6.79917 7.24665 7.67441 7.79344 8.14541 8.80625 8.89735 8.97448 9.57155 10.33939 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.005708 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.964529 B = 4904.483254 C = 5687.464397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.273 3.727 3 C 0.206 3.794 4 N -0.402 5.402 5 C -0.297 4.297 6 H 0.111 0.889 7 C 0.036 3.964 8 N -0.865 5.865 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.477 3.523 14 O -0.561 6.561 15 C 0.094 3.906 16 N -0.436 5.436 17 C 0.101 3.899 18 C -0.143 4.143 19 C -0.039 4.039 20 Cl -0.040 7.040 21 C 0.101 3.899 22 F -0.096 7.096 23 H 0.116 0.884 24 H 0.132 0.868 25 H 0.279 0.721 26 H 0.173 0.827 27 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 -4.903 -11.361 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.044 4.044 3 C 0.080 3.920 4 N -0.119 5.119 5 C -0.425 4.425 6 H 0.128 0.872 7 C -0.170 4.170 8 N -0.503 5.503 9 Si 0.766 3.234 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.266 3.734 14 O -0.443 6.443 15 C -0.046 4.046 16 N -0.148 5.148 17 C -0.058 4.058 18 C -0.164 4.164 19 C -0.074 4.074 20 Cl -0.011 7.011 21 C 0.077 3.923 22 F -0.074 7.074 23 H 0.133 0.867 24 H 0.150 0.850 25 H 0.090 0.910 26 H 0.190 0.810 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.897 -4.732 -10.475 11.530 hybrid contribution 0.545 0.943 -0.179 1.104 sum 1.443 -3.790 -10.654 11.400 Atomic orbital electron populations 1.80870 1.13738 1.08882 1.14126 1.29032 0.95039 0.91980 0.88360 1.19514 0.81903 0.85553 1.05056 1.43507 1.51918 1.10046 1.06387 1.19877 1.21691 1.19423 0.81480 0.87152 1.25584 0.94801 0.96020 1.00616 1.69763 1.27466 1.23702 1.29357 0.85757 0.78876 0.79600 0.79213 1.19425 1.20615 1.19285 1.17354 0.87417 0.86121 0.82522 1.90727 1.52974 1.15493 1.85148 1.22066 0.98036 0.90217 0.94245 1.68425 1.09255 1.08294 1.28874 1.23031 0.95543 1.00598 0.86665 1.22077 1.00608 0.92568 1.01195 1.21393 1.03996 0.95021 0.87032 1.98391 1.95970 1.76946 1.29793 1.18348 0.99198 0.82434 0.92309 1.91627 1.83640 1.35274 1.96841 0.86713 0.85034 0.90956 0.80970 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.96 18.54 42.15 0.78 -11.18 15 2 C 0.27 6.19 12.26 -20.76 -0.25 5.94 15 3 C 0.21 4.28 4.74 -6.83 -0.03 4.25 15 4 N -0.40 -9.62 2.61 -119.01 -0.31 -9.93 15 5 C -0.30 -7.48 9.19 -15.02 -0.14 -7.62 15 6 H 0.11 2.85 7.49 -52.48 -0.39 2.46 15 7 C 0.04 0.86 5.33 -17.45 -0.09 0.76 15 8 N -0.87 -20.95 8.92 55.50 0.49 -20.46 15 9 Si 0.94 19.19 29.55 -169.99 -5.02 14.16 15 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 13 C 0.48 11.48 7.51 -12.33 -0.09 11.39 15 14 O -0.56 -15.16 15.09 5.29 0.08 -15.08 15 15 C 0.09 1.86 6.61 -82.98 -0.55 1.31 15 16 N -0.44 -7.36 4.89 -9.79 -0.05 -7.41 15 17 C 0.10 1.25 11.18 -17.57 -0.20 1.06 15 18 C -0.14 -1.63 9.93 -39.30 -0.39 -2.02 15 19 C -0.04 -0.56 6.37 -39.13 -0.25 -0.81 15 20 Cl -0.04 -0.50 28.75 -51.86 -1.49 -1.99 15 21 C 0.10 1.84 7.29 -38.77 -0.28 1.56 15 22 F -0.10 -1.93 15.22 2.25 0.03 -1.90 15 23 H 0.12 2.05 5.33 -51.98 -0.28 1.77 15 24 H 0.13 2.78 6.19 -51.93 -0.32 2.46 15 25 H 0.28 6.54 8.31 -40.82 -0.34 6.20 15 26 H 0.17 1.51 8.06 -52.49 -0.42 1.08 15 27 H 0.15 1.17 8.06 -52.49 -0.42 0.75 15 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -29.95 268.73 -4.68 -34.63 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -0.97 Total: -0.72 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: -2.28 Total: 15.82 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.92 Total: -48.98 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.03 Total: -1.90 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.49 Total: -1.99 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.95 -4.68 -34.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343129165.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.770 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds