Wall clock time and date at job start Tue Mar 31 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46861 * 181.53560 * 3 2 1 5 5 C 1.36801 * 120.00312 * 98.43781 * 4 3 2 6 6 H 1.08006 * 119.99945 * 152.84010 * 5 4 3 7 7 C 1.39089 * 120.00351 * 332.84708 * 5 4 3 8 8 N 1.31336 * 119.99374 * 3.07011 * 7 5 4 9 9 Si 1.86796 * 120.00211 * 183.07252 * 7 5 4 10 10 H 1.48499 * 109.47287 * 59.99816 * 9 7 5 11 11 H 1.48502 * 109.46969 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47100 * 299.99569 * 9 7 5 13 13 C 1.34783 * 119.99273 * 278.44227 * 4 3 2 14 14 O 1.21584 * 119.99479 * 177.39334 * 13 4 3 15 15 C 1.47839 * 120.00471 * 357.66644 * 13 4 3 16 16 N 1.32896 * 119.75340 * 4.70428 * 15 13 4 17 17 C 1.31461 * 121.68928 * 179.75070 * 16 15 13 18 18 C 1.38624 * 120.99830 * 0.52671 * 17 16 15 19 19 C 1.38625 * 119.39333 * 359.74260 * 18 17 16 20 20 Cl 1.73593 * 120.77439 * 179.97438 * 19 18 17 21 21 C 1.39070 * 118.44905 * 0.02562 * 19 18 17 22 22 F 1.35101 * 120.50826 * 180.02562 * 21 19 18 23 23 H 1.09000 * 109.47363 * 61.53273 * 3 2 1 24 24 H 1.09001 * 109.46896 * 301.52937 * 3 2 1 25 25 H 0.97004 * 119.99412 * 180.02562 * 8 7 5 26 26 H 1.07995 * 119.50519 * 180.29058 * 17 16 15 27 27 H 1.07994 * 120.30144 * 179.71661 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3817 0.0370 5 6 3.4873 1.9372 1.2242 6 1 4.2225 2.7284 1.2337 7 6 2.9389 1.4832 2.4191 8 7 2.0904 0.4807 2.4130 9 14 3.4091 2.2992 4.0322 10 1 3.0341 3.7354 3.9883 11 1 2.6923 1.6349 5.1503 12 1 4.8743 2.1763 4.2405 13 6 3.1583 2.1047 -1.0987 14 8 3.5180 3.2656 -1.0611 15 6 2.7840 1.4883 -2.3892 16 7 2.2976 0.2517 -2.4130 17 6 1.9481 -0.3314 -3.5382 18 6 2.0845 0.3219 -4.7532 19 6 2.5925 1.6114 -4.7791 20 17 2.7791 2.4626 -6.2805 21 6 2.9500 2.2070 -3.5743 22 9 3.4487 3.4623 -3.5511 23 1 2.9716 -0.4890 -0.9034 24 1 2.9715 -0.5366 0.8760 25 1 1.7077 0.1643 3.2462 26 1 1.5523 -1.3359 -3.5160 27 1 1.7981 -0.1696 -5.6712 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343129165.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:16 Heat of formation + Delta-G solvation = -4.345925 kcal Electronic energy + Delta-G solvation = -19688.762167 eV Core-core repulsion = 16195.230169 eV Total energy + Delta-G solvation = -3493.531998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.06876 -41.67996 -39.97198 -37.92927 -37.60679 -36.17189 -34.12989 -33.11004 -32.14763 -29.17848 -27.40443 -25.36647 -24.60246 -21.96680 -19.75004 -19.18088 -18.79832 -18.28206 -17.94884 -17.16770 -17.08465 -16.37140 -15.93164 -15.50671 -15.44383 -14.93165 -14.81811 -14.59313 -14.19652 -13.90481 -13.69505 -13.47263 -13.35662 -13.14131 -12.88664 -12.47474 -12.27070 -12.14638 -12.13420 -11.17266 -10.98940 -10.64926 -10.40061 -10.20305 -9.90960 -8.42694 -6.12466 -0.65062 -0.31797 0.62125 1.40138 1.44502 1.54133 1.75287 1.97740 2.26624 2.35446 2.55396 2.65536 2.92171 3.03334 3.28777 3.45291 3.64588 3.80864 4.12323 4.25016 4.56717 4.61460 4.91878 5.07506 5.34313 5.39168 5.94573 6.28615 6.53265 6.96820 7.10305 7.18311 7.75374 8.52169 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.005708 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.964529 B = 4904.483254 C = 5687.464397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.286 3.714 3 C 0.214 3.786 4 N -0.417 5.417 5 C -0.336 4.336 6 H 0.089 0.911 7 C 0.009 3.991 8 N -0.882 5.882 9 Si 0.996 3.004 10 H -0.283 1.283 11 H -0.272 1.272 12 H -0.256 1.256 13 C 0.471 3.529 14 O -0.605 6.605 15 C 0.065 3.935 16 N -0.451 5.451 17 C 0.110 3.890 18 C -0.100 4.100 19 C -0.040 4.040 20 Cl -0.021 7.021 21 C 0.080 3.920 22 F -0.118 7.118 23 H 0.149 0.851 24 H 0.127 0.873 25 H 0.280 0.720 26 H 0.223 0.777 27 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 -7.060 -13.622 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.031 4.031 3 C 0.089 3.911 4 N -0.134 5.134 5 C -0.463 4.463 6 H 0.107 0.893 7 C -0.195 4.195 8 N -0.520 5.520 9 Si 0.819 3.181 10 H -0.209 1.209 11 H -0.197 1.197 12 H -0.180 1.180 13 C 0.260 3.740 14 O -0.491 6.491 15 C -0.072 4.072 16 N -0.163 5.163 17 C -0.050 4.050 18 C -0.121 4.121 19 C -0.075 4.075 20 Cl 0.009 6.991 21 C 0.056 3.944 22 F -0.096 7.096 23 H 0.165 0.835 24 H 0.145 0.855 25 H 0.091 0.909 26 H 0.239 0.761 27 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.244 -6.911 -12.739 14.495 hybrid contribution 0.692 1.550 0.172 1.706 sum 0.935 -5.362 -12.567 13.695 Atomic orbital electron populations 1.80858 1.14530 1.09854 1.15295 1.29360 0.95315 0.91030 0.87379 1.19671 0.80783 0.84264 1.06401 1.43617 1.52521 1.11159 1.06088 1.19797 1.23127 1.20504 0.82913 0.89338 1.26178 0.94497 0.96185 1.02601 1.69830 1.28054 1.24258 1.29820 0.84943 0.79316 0.77726 0.76145 1.20926 1.19655 1.18008 1.18070 0.85926 0.85840 0.84142 1.90665 1.54386 1.17594 1.86462 1.21330 1.01208 0.92026 0.92602 1.68220 1.09440 1.07132 1.31517 1.23916 0.93465 1.02005 0.85571 1.22730 0.95889 0.90540 1.02911 1.21561 1.03470 0.95964 0.86498 1.98407 1.95849 1.76943 1.27945 1.18615 1.00339 0.81915 0.93574 1.91565 1.84257 1.36760 1.97027 0.83480 0.85514 0.90945 0.76101 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.00 18.54 20.01 0.37 -24.63 15 2 C 0.29 12.84 12.26 89.44 1.10 13.94 15 3 C 0.21 8.92 4.74 84.57 0.40 9.33 15 4 N -0.42 -20.67 2.61 -648.71 -1.69 -22.36 15 5 C -0.34 -17.75 9.19 84.12 0.77 -16.98 15 6 H 0.09 4.91 7.49 -2.91 -0.02 4.89 15 7 C 0.01 0.45 5.33 84.97 0.45 0.90 15 8 N -0.88 -43.28 8.92 21.69 0.19 -43.09 15 9 Si 1.00 40.21 29.55 68.60 2.03 42.23 15 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 11 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 12 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 13 C 0.47 23.54 7.51 86.78 0.65 24.19 15 14 O -0.61 -34.69 15.09 -3.98 -0.06 -34.75 15 15 C 0.07 2.57 6.61 41.85 0.28 2.85 15 16 N -0.45 -14.15 4.89 -184.89 -0.90 -15.05 15 17 C 0.11 2.18 11.18 84.84 0.95 3.13 15 18 C -0.10 -1.70 9.93 22.45 0.22 -1.48 15 19 C -0.04 -1.00 6.37 22.56 0.14 -0.85 15 20 Cl -0.02 -0.45 28.75 -2.72 -0.08 -0.53 15 21 C 0.08 2.85 7.29 22.80 0.17 3.02 15 22 F -0.12 -4.88 15.22 44.97 0.68 -4.20 15 23 H 0.15 5.07 5.33 -2.50 -0.01 5.06 15 24 H 0.13 5.41 6.19 -2.39 -0.01 5.39 15 25 H 0.28 13.17 8.31 -92.70 -0.77 12.40 15 26 H 0.22 2.27 8.06 -2.91 -0.02 2.24 15 27 H 0.21 1.46 8.06 -2.91 -0.02 1.43 15 Total: -1.00 -69.96 268.73 6.93 -63.03 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.25 Total: 1.31 kcal Atomic # 6 Polarization: 32.91 SS G_CDS: 5.13 Total: 38.04 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -2.03 Total: -105.13 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.06 Total: -34.75 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.68 Total: -4.20 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -69.96 6.93 -63.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343129165.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.686 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds