Wall clock time and date at job start Tue Mar 31 2020 05:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36635 * 125.45492 * 51.60711 * 3 2 1 5 5 C 1.37618 * 113.26559 * 179.97438 * 4 3 2 6 6 C 1.33717 * 115.09620 * 359.97438 * 5 4 3 7 7 C 1.50696 * 124.50749 * 179.97438 * 6 5 4 8 8 O 1.45203 * 109.46971 * 89.97969 * 7 6 5 9 9 C 1.34232 * 117.00035 * 179.97438 * 8 7 6 10 10 O 1.20831 * 119.99854 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00006 * 180.02562 * 9 8 7 12 12 S 1.81006 * 109.46946 * 180.02562 * 11 9 8 13 13 C 1.76208 * 99.99911 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99705 * 0.02562 * 13 12 11 15 15 C 1.38791 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31638 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00202 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47125 * 89.99896 * 17 15 13 19 19 H 1.48497 * 109.47415 * 210.00316 * 17 15 13 20 20 H 1.48499 * 109.47100 * 330.00323 * 17 15 13 21 21 S 1.70609 * 110.97575 * 0.02562 * 6 5 4 22 22 H 1.07992 * 123.36750 * 359.73244 * 4 3 2 23 23 H 1.08000 * 122.44759 * 180.02562 * 5 4 3 24 24 H 1.09001 * 109.46903 * 209.97416 * 7 6 5 25 25 H 1.08998 * 109.47501 * 329.97628 * 7 6 5 26 26 H 1.09003 * 109.47370 * 300.00109 * 11 9 8 27 27 H 1.09000 * 109.47375 * 60.00143 * 11 9 8 28 28 H 0.96993 * 119.99740 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3609 -0.6902 -0.8723 5 6 4.7060 -0.5087 -0.6449 6 6 5.0043 0.3017 0.3760 7 6 6.4053 0.6470 0.8107 8 8 6.8551 1.8299 0.0989 9 6 8.0921 2.2729 0.3737 10 8 8.7764 1.6912 1.1820 11 6 8.6272 3.4957 -0.3258 12 16 10.3077 3.8357 0.2544 13 6 10.6761 5.2710 -0.6991 14 1 9.9415 5.6670 -1.3846 15 6 11.9098 5.8931 -0.5683 16 7 12.8049 5.4107 0.2677 17 14 12.3001 7.4152 -1.5785 18 1 11.8875 8.6275 -0.8268 19 1 13.7598 7.4712 -1.8455 20 1 11.5633 7.3568 -2.8665 21 16 3.5877 0.8914 1.1217 22 1 2.9711 -1.3191 -1.6590 23 1 5.4650 -0.9853 -1.2476 24 1 6.4151 0.8425 1.8830 25 1 7.0710 -0.1867 0.5872 26 1 8.6430 3.3212 -1.4016 27 1 7.9867 4.3498 -0.1056 28 1 13.6670 5.8458 0.3593 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346542539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:48 Heat of formation + Delta-G solvation = -24.166677 kcal Electronic energy + Delta-G solvation = -15722.352839 eV Core-core repulsion = 12763.925480 eV Total energy + Delta-G solvation = -2958.427359 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22693 -38.68080 -36.89196 -36.17956 -32.52419 -31.93658 -29.75564 -27.36563 -25.59406 -23.99793 -21.36586 -21.18436 -18.83921 -17.99635 -17.26865 -17.04606 -16.14607 -15.92743 -14.89358 -14.87886 -14.61656 -14.17818 -13.98875 -13.82820 -13.34538 -13.06753 -13.00466 -12.70045 -12.49642 -12.12883 -12.04030 -11.35400 -11.14119 -11.10130 -10.85744 -10.67273 -10.20608 -9.95111 -9.23510 -9.15218 -9.02915 -8.41910 -6.65526 -6.31347 -4.04639 -0.08890 0.70507 1.37645 1.82709 2.49315 2.52620 2.65282 2.90397 3.18209 3.21968 3.26336 3.46333 3.49475 4.10744 4.23083 4.64871 4.87617 4.98643 5.04282 5.05099 5.20982 5.44834 5.48799 5.62962 5.70715 5.84051 6.01562 6.48915 7.01437 7.51713 8.01757 8.26439 9.14442 10.76167 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.040173 B = 0.002778 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.814565 B =10078.229844 C =10424.474774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.283 3.717 3 C -0.171 4.171 4 C -0.059 4.059 5 C -0.122 4.122 6 C -0.202 4.202 7 C 0.133 3.867 8 O -0.355 6.355 9 C 0.481 3.519 10 O -0.485 6.485 11 C -0.129 4.129 12 S -0.058 6.058 13 C -0.537 4.537 14 H 0.077 0.923 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.921 3.079 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.271 1.271 21 S 0.279 5.721 22 H 0.156 0.844 23 H 0.154 0.846 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 -11.051 -0.812 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.032 4.032 3 C -0.292 4.292 4 C -0.095 4.095 5 C -0.153 4.153 6 C -0.323 4.323 7 C 0.057 3.943 8 O -0.274 6.274 9 C 0.322 3.678 10 O -0.370 6.370 11 C -0.277 4.277 12 S 0.169 5.831 13 C -0.685 4.685 14 H 0.095 0.905 15 C -0.134 4.134 16 N -0.502 5.502 17 Si 0.747 3.253 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.196 1.196 21 S 0.548 5.452 22 H 0.174 0.826 23 H 0.172 0.828 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.472 -10.801 1.546 20.599 hybrid contribution 0.323 0.537 -2.730 2.802 sum -17.148 -10.264 -1.184 20.020 Atomic orbital electron populations 1.81317 1.11159 1.08301 1.07594 1.24279 0.90905 0.93918 0.94133 1.20487 0.89370 1.11921 1.07407 1.20722 0.92002 0.98363 0.98428 1.20010 0.96476 1.00721 0.98100 1.23940 1.00021 1.04836 1.03486 1.21166 0.88709 0.87913 0.96492 1.86598 1.33771 1.43315 1.63726 1.23374 0.78489 0.85292 0.80598 1.90687 1.57614 1.56527 1.32188 1.23323 1.05770 0.94825 1.03741 1.85424 1.04110 1.37104 1.56502 1.22841 1.03796 1.13512 1.28359 0.90532 1.24997 0.94985 0.97922 0.95519 1.70007 1.06418 1.39571 1.34235 0.86121 0.77748 0.81452 0.79939 1.20164 1.20682 1.19562 1.83352 0.91941 1.41761 1.28108 0.82641 0.82833 0.89673 0.88622 0.87751 0.87775 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.72 18.54 41.84 0.78 -3.95 15 2 C 0.28 2.69 15.83 -22.47 -0.36 2.33 15 3 C -0.17 -1.32 6.32 -38.24 -0.24 -1.57 15 4 C -0.06 -0.38 10.24 -40.39 -0.41 -0.79 15 5 C -0.12 -0.86 10.00 -41.39 -0.41 -1.28 15 6 C -0.20 -1.73 5.91 -35.90 -0.21 -1.94 15 7 C 0.13 1.41 5.89 36.00 0.21 1.62 15 8 O -0.36 -4.96 10.20 -39.26 -0.40 -5.36 15 9 C 0.48 8.41 7.97 36.00 0.29 8.70 15 10 O -0.49 -9.77 15.61 -18.75 -0.29 -10.06 15 11 C -0.13 -2.46 6.27 36.00 0.23 -2.23 15 12 S -0.06 -1.48 20.58 -107.50 -2.21 -3.69 15 13 C -0.54 -14.65 9.50 30.94 0.29 -14.36 15 14 H 0.08 1.97 7.80 -52.49 -0.41 1.56 15 15 C 0.08 2.07 5.49 -17.43 -0.10 1.97 15 16 N -0.87 -25.21 13.22 55.49 0.73 -24.48 15 17 Si 0.92 20.68 29.55 -169.99 -5.02 15.66 15 18 H -0.28 -6.09 7.11 56.52 0.40 -5.68 15 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 21 S 0.28 2.14 23.01 -107.50 -2.47 -0.33 15 22 H 0.16 0.65 8.06 -52.49 -0.42 0.23 15 23 H 0.15 0.86 8.06 -52.49 -0.42 0.44 15 24 H 0.09 0.86 8.13 -51.93 -0.42 0.44 15 25 H 0.10 0.94 8.13 -51.93 -0.42 0.51 15 26 H 0.10 1.84 8.14 -51.91 -0.42 1.42 15 27 H 0.10 1.84 8.14 -51.92 -0.42 1.42 15 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -32.11 300.24 -7.16 -39.28 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: -2.08 Total: -4.05 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.71 Total: -7.53 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 1.51 Total: -28.43 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.69 Total: -15.42 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -4.69 Total: -4.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.11 -7.16 -39.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346542539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.111 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds