Wall clock time and date at job start Tue Mar 31 2020 05:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36635 * 125.45492 * 51.60711 * 3 2 1 5 5 C 1.37618 * 113.26559 * 179.97438 * 4 3 2 6 6 C 1.33717 * 115.09620 * 359.97438 * 5 4 3 7 7 C 1.50696 * 124.50749 * 179.97438 * 6 5 4 8 8 O 1.45203 * 109.46971 * 89.97969 * 7 6 5 9 9 C 1.34232 * 117.00035 * 179.97438 * 8 7 6 10 10 O 1.20831 * 119.99854 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00006 * 180.02562 * 9 8 7 12 12 S 1.81006 * 109.46946 * 180.02562 * 11 9 8 13 13 C 1.76208 * 99.99911 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99705 * 0.02562 * 13 12 11 15 15 C 1.38791 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31638 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00202 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47125 * 89.99896 * 17 15 13 19 19 H 1.48497 * 109.47415 * 210.00316 * 17 15 13 20 20 H 1.48499 * 109.47100 * 330.00323 * 17 15 13 21 21 S 1.70609 * 110.97575 * 0.02562 * 6 5 4 22 22 H 1.07992 * 123.36750 * 359.73244 * 4 3 2 23 23 H 1.08000 * 122.44759 * 180.02562 * 5 4 3 24 24 H 1.09001 * 109.46903 * 209.97416 * 7 6 5 25 25 H 1.08998 * 109.47501 * 329.97628 * 7 6 5 26 26 H 1.09003 * 109.47370 * 300.00109 * 11 9 8 27 27 H 1.09000 * 109.47375 * 60.00143 * 11 9 8 28 28 H 0.96993 * 119.99740 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3609 -0.6902 -0.8723 5 6 4.7060 -0.5087 -0.6449 6 6 5.0043 0.3017 0.3760 7 6 6.4053 0.6470 0.8107 8 8 6.8551 1.8299 0.0989 9 6 8.0921 2.2729 0.3737 10 8 8.7764 1.6912 1.1820 11 6 8.6272 3.4957 -0.3258 12 16 10.3077 3.8357 0.2544 13 6 10.6761 5.2710 -0.6991 14 1 9.9415 5.6670 -1.3846 15 6 11.9098 5.8931 -0.5683 16 7 12.8049 5.4107 0.2677 17 14 12.3001 7.4152 -1.5785 18 1 11.8875 8.6275 -0.8268 19 1 13.7598 7.4712 -1.8455 20 1 11.5633 7.3568 -2.8665 21 16 3.5877 0.8914 1.1217 22 1 2.9711 -1.3191 -1.6590 23 1 5.4650 -0.9853 -1.2476 24 1 6.4151 0.8425 1.8830 25 1 7.0710 -0.1867 0.5872 26 1 8.6430 3.3212 -1.4016 27 1 7.9867 4.3498 -0.1056 28 1 13.6670 5.8458 0.3593 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346542539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:47 Heat of formation + Delta-G solvation = -42.399202 kcal Electronic energy + Delta-G solvation = -15723.143460 eV Core-core repulsion = 12763.925480 eV Total energy + Delta-G solvation = -2959.217981 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.50486 -39.35141 -37.82923 -37.27931 -34.58719 -32.78673 -31.13249 -28.19230 -27.64138 -24.71349 -22.49426 -21.98968 -19.93382 -19.48327 -18.65611 -17.93242 -17.17321 -17.09802 -16.86780 -16.04900 -15.67825 -15.29748 -15.01198 -14.70483 -14.54965 -14.24981 -13.97731 -13.82128 -13.46639 -13.20707 -13.10311 -12.91643 -12.88016 -12.63352 -11.99808 -11.76956 -11.70474 -11.62819 -11.13791 -10.35078 -9.90771 -9.60747 -8.70411 -8.35517 -6.14562 -0.73634 0.06950 0.76358 0.98544 1.13951 1.32555 1.44938 1.46815 1.57930 1.77782 2.01311 2.22017 2.25962 2.80015 3.00000 3.27685 3.47141 3.89296 3.96881 4.21669 4.28385 4.34756 4.49326 4.51739 4.91087 5.04988 5.22600 5.30274 5.43815 6.20421 6.28936 6.68524 7.06936 8.73613 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.040173 B = 0.002778 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.814565 B =10078.229844 C =10424.474774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.304 3.696 3 C -0.180 4.180 4 C -0.044 4.044 5 C -0.112 4.112 6 C -0.217 4.217 7 C 0.128 3.872 8 O -0.347 6.347 9 C 0.493 3.507 10 O -0.517 6.517 11 C -0.110 4.110 12 S -0.136 6.136 13 C -0.548 4.548 14 H 0.086 0.914 15 C 0.018 3.982 16 N -0.910 5.910 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.258 1.258 21 S 0.282 5.718 22 H 0.183 0.817 23 H 0.173 0.827 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.497 -11.051 -2.349 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.011 4.011 3 C -0.301 4.301 4 C -0.080 4.080 5 C -0.144 4.144 6 C -0.338 4.338 7 C 0.053 3.947 8 O -0.264 6.264 9 C 0.335 3.665 10 O -0.405 6.405 11 C -0.259 4.259 12 S 0.091 5.909 13 C -0.696 4.696 14 H 0.104 0.896 15 C -0.187 4.187 16 N -0.546 5.546 17 Si 0.819 3.181 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.182 1.182 21 S 0.552 5.448 22 H 0.200 0.800 23 H 0.190 0.810 24 H 0.106 0.894 25 H 0.123 0.877 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.544 -10.806 0.012 21.463 hybrid contribution 0.524 0.414 -2.250 2.347 sum -18.020 -10.392 -2.238 20.922 Atomic orbital electron populations 1.81339 1.12398 1.09862 1.09078 1.24419 0.91055 0.92684 0.92901 1.20539 0.88538 1.12834 1.08158 1.21011 0.91412 0.97448 0.98148 1.20272 0.97187 0.99621 0.97297 1.23829 0.99037 1.06174 1.04740 1.21422 0.90062 0.86679 0.96525 1.86553 1.31495 1.44660 1.63724 1.22901 0.79259 0.84557 0.79741 1.90684 1.58795 1.57432 1.33572 1.23109 1.01523 0.96581 1.04642 1.85511 1.09971 1.37564 1.57872 1.23205 1.04321 1.13701 1.28377 0.89582 1.26067 0.94751 1.01294 0.96595 1.70158 1.06987 1.41384 1.36092 0.84972 0.77601 0.77032 0.78524 1.19384 1.20343 1.18201 1.83390 0.91627 1.41714 1.28045 0.80002 0.80995 0.89387 0.87692 0.85876 0.86015 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.12 18.54 19.00 0.35 -9.77 15 2 C 0.30 5.35 15.83 88.33 1.40 6.75 15 3 C -0.18 -2.39 6.32 23.14 0.15 -2.24 15 4 C -0.04 -0.42 10.24 21.75 0.22 -0.20 15 5 C -0.11 -1.22 10.00 21.10 0.21 -1.01 15 6 C -0.22 -3.20 5.91 24.66 0.15 -3.05 15 7 C 0.13 2.48 5.89 71.23 0.42 2.90 15 8 O -0.35 -9.00 10.20 -51.44 -0.52 -9.53 15 9 C 0.49 16.70 7.97 71.23 0.57 17.27 15 10 O -0.52 -20.74 15.61 21.95 0.34 -20.40 15 11 C -0.11 -4.08 6.27 71.23 0.45 -3.64 15 12 S -0.14 -7.07 20.58 -56.49 -1.16 -8.23 15 13 C -0.55 -29.83 9.50 67.95 0.65 -29.18 15 14 H 0.09 4.34 7.80 -2.91 -0.02 4.32 15 15 C 0.02 0.99 5.49 84.85 0.47 1.46 15 16 N -0.91 -53.68 13.22 21.65 0.29 -53.39 15 17 Si 1.00 41.92 29.55 68.60 2.03 43.95 15 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 19 H -0.28 -11.44 7.11 99.48 0.71 -10.73 15 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 21 S 0.28 3.85 23.01 -56.49 -1.30 2.55 15 22 H 0.18 0.78 8.06 -2.91 -0.02 0.75 15 23 H 0.17 1.26 8.06 -2.91 -0.02 1.24 15 24 H 0.09 1.67 8.13 -2.39 -0.02 1.65 15 25 H 0.11 1.86 8.13 -2.39 -0.02 1.84 15 26 H 0.12 4.11 8.14 -2.39 -0.02 4.09 15 27 H 0.12 4.09 8.14 -2.39 -0.02 4.07 15 28 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 Total: -1.00 -69.95 300.24 5.89 -64.05 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 1.20 Total: 1.71 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 4.67 Total: -10.95 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: 0.64 Total: -63.16 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.18 Total: -29.93 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.46 Total: -5.68 kcal Total: -69.95 5.89 -64.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346542539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.655 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds