Wall clock time and date at job start Tue Mar 31 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46886 * 2 1 4 4 C 1.36745 * 119.99827 * 96.63625 * 3 2 1 5 5 H 1.08001 * 120.00147 * 160.19444 * 4 3 2 6 6 C 1.39136 * 120.00141 * 340.20517 * 4 3 2 7 7 N 1.31311 * 119.99614 * 358.12229 * 6 4 3 8 8 Si 1.86790 * 120.00252 * 178.12827 * 6 4 3 9 9 H 1.48501 * 109.47028 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47377 * 119.99726 * 8 6 4 11 11 H 1.48495 * 109.47255 * 239.99670 * 8 6 4 12 12 C 1.34775 * 120.00166 * 276.63446 * 3 2 1 13 13 O 1.21634 * 119.99629 * 185.00933 * 12 3 2 14 14 C 1.47442 * 120.00071 * 5.01184 * 12 3 2 15 15 C 1.38818 * 123.65267 * 297.91618 * 14 12 3 16 16 C 1.33324 * 115.05916 * 180.31392 * 15 14 12 17 17 S 1.70515 * 111.44604 * 359.72640 * 16 15 14 18 18 C 1.38270 * 123.64764 * 117.72362 * 14 12 3 19 19 C 1.46683 * 125.51063 * 359.97438 * 18 14 12 20 20 O 1.21590 * 119.99710 * 353.84177 * 19 18 14 21 21 O 1.34874 * 119.99920 * 173.57218 * 19 18 14 22 22 C 1.45204 * 116.99995 * 180.02562 * 21 19 18 23 23 H 1.08999 * 109.46714 * 59.99580 * 1 2 3 24 24 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46969 * 299.99808 * 1 2 3 26 26 H 1.09002 * 109.46969 * 240.00192 * 2 1 3 27 27 H 1.08999 * 109.46714 * 120.00420 * 2 1 3 28 28 H 0.97001 * 119.99728 * 180.02562 * 7 6 4 29 29 H 1.07995 * 122.46771 * 0.02562 * 15 14 12 30 30 H 1.08003 * 124.27624 * 179.74530 * 16 15 14 31 31 H 1.09000 * 109.47008 * 299.99829 * 22 21 19 32 32 H 1.08998 * 109.47218 * 59.98941 * 22 21 19 33 33 H 1.08999 * 109.47552 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3753 1.9802 1.1763 5 1 3.0191 2.8473 1.1672 6 6 1.9092 1.4725 2.3850 7 7 1.0970 0.4407 2.3941 8 14 2.4386 2.2586 3.9946 9 1 3.3501 3.3967 3.7133 10 1 1.2415 2.7508 4.7225 11 1 3.1457 1.2530 4.8276 12 6 2.1158 2.0615 -1.1593 13 8 2.6060 3.1747 -1.1719 14 6 1.6282 1.4565 -2.4124 15 6 2.1474 0.2895 -2.9561 16 6 1.5825 -0.1011 -4.0988 17 16 0.3437 0.9676 -4.5792 18 6 0.6018 1.9881 -3.1712 19 6 -0.1466 3.2095 -2.8556 20 8 0.0418 3.7822 -1.7997 21 8 -1.0399 3.7002 -3.7389 22 6 -1.7437 4.9125 -3.3603 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.7718 0.0869 3.2368 29 1 2.9527 -0.2589 -2.4902 30 1 1.8726 -0.9832 -4.6504 31 1 -2.3057 4.7351 -2.4434 32 1 -1.0238 5.7142 -3.1956 33 1 -2.4296 5.1987 -4.1577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348570461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:43 Heat of formation + Delta-G solvation = -58.418505 kcal Electronic energy + Delta-G solvation = -20769.642038 eV Core-core repulsion = 17502.809632 eV Total energy + Delta-G solvation = -3266.832406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01655 -38.94557 -36.63685 -35.84932 -34.96934 -31.66221 -30.09986 -29.37242 -27.67000 -25.93901 -24.13954 -22.31503 -21.68830 -20.56651 -18.59436 -18.08705 -16.89121 -16.50455 -16.01871 -15.66587 -15.37711 -14.77304 -14.21568 -13.97002 -13.46153 -13.18233 -13.13893 -12.79125 -12.54208 -12.32571 -12.13707 -11.83763 -11.60629 -11.18316 -11.08442 -10.89012 -10.70039 -10.51450 -10.30373 -10.14825 -10.06641 -9.91599 -8.88631 -8.66755 -8.50343 -8.19794 -7.62699 -6.24802 -3.82675 0.61365 1.66110 2.06700 2.47837 2.92224 3.14889 3.26560 3.26983 3.34453 3.97753 4.16951 4.85311 5.05776 5.19580 5.25955 5.30748 5.35914 5.51407 5.67463 5.68688 6.06150 6.28883 6.33469 6.44187 6.64462 6.69866 6.76419 6.85828 7.37781 7.54607 7.79149 8.12818 8.15435 8.55225 9.18827 9.42224 9.99646 10.68794 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.006673 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.944123 B = 4195.139958 C = 4906.745626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.117 3.883 3 N -0.427 5.427 4 C -0.285 4.285 5 H 0.103 0.897 6 C 0.024 3.976 7 N -0.875 5.875 8 Si 0.932 3.068 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.498 3.502 13 O -0.567 6.567 14 C -0.010 4.010 15 C -0.129 4.129 16 C -0.234 4.234 17 S 0.217 5.783 18 C -0.236 4.236 19 C 0.525 3.475 20 O -0.454 6.454 21 O -0.366 6.366 22 C 0.040 3.960 23 H 0.017 0.983 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.032 0.968 27 H 0.114 0.886 28 H 0.266 0.734 29 H 0.150 0.850 30 H 0.171 0.829 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 -2.991 -11.872 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.007 4.007 3 N -0.145 5.145 4 C -0.414 4.414 5 H 0.121 0.879 6 C -0.178 4.178 7 N -0.516 5.516 8 Si 0.758 3.242 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.284 3.716 13 O -0.450 6.450 14 C -0.028 4.028 15 C -0.160 4.160 16 C -0.371 4.371 17 S 0.486 5.514 18 C -0.355 4.355 19 C 0.366 3.634 20 O -0.339 6.339 21 O -0.284 6.284 22 C -0.054 4.054 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.168 0.832 30 H 0.188 0.812 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.281 -2.322 -12.618 13.874 hybrid contribution 0.981 0.127 2.036 2.263 sum -4.300 -2.195 -10.582 11.631 Atomic orbital electron populations 1.22116 0.96862 0.99450 1.01516 1.21691 0.94628 0.83339 1.01004 1.43617 1.54608 1.11173 1.05088 1.19829 1.26756 1.12723 0.82047 0.87944 1.25385 0.95844 0.96788 0.99753 1.69999 1.31612 1.23342 1.26623 0.85760 0.78455 0.79083 0.80853 1.19222 1.20697 1.20730 1.17225 0.85857 0.85734 0.82810 1.90647 1.48961 1.19730 1.85682 1.19944 0.92881 0.93415 0.96602 1.20058 1.03195 0.96527 0.96224 1.25139 1.03552 1.06237 1.02177 1.82794 1.32416 1.14811 1.21427 1.23507 1.06130 1.02082 1.03785 1.19655 0.77964 0.83475 0.82301 1.91045 1.61908 1.57363 1.23594 1.86522 1.52118 1.42591 1.47149 1.23200 0.96044 0.84334 1.01786 0.96401 0.94600 0.89260 0.94988 0.86811 0.92332 0.83238 0.81188 0.91898 0.91848 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.55 37.16 0.35 -2.82 16 2 C 0.12 2.70 5.04 -4.04 -0.02 2.67 16 3 N -0.43 -11.37 2.63 -116.03 -0.31 -11.68 16 4 C -0.29 -8.09 9.40 -15.03 -0.14 -8.23 16 5 H 0.10 3.06 7.30 -52.49 -0.38 2.68 16 6 C 0.02 0.63 5.30 -17.44 -0.09 0.54 16 7 N -0.87 -22.52 7.83 55.51 0.43 -22.08 16 8 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.50 13.19 5.97 -12.51 -0.07 13.12 16 13 O -0.57 -17.09 15.80 -11.43 -0.18 -17.27 16 14 C -0.01 -0.20 4.01 -105.92 -0.42 -0.63 16 15 C -0.13 -2.16 8.15 -41.08 -0.33 -2.50 16 16 C -0.23 -3.09 10.87 29.02 0.32 -2.77 16 17 S 0.22 3.00 22.92 -107.50 -2.46 0.54 16 18 C -0.24 -4.63 6.46 -36.16 -0.23 -4.87 16 19 C 0.52 10.99 7.92 34.14 0.27 11.26 16 20 O -0.45 -11.45 14.51 -25.23 -0.37 -11.81 16 21 O -0.37 -6.14 10.44 -40.97 -0.43 -6.57 16 22 C 0.04 0.53 10.57 101.05 1.07 1.59 16 23 H 0.02 0.39 7.24 -51.93 -0.38 0.01 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.09 2.27 6.22 -51.93 -0.32 1.95 16 26 H 0.03 0.64 5.04 -51.93 -0.26 0.38 16 27 H 0.11 2.79 5.88 -51.93 -0.31 2.49 16 28 H 0.27 6.47 8.31 -40.82 -0.34 6.14 16 29 H 0.15 2.32 7.36 -52.49 -0.39 1.94 16 30 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 296.17 15.07 4.46 4.46 Total: -1.00 -33.68 296.17 -6.46 -40.15 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -3.28 Total: 0.95 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 0.69 Total: 7.37 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.13 Total: -33.76 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.97 Total: -35.65 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.46 Total: 0.54 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.68 -6.46 -40.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348570461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.273 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds