Wall clock time and date at job start Tue Mar 31 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46886 * 2 1 4 4 C 1.36745 * 119.99827 * 96.63625 * 3 2 1 5 5 H 1.08001 * 120.00147 * 160.19444 * 4 3 2 6 6 C 1.39136 * 120.00141 * 340.20517 * 4 3 2 7 7 N 1.31311 * 119.99614 * 358.12229 * 6 4 3 8 8 Si 1.86790 * 120.00252 * 178.12827 * 6 4 3 9 9 H 1.48501 * 109.47028 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47377 * 119.99726 * 8 6 4 11 11 H 1.48495 * 109.47255 * 239.99670 * 8 6 4 12 12 C 1.34775 * 120.00166 * 276.63446 * 3 2 1 13 13 O 1.21634 * 119.99629 * 185.00933 * 12 3 2 14 14 C 1.47442 * 120.00071 * 5.01184 * 12 3 2 15 15 C 1.38818 * 123.65267 * 297.91618 * 14 12 3 16 16 C 1.33324 * 115.05916 * 180.31392 * 15 14 12 17 17 S 1.70515 * 111.44604 * 359.72640 * 16 15 14 18 18 C 1.38270 * 123.64764 * 117.72362 * 14 12 3 19 19 C 1.46683 * 125.51063 * 359.97438 * 18 14 12 20 20 O 1.21590 * 119.99710 * 353.84177 * 19 18 14 21 21 O 1.34874 * 119.99920 * 173.57218 * 19 18 14 22 22 C 1.45204 * 116.99995 * 180.02562 * 21 19 18 23 23 H 1.08999 * 109.46714 * 59.99580 * 1 2 3 24 24 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46969 * 299.99808 * 1 2 3 26 26 H 1.09002 * 109.46969 * 240.00192 * 2 1 3 27 27 H 1.08999 * 109.46714 * 120.00420 * 2 1 3 28 28 H 0.97001 * 119.99728 * 180.02562 * 7 6 4 29 29 H 1.07995 * 122.46771 * 0.02562 * 15 14 12 30 30 H 1.08003 * 124.27624 * 179.74530 * 16 15 14 31 31 H 1.09000 * 109.47008 * 299.99829 * 22 21 19 32 32 H 1.08998 * 109.47218 * 59.98941 * 22 21 19 33 33 H 1.08999 * 109.47552 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3753 1.9802 1.1763 5 1 3.0191 2.8473 1.1672 6 6 1.9092 1.4725 2.3850 7 7 1.0970 0.4407 2.3941 8 14 2.4386 2.2586 3.9946 9 1 3.3501 3.3967 3.7133 10 1 1.2415 2.7508 4.7225 11 1 3.1457 1.2530 4.8276 12 6 2.1158 2.0615 -1.1593 13 8 2.6060 3.1747 -1.1719 14 6 1.6282 1.4565 -2.4124 15 6 2.1474 0.2895 -2.9561 16 6 1.5825 -0.1011 -4.0988 17 16 0.3437 0.9676 -4.5792 18 6 0.6018 1.9881 -3.1712 19 6 -0.1466 3.2095 -2.8556 20 8 0.0418 3.7822 -1.7997 21 8 -1.0399 3.7002 -3.7389 22 6 -1.7437 4.9125 -3.3603 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.7718 0.0869 3.2368 29 1 2.9527 -0.2589 -2.4902 30 1 1.8726 -0.9832 -4.6504 31 1 -2.3057 4.7351 -2.4434 32 1 -1.0238 5.7142 -3.1956 33 1 -2.4296 5.1987 -4.1577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348570461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:42 Heat of formation + Delta-G solvation = -80.675475 kcal Electronic energy + Delta-G solvation = -20770.607173 eV Core-core repulsion = 17502.809632 eV Total energy + Delta-G solvation = -3267.797541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57405 -40.65792 -38.18464 -37.38332 -36.99127 -33.68036 -31.47122 -31.26241 -28.97716 -27.59898 -25.83163 -24.10796 -23.12826 -22.20682 -20.01997 -19.73078 -18.84161 -18.13802 -17.46102 -17.23870 -17.02737 -16.25270 -16.00727 -15.63210 -15.22675 -14.70336 -14.57616 -14.44663 -14.21851 -13.77725 -13.68570 -13.40884 -13.07417 -12.98203 -12.87529 -12.66081 -12.22964 -12.13182 -12.03418 -11.87852 -11.76338 -11.69481 -10.85620 -10.51645 -9.97713 -9.68461 -9.40367 -8.25208 -5.94185 -0.76487 0.38470 0.85614 1.11593 1.34606 1.38955 1.52589 1.56298 1.70351 2.12371 2.29525 3.01043 3.17029 3.86595 3.89149 4.14062 4.26127 4.28334 4.33966 4.48332 4.62216 4.78240 4.86171 4.93200 5.05291 5.09278 5.13158 5.26221 5.37665 5.54226 5.87288 6.09203 6.53983 6.65002 7.15046 7.44008 8.01265 8.66145 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.006673 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.944123 B = 4195.139958 C = 4906.745626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.120 3.880 3 N -0.440 5.440 4 C -0.336 4.336 5 H 0.067 0.933 6 C -0.001 4.001 7 N -0.876 5.876 8 Si 0.991 3.009 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.259 1.259 12 C 0.488 3.512 13 O -0.625 6.625 14 C -0.036 4.036 15 C -0.157 4.157 16 C -0.198 4.198 17 S 0.335 5.665 18 C -0.285 4.285 19 C 0.522 3.478 20 O -0.516 6.516 21 O -0.354 6.354 22 C 0.032 3.968 23 H 0.013 0.987 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.273 0.727 29 H 0.157 0.843 30 H 0.225 0.775 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 -5.591 -14.424 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.003 4.003 3 N -0.157 5.157 4 C -0.464 4.464 5 H 0.085 0.915 6 C -0.203 4.203 7 N -0.515 5.515 8 Si 0.815 3.185 9 H -0.206 1.206 10 H -0.201 1.201 11 H -0.184 1.184 12 C 0.276 3.724 13 O -0.513 6.513 14 C -0.056 4.056 15 C -0.187 4.187 16 C -0.336 4.336 17 S 0.604 5.396 18 C -0.404 4.404 19 C 0.366 3.634 20 O -0.406 6.406 21 O -0.271 6.271 22 C -0.061 4.061 23 H 0.033 0.967 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.175 0.825 30 H 0.242 0.758 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.614 -4.985 -15.201 17.311 hybrid contribution 1.256 0.920 2.598 3.029 sum -5.359 -4.065 -12.603 14.286 Atomic orbital electron populations 1.21934 0.96316 1.00766 0.99576 1.21739 0.94974 0.81777 1.01768 1.43803 1.54681 1.12420 1.04764 1.19652 1.29227 1.13406 0.84149 0.91525 1.26039 0.95421 0.97055 1.01789 1.70085 1.30741 1.23036 1.27655 0.84914 0.78050 0.78266 0.77281 1.20628 1.20098 1.18385 1.18023 0.84622 0.85255 0.84531 1.90569 1.51325 1.22332 1.87048 1.19685 0.94888 0.95792 0.95214 1.19990 1.04735 0.95799 0.98181 1.25788 1.01158 1.06608 1.00022 1.82402 1.30078 1.11134 1.15955 1.23831 1.06473 1.03042 1.07044 1.20141 0.77827 0.83642 0.81788 1.91015 1.63944 1.59395 1.26216 1.86507 1.51142 1.43694 1.45798 1.23591 0.96141 0.82691 1.03704 0.96750 0.91390 0.92697 0.91629 0.88442 0.91628 0.82507 0.75794 0.92530 0.92752 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 9.55 71.98 0.69 -5.04 16 2 C 0.12 5.60 5.04 86.38 0.44 6.03 16 3 N -0.44 -24.68 2.63 -639.25 -1.68 -26.36 16 4 C -0.34 -20.40 9.40 84.14 0.79 -19.61 16 5 H 0.07 4.39 7.30 -2.91 -0.02 4.37 16 6 C 0.00 -0.08 5.30 84.99 0.45 0.37 16 7 N -0.88 -45.85 7.83 21.69 0.17 -45.68 16 8 Si 0.99 44.35 29.55 68.60 2.03 46.38 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 12 C 0.49 27.39 5.97 86.67 0.52 27.91 16 13 O -0.62 -40.88 15.80 11.81 0.19 -40.69 16 14 C -0.04 -1.53 4.01 -20.71 -0.08 -1.62 16 15 C -0.16 -4.91 8.15 21.30 0.17 -4.74 16 16 C -0.20 -4.14 10.87 66.71 0.72 -3.41 16 17 S 0.34 7.66 22.92 -56.49 -1.29 6.37 16 18 C -0.28 -10.99 6.46 24.48 0.16 -10.83 16 19 C 0.52 22.38 7.92 70.03 0.55 22.93 16 20 O -0.52 -27.79 14.51 25.18 0.37 -27.42 16 21 O -0.35 -11.59 10.44 -57.87 -0.60 -12.20 16 22 C 0.03 0.81 10.57 113.37 1.20 2.00 16 23 H 0.01 0.61 7.24 -2.39 -0.02 0.60 16 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.05 2.84 6.22 -2.39 -0.01 2.82 16 26 H 0.07 2.59 5.04 -2.39 -0.01 2.57 16 27 H 0.10 4.85 5.88 -2.39 -0.01 4.84 16 28 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 29 H 0.16 4.55 7.36 -2.91 -0.02 4.53 16 30 H 0.23 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -82.95 296.17 5.92 -77.02 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.15 Total: 8.57 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 5.61 Total: 14.00 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.51 Total: -72.04 kcal Atomic # 8 Polarization: -80.25 SS G_CDS: -0.05 Total: -80.31 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 7.66 SS G_CDS: -1.29 Total: 6.37 kcal Total: -82.95 5.92 -77.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348570461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.651 kcal (2) G-P(sol) polarization free energy of solvation -82.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds