Wall clock time and date at job start Tue Mar 31 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00438 * 2 1 4 4 H 1.48501 * 109.46836 * 269.99696 * 3 2 1 5 5 H 1.48506 * 109.47001 * 29.99011 * 3 2 1 6 6 H 1.48490 * 109.47421 * 149.99385 * 3 2 1 7 7 C 1.37883 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99738 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00139 * 180.02562 * 7 2 1 10 10 O 1.42895 * 113.28509 * 313.07246 * 9 7 2 11 11 C 1.53499 * 114.20647 * 180.02562 * 9 7 2 12 12 N 1.47071 * 87.98478 * 220.15223 * 11 9 7 13 13 C 1.34776 * 136.05498 * 207.08849 * 12 11 9 14 14 O 1.21522 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.48072 * 119.99915 * 179.97438 * 13 12 11 16 16 N 1.33028 * 120.10507 * 0.02562 * 15 13 12 17 17 C 1.31767 * 119.94017 * 180.02562 * 16 15 13 18 18 C 1.38775 * 120.16413 * 0.02562 * 17 16 15 19 19 N 1.32093 * 120.21502 * 0.25533 * 18 17 16 20 20 C 1.32233 * 120.05711 * 359.48435 * 19 18 17 21 21 Cl 1.73610 * 120.08204 * 180.25165 * 20 19 18 22 22 C 1.47070 * 87.88593 * 27.34020 * 12 11 9 23 23 H 0.96998 * 119.99913 * 0.02562 * 1 2 3 24 24 H 0.96710 * 113.99916 * 46.93100 * 10 9 7 25 25 H 1.08995 * 113.46670 * 105.37214 * 11 9 7 26 26 H 1.09002 * 113.52023 * 334.93735 * 11 9 7 27 27 H 1.08008 * 119.91893 * 179.97438 * 17 16 15 28 28 H 1.08002 * 119.88843 * 179.97438 * 18 17 16 29 29 H 1.09001 * 113.46248 * 87.43758 * 22 12 11 30 30 H 1.09001 * 113.46862 * 217.88004 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 8 4.0768 -0.2980 -0.9577 11 6 4.1408 -2.5942 0.0010 12 7 5.1439 -2.0867 0.9493 13 6 6.4179 -2.3890 1.2684 14 8 6.9901 -3.2939 0.6934 15 6 7.1206 -1.6186 2.3197 16 7 6.4961 -0.6280 2.9509 17 6 7.1247 0.0559 3.8856 18 6 8.4371 -0.2544 4.2131 19 7 9.0650 -1.2331 3.5865 20 6 8.4408 -1.9284 2.6507 21 17 9.2633 -3.2191 1.8313 22 6 4.1428 -1.1083 1.4005 23 1 -0.4850 0.8400 -0.0004 24 1 3.6781 0.5831 -0.9554 25 1 4.5608 -2.8812 -0.9629 26 1 3.4932 -3.3623 0.4240 27 1 6.6175 0.8604 4.3975 28 1 8.9481 0.3093 4.9796 29 1 3.4951 -1.4840 2.1926 30 1 4.5645 -0.1295 1.6287 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350729198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:50 Heat of formation + Delta-G solvation = 34.964678 kcal Electronic energy + Delta-G solvation = -19934.699058 eV Core-core repulsion = 16566.332000 eV Total energy + Delta-G solvation = -3368.367057 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43617 -39.71775 -37.73753 -36.76962 -34.78648 -34.46270 -32.56775 -31.74641 -29.10701 -26.24903 -25.34162 -25.07437 -24.34204 -20.84209 -19.30132 -18.18481 -17.67540 -17.40924 -16.95216 -16.28762 -15.76745 -15.68756 -15.04034 -14.57906 -13.82334 -13.76919 -13.49335 -13.11466 -12.72441 -12.41005 -12.34215 -12.20118 -12.03498 -11.52521 -11.23442 -11.09818 -10.93241 -10.58310 -10.12446 -10.08801 -9.50202 -9.43754 -9.23251 -9.02068 -8.63324 -8.09893 -6.44534 -4.50384 0.07562 0.64733 1.57789 2.76482 2.97981 3.02001 3.05180 3.13698 3.59407 3.78220 3.90274 4.01255 4.12175 4.59815 4.71191 4.74753 4.88680 5.05446 5.56440 5.73763 5.96427 6.16797 6.27898 6.35975 6.48101 6.59781 6.70213 7.15985 7.24491 7.98322 8.13579 8.40111 8.49252 8.59063 9.13000 10.67513 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.005551 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.562664 B = 5042.473671 C = 5744.660823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.081 3.919 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.192 3.808 10 O -0.550 6.550 11 C 0.124 3.876 12 N -0.612 5.612 13 C 0.585 3.415 14 O -0.527 6.527 15 C 0.064 3.936 16 N -0.388 5.388 17 C 0.048 3.952 18 C 0.084 3.916 19 N -0.438 5.438 20 C 0.164 3.836 21 Cl 0.026 6.974 22 C 0.073 3.927 23 H 0.271 0.729 24 H 0.352 0.648 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.184 0.816 28 H 0.184 0.816 29 H 0.094 0.906 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.151 1.721 8.928 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.124 4.124 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.570 4.570 8 H 0.111 0.889 9 C 0.151 3.849 10 O -0.361 6.361 11 C 0.002 3.998 12 N -0.344 5.344 13 C 0.371 3.629 14 O -0.404 6.404 15 C -0.078 4.078 16 N -0.105 5.105 17 C -0.114 4.114 18 C -0.078 4.078 19 N -0.155 5.155 20 C -0.003 4.003 21 Cl 0.055 6.945 22 C -0.050 4.050 23 H 0.082 0.918 24 H 0.204 0.796 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.201 0.799 28 H 0.201 0.799 29 H 0.112 0.888 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.907 0.621 8.409 16.263 hybrid contribution 0.157 1.517 0.369 1.569 sum 14.064 2.138 8.778 16.716 Atomic orbital electron populations 1.69846 1.06041 1.27663 1.47496 1.24986 0.94914 0.98961 0.93565 0.87344 0.80486 0.84383 0.79206 1.19340 1.20993 1.18013 1.21118 0.87233 0.95777 1.52867 0.88882 1.20341 0.92461 0.87345 0.84803 1.86466 1.64427 1.24952 1.60294 1.23260 0.86252 0.97845 0.92423 1.49501 1.09212 1.36565 1.39103 1.16893 0.80995 0.83047 0.81990 1.90847 1.65753 1.30763 1.53046 1.22073 0.91703 0.95670 0.98344 1.68764 1.35254 1.02359 1.04103 1.24079 0.93540 0.99269 0.94548 1.24069 0.93286 0.92903 0.97495 1.68010 1.36663 1.05381 1.05456 1.22782 0.90342 0.93433 0.93739 1.98470 1.78277 1.43397 1.74328 1.24534 0.86805 0.92366 1.01333 0.91847 0.79572 0.90608 0.88334 0.79870 0.79942 0.88840 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.07 13.96 55.43 0.77 -23.29 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 18.68 24.42 -169.99 -4.15 14.53 16 4 H -0.27 -5.70 7.06 56.52 0.40 -5.30 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.25 -5.27 5.50 56.52 0.31 -4.96 16 7 C -0.53 -13.46 9.28 -34.44 -0.32 -13.78 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.19 4.32 1.10 -91.12 -0.10 4.22 16 10 O -0.55 -12.93 13.33 -35.23 -0.47 -13.40 16 11 C 0.12 2.53 8.02 -8.49 -0.07 2.46 16 12 N -0.61 -12.39 3.69 -186.04 -0.69 -13.07 16 13 C 0.59 11.56 8.06 -12.23 -0.10 11.46 16 14 O -0.53 -11.06 14.74 5.35 0.08 -10.98 16 15 C 0.06 1.09 6.75 -82.81 -0.56 0.53 16 16 N -0.39 -5.89 8.20 -9.59 -0.08 -5.97 16 17 C 0.05 0.50 11.22 -17.38 -0.20 0.31 16 18 C 0.08 0.79 11.23 -17.24 -0.19 0.60 16 19 N -0.44 -5.74 10.48 -9.82 -0.10 -5.85 16 20 C 0.16 2.54 7.32 -16.88 -0.12 2.42 16 21 Cl 0.03 0.41 26.19 -51.86 -1.36 -0.95 16 22 C 0.07 1.47 6.39 -8.36 -0.05 1.41 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.35 7.91 3.16 45.56 0.14 8.06 16 25 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.10 1.84 8.10 -51.93 -0.42 1.42 16 27 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 29 H 0.09 1.81 8.10 -51.93 -0.42 1.39 16 30 H 0.08 1.54 6.16 -51.93 -0.32 1.22 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -30.56 275.66 -5.58 -36.15 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -1.94 Total: 7.07 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -1.81 Total: 11.63 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.09 Total: -48.18 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.39 Total: -24.39 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.15 Total: 14.53 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.36 Total: -0.95 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.56 -5.58 -36.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350729198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.111 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds