Wall clock time and date at job start Tue Mar 31 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47382 * 346.19296 * 3 2 1 5 5 C 1.36939 * 119.99712 * 263.97677 * 4 3 2 6 6 H 1.08002 * 119.99293 * 198.08361 * 5 4 3 7 7 C 1.38811 * 120.00408 * 18.07920 * 5 4 3 8 8 N 1.31618 * 119.99591 * 23.32921 * 7 5 4 9 9 Si 1.86795 * 120.00210 * 203.32035 * 7 5 4 10 10 H 1.48505 * 109.46646 * 90.00589 * 9 7 5 11 11 H 1.48499 * 109.47340 * 210.00029 * 9 7 5 12 12 H 1.48499 * 109.47351 * 330.00708 * 9 7 5 13 13 C 1.46491 * 120.00158 * 83.97539 * 4 3 2 14 14 C 1.50698 * 109.47593 * 89.99762 * 13 4 3 15 15 C 1.38221 * 120.01388 * 260.00529 * 14 13 4 16 16 C 1.38317 * 120.08713 * 180.02562 * 15 14 13 17 17 Cl 1.73600 * 119.95566 * 179.97438 * 16 15 14 18 18 C 1.38403 * 120.09500 * 359.97438 * 16 15 14 19 19 C 1.38282 * 120.01836 * 359.97438 * 18 16 15 20 20 F 1.35106 * 120.04040 * 179.97438 * 19 18 16 21 21 C 1.38610 * 120.00697 * 79.72557 * 14 13 4 22 22 O 1.35977 * 120.04670 * 0.02562 * 21 14 13 23 23 H 4.40645 * 5.51336 * 180.02562 * 4 1 2 24 24 H 1.09006 * 109.46816 * 226.19247 * 3 2 1 25 25 H 1.09003 * 109.47356 * 106.19593 * 3 2 1 26 26 H 0.97001 * 119.99978 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47390 * 210.00420 * 13 4 3 28 28 H 1.09010 * 109.47102 * 330.00022 * 13 4 3 29 29 H 1.08003 * 119.95943 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.98879 * 179.97438 * 18 16 15 31 31 H 0.96695 * 114.00842 * 89.99864 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3404 0.3296 5 6 3.4807 -1.6453 1.6191 6 1 4.1023 -2.5048 1.8226 7 6 3.0323 -0.8498 2.6646 8 7 1.9507 -0.1149 2.5152 9 14 3.9638 -0.8226 4.2835 10 1 4.9958 0.2446 4.2428 11 1 3.0168 -0.5531 5.3951 12 1 4.6196 -2.1373 4.4995 13 6 3.2541 -2.3552 -0.7201 14 6 4.6268 -2.2808 -1.3374 15 6 4.8086 -1.6284 -2.5424 16 6 6.0678 -1.5597 -3.1106 17 17 6.2921 -0.7401 -4.6244 18 6 7.1493 -2.1434 -2.4740 19 6 6.9723 -2.7962 -1.2679 20 9 8.0276 -3.3666 -0.6463 21 6 5.7086 -2.8615 -0.6942 22 8 5.5322 -3.4992 0.4938 23 1 -1.0498 -0.0004 -0.0001 24 1 3.0090 0.7123 0.7417 25 1 3.0093 0.2875 -0.9869 26 1 1.6371 0.4407 3.2458 27 1 3.1031 -3.3444 -0.2881 28 1 2.5007 -2.1749 -1.4870 29 1 3.9664 -1.1718 -3.0409 30 1 8.1317 -2.0890 -2.9195 31 1 5.3297 -4.4408 0.4086 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352097454.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:23 Heat of formation + Delta-G solvation = 16.377525 kcal Electronic energy + Delta-G solvation = -19758.423311 eV Core-core repulsion = 16369.330292 eV Total energy + Delta-G solvation = -3389.093018 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.76449 -39.60203 -37.06004 -36.11371 -35.76716 -32.21168 -31.56340 -30.07935 -29.25265 -26.50509 -25.68287 -22.59794 -22.51613 -20.78855 -18.27868 -17.55571 -17.17038 -16.63826 -16.20274 -15.91725 -15.25964 -15.03063 -14.50949 -13.82969 -13.70086 -13.58042 -13.31361 -12.99238 -12.68946 -12.45508 -11.94006 -11.52972 -11.45691 -11.05130 -10.92782 -10.85414 -10.69849 -10.46984 -10.12207 -9.81590 -9.03252 -8.81904 -8.62661 -8.45795 -8.31872 -7.05465 -5.77435 -3.17857 1.06706 1.19376 2.05949 3.40703 3.45119 3.49397 3.52714 4.14514 4.16889 4.34766 4.48514 4.57575 4.83226 5.06673 5.26337 5.37614 5.54878 5.66724 5.79311 5.84210 5.93962 6.10003 6.17490 6.43765 6.61623 6.65822 6.75600 7.17138 7.37670 7.89711 7.94326 8.26831 9.10833 9.17389 9.76798 10.20317 11.26732 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.006491 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.335549 B = 4312.778295 C = 5525.943926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.097 4.097 3 C 0.266 3.734 4 N -0.572 5.572 5 C -0.261 4.261 6 H 0.094 0.906 7 C 0.002 3.998 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.278 1.278 13 C 0.187 3.813 14 C -0.071 4.071 15 C -0.101 4.101 16 C -0.020 4.020 17 Cl -0.070 7.070 18 C -0.149 4.149 19 C 0.078 3.922 20 F -0.133 7.133 21 C 0.105 3.895 22 O -0.462 6.462 23 H 0.191 0.809 24 H 0.094 0.906 25 H 0.036 0.964 26 H 0.253 0.747 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 -4.578 -11.889 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.100 4.100 3 C 0.141 3.859 4 N -0.289 5.289 5 C -0.390 4.390 6 H 0.112 0.888 7 C -0.197 4.197 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.204 1.204 13 C 0.059 3.941 14 C -0.076 4.076 15 C -0.121 4.121 16 C -0.047 4.047 17 Cl -0.041 7.041 18 C -0.169 4.169 19 C 0.057 3.943 20 F -0.111 7.111 21 C 0.057 3.943 22 O -0.271 6.271 23 H 0.208 0.792 24 H 0.112 0.888 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.605 -3.872 -11.568 13.872 hybrid contribution 0.392 -0.291 0.886 1.011 sum 6.997 -4.163 -10.683 13.432 Atomic orbital electron populations 1.24182 0.95333 1.03973 1.08069 1.24191 0.95196 0.96799 0.93838 1.17764 0.82945 0.88108 0.97114 1.44007 1.73733 1.06876 1.04307 1.19554 1.25175 1.12885 0.81367 0.88845 1.24911 0.96267 1.00774 0.97726 1.70158 1.19775 1.31204 1.32113 0.86359 0.79427 0.78061 0.83414 1.21629 1.22146 1.20351 1.19663 0.88221 0.94658 0.91557 1.21487 0.99518 0.94662 0.91921 1.20948 0.95679 0.99834 0.95626 1.20527 0.94531 1.00167 0.89472 1.98359 1.97436 1.77626 1.30689 1.20686 0.99650 1.01460 0.95066 1.17926 0.84211 0.99669 0.92449 1.91489 1.55096 1.82583 1.81964 1.18306 0.90078 0.98867 0.87009 1.85114 1.92338 1.25838 1.23839 0.79226 0.88794 0.94574 0.93659 0.91589 0.92724 0.84350 0.84106 0.76176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.58 19.25 29.55 0.57 -6.01 16 2 C -0.10 -2.30 11.55 -37.12 -0.43 -2.73 16 3 C 0.27 6.11 5.41 -6.83 -0.04 6.07 16 4 N -0.57 -13.18 2.47 -177.95 -0.44 -13.62 16 5 C -0.26 -6.76 9.37 -15.06 -0.14 -6.90 16 6 H 0.09 2.39 5.81 -52.49 -0.30 2.08 16 7 C 0.00 0.05 4.80 -17.43 -0.08 -0.03 16 8 N -0.89 -25.04 9.63 55.49 0.53 -24.50 16 9 Si 0.90 21.85 29.61 -169.99 -5.03 16.82 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.19 3.44 5.48 -5.20 -0.03 3.41 16 14 C -0.07 -1.16 5.47 -104.49 -0.57 -1.73 16 15 C -0.10 -1.45 9.45 -39.56 -0.37 -1.83 16 16 C -0.02 -0.27 6.32 -39.49 -0.25 -0.52 16 17 Cl -0.07 -0.83 28.95 -51.86 -1.50 -2.33 16 18 C -0.15 -2.00 9.80 -39.50 -0.39 -2.39 16 19 C 0.08 1.18 7.31 -39.30 -0.29 0.90 16 20 F -0.13 -2.08 17.11 2.25 0.04 -2.04 16 21 C 0.10 1.71 6.68 -39.18 -0.26 1.45 16 22 O -0.46 -7.74 10.28 -19.67 -0.20 -7.94 16 23 H 0.19 3.52 7.80 -54.10 -0.42 3.10 16 24 H 0.09 2.41 6.53 -51.93 -0.34 2.07 16 25 H 0.04 0.73 8.12 -51.93 -0.42 0.30 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 28 H 0.05 0.94 7.93 -51.92 -0.41 0.53 16 29 H 0.14 1.81 8.04 -52.48 -0.42 1.38 16 30 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.38 4.39 9.06 45.56 0.41 4.81 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -30.12 297.70 -6.27 -36.39 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -1.87 Total: 3.06 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -2.28 Total: -10.32 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.09 Total: -38.13 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.20 Total: -7.94 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.12 -6.27 -36.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352097454.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.770 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds