Wall clock time and date at job start Tue Mar 31 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47291 * 83.89210 * 3 2 1 5 5 C 1.36936 * 119.99864 * 272.00943 * 4 3 2 6 6 H 1.08002 * 119.99943 * 187.86417 * 5 4 3 7 7 C 1.38809 * 120.00007 * 7.86696 * 5 4 3 8 8 N 1.31618 * 120.00168 * 24.37678 * 7 5 4 9 9 Si 1.86799 * 120.00292 * 204.37242 * 7 5 4 10 10 H 1.48499 * 109.47043 * 89.99733 * 9 7 5 11 11 H 1.48492 * 109.47554 * 210.00257 * 9 7 5 12 12 H 1.48507 * 109.46871 * 330.00340 * 9 7 5 13 13 C 1.46501 * 120.00240 * 92.01113 * 4 3 2 14 14 C 1.50699 * 109.47193 * 270.00005 * 13 4 3 15 15 C 1.38180 * 119.99786 * 259.99646 * 14 13 4 16 16 C 1.38289 * 120.06905 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 119.97252 * 180.02562 * 16 15 14 18 18 C 1.38617 * 120.06299 * 0.02562 * 16 15 14 19 19 F 1.35097 * 120.00538 * 179.97438 * 18 16 15 20 20 C 1.38331 * 119.99202 * 0.02562 * 18 16 15 21 21 C 1.38705 * 119.99593 * 79.72082 * 14 13 4 22 22 O 1.35925 * 120.03135 * 0.02562 * 21 14 13 23 23 H 4.40635 * 5.51480 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.47723 * 323.88861 * 3 2 1 25 25 H 1.09006 * 109.47118 * 203.89059 * 3 2 1 26 26 H 0.96998 * 120.00616 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47132 * 150.00016 * 13 4 3 28 28 H 1.09007 * 109.46766 * 30.00212 * 13 4 3 29 29 H 1.08004 * 119.97000 * 359.97438 * 15 14 13 30 30 H 1.07993 * 120.03839 * 180.02562 * 20 18 16 31 31 H 0.96694 * 114.00237 * 90.00045 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.1461 -1.3733 5 6 3.3240 -1.3946 -1.9029 6 1 3.8020 -1.5063 -2.8649 7 6 2.9018 -2.5167 -1.2032 8 7 1.9339 -2.4142 -0.3172 9 14 3.7072 -4.1722 -1.5191 10 1 4.8639 -4.3427 -0.6035 11 1 2.7214 -5.2563 -1.2784 12 1 4.1768 -4.2337 -2.9266 13 6 3.4200 1.0429 -2.1802 14 6 2.1793 1.4492 -2.9329 15 6 2.0350 1.1060 -4.2636 16 6 0.8968 1.4776 -4.9555 17 17 0.7179 1.0446 -6.6271 18 6 -0.1014 2.1956 -4.3156 19 9 -1.2127 2.5585 -4.9929 20 6 0.0408 2.5414 -2.9838 21 6 1.1796 2.1626 -2.2882 22 8 1.3187 2.4961 -0.9779 23 1 -1.0500 0.0002 -0.0001 24 1 3.0098 -0.8294 0.6056 25 1 3.0089 0.9405 0.4162 26 1 1.6390 -3.1981 0.1720 27 1 4.2175 0.8182 -2.8886 28 1 3.7326 1.8582 -1.5277 29 1 2.8120 0.5469 -4.7639 30 1 -0.7366 3.1005 -2.4845 31 1 1.7486 3.3500 -0.8328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355357075.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:26 Heat of formation + Delta-G solvation = 23.689858 kcal Electronic energy + Delta-G solvation = -20095.454302 eV Core-core repulsion = 16706.678370 eV Total energy + Delta-G solvation = -3388.775932 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.69746 -39.55007 -36.80863 -36.07255 -35.61811 -32.12002 -31.33380 -30.11636 -29.23317 -26.13907 -25.62403 -22.78358 -22.33415 -20.64186 -18.41071 -17.52261 -16.71654 -16.53183 -16.15866 -15.66865 -15.47160 -14.99262 -14.16877 -13.85744 -13.67531 -13.53323 -13.29316 -13.02426 -12.56944 -12.05029 -11.77182 -11.46105 -11.39205 -11.01241 -10.82283 -10.75207 -10.66958 -10.35942 -10.27822 -9.97047 -8.80570 -8.75597 -8.60655 -8.24676 -8.01577 -7.17830 -5.84777 -3.19912 1.24548 1.39211 2.26594 3.34074 3.41148 3.43129 3.65377 4.16614 4.32495 4.53751 4.62116 4.77138 4.97855 5.19836 5.36374 5.46966 5.69203 5.76289 5.93197 6.06459 6.10156 6.25023 6.32987 6.46727 6.74584 6.79920 6.93683 7.31460 7.56946 7.68934 7.96006 8.15913 9.02995 9.47327 9.68297 10.10810 11.15163 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.006860 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.854886 B = 4080.896359 C = 4939.761262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.067 4.067 3 C 0.273 3.727 4 N -0.572 5.572 5 C -0.265 4.265 6 H 0.080 0.920 7 C 0.005 3.995 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.279 1.279 13 C 0.187 3.813 14 C -0.111 4.111 15 C -0.060 4.060 16 C -0.080 4.080 17 Cl -0.068 7.068 18 C 0.100 3.900 19 F -0.136 7.136 20 C -0.174 4.174 21 C 0.159 3.841 22 O -0.469 6.469 23 H 0.180 0.820 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.256 0.744 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 11.116 -4.448 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.070 4.070 3 C 0.149 3.851 4 N -0.289 5.289 5 C -0.394 4.394 6 H 0.098 0.902 7 C -0.195 4.195 8 N -0.521 5.521 9 Si 0.731 3.269 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.059 3.941 14 C -0.116 4.116 15 C -0.080 4.080 16 C -0.108 4.108 17 Cl -0.039 7.039 18 C 0.079 3.921 19 F -0.114 7.114 20 C -0.194 4.194 21 C 0.113 3.887 22 O -0.278 6.278 23 H 0.197 0.803 24 H 0.109 0.891 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.396 10.350 -4.372 11.243 hybrid contribution -0.494 -0.727 -0.638 1.086 sum -0.098 9.623 -5.010 10.850 Atomic orbital electron populations 1.23862 0.95052 1.09378 1.04495 1.23672 0.94680 0.92419 0.96225 1.17928 0.83442 0.98011 0.85742 1.44630 1.73954 1.01079 1.09231 1.19300 1.33183 0.82065 1.04846 0.90250 1.24872 0.97021 0.98025 0.99601 1.70185 1.24594 1.28974 1.28324 0.86291 0.78975 0.83634 0.77951 1.21290 1.21942 1.20484 1.19929 0.90969 0.89993 0.93176 1.21640 1.01216 0.96043 0.92693 1.20687 0.95706 0.98022 0.93625 1.20915 0.97593 1.05378 0.86905 1.98345 1.97672 1.92078 1.15781 1.16987 0.83895 1.00903 0.90295 1.91482 1.50123 1.89984 1.79834 1.21204 1.00737 1.05338 0.92134 1.17890 0.91897 0.95506 0.83414 1.85141 1.82203 1.40945 1.19500 0.80303 0.89072 0.94326 0.93353 0.91880 0.92513 0.84223 0.84258 0.76688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.30 18.78 29.55 0.56 -6.74 16 2 C -0.07 -1.61 8.54 -37.13 -0.32 -1.92 16 3 C 0.27 6.19 4.98 -6.83 -0.03 6.16 16 4 N -0.57 -12.91 2.48 -177.95 -0.44 -13.35 16 5 C -0.27 -6.73 9.70 -15.06 -0.15 -6.87 16 6 H 0.08 1.97 7.93 -52.49 -0.42 1.55 16 7 C 0.00 0.12 4.93 -17.43 -0.09 0.04 16 8 N -0.88 -24.33 9.00 55.49 0.50 -23.83 16 9 Si 0.90 21.00 29.62 -169.99 -5.03 15.97 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.19 3.33 5.50 -5.19 -0.03 3.30 16 14 C -0.11 -1.94 5.48 -104.47 -0.57 -2.51 16 15 C -0.06 -1.03 9.44 -39.58 -0.37 -1.41 16 16 C -0.08 -1.36 6.33 -39.42 -0.25 -1.61 16 17 Cl -0.07 -1.04 28.61 -51.86 -1.48 -2.53 16 18 C 0.10 1.68 7.27 -39.41 -0.29 1.39 16 19 F -0.14 -2.25 16.83 2.25 0.04 -2.21 16 20 C -0.17 -2.80 9.97 -39.37 -0.39 -3.19 16 21 C 0.16 2.64 5.91 -39.23 -0.23 2.41 16 22 O -0.47 -7.14 9.52 -19.51 -0.19 -7.33 16 23 H 0.18 3.80 7.80 -54.09 -0.42 3.38 16 24 H 0.09 2.29 6.38 -51.93 -0.33 1.96 16 25 H 0.04 0.76 7.80 -51.93 -0.41 0.35 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 27 H 0.06 1.06 7.89 -51.93 -0.41 0.65 16 28 H 0.06 0.87 7.60 -51.92 -0.39 0.47 16 29 H 0.14 2.25 8.04 -52.48 -0.42 1.82 16 30 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.38 3.60 9.06 45.56 0.41 4.01 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -29.96 293.07 -6.30 -36.26 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -1.94 Total: 3.56 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.16 Total: -10.95 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.06 Total: -37.19 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.19 Total: -7.33 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.53 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.96 -6.30 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355357075.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.952 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds