Wall clock time and date at job start Tue Mar 31 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47291 * 83.89210 * 3 2 1 5 5 C 1.36936 * 119.99864 * 272.00943 * 4 3 2 6 6 H 1.08002 * 119.99943 * 187.86417 * 5 4 3 7 7 C 1.38809 * 120.00007 * 7.86696 * 5 4 3 8 8 N 1.31618 * 120.00168 * 24.37678 * 7 5 4 9 9 Si 1.86799 * 120.00292 * 204.37242 * 7 5 4 10 10 H 1.48499 * 109.47043 * 89.99733 * 9 7 5 11 11 H 1.48492 * 109.47554 * 210.00257 * 9 7 5 12 12 H 1.48507 * 109.46871 * 330.00340 * 9 7 5 13 13 C 1.46501 * 120.00240 * 92.01113 * 4 3 2 14 14 C 1.50699 * 109.47193 * 270.00005 * 13 4 3 15 15 C 1.38180 * 119.99786 * 259.99646 * 14 13 4 16 16 C 1.38289 * 120.06905 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 119.97252 * 180.02562 * 16 15 14 18 18 C 1.38617 * 120.06299 * 0.02562 * 16 15 14 19 19 F 1.35097 * 120.00538 * 179.97438 * 18 16 15 20 20 C 1.38331 * 119.99202 * 0.02562 * 18 16 15 21 21 C 1.38705 * 119.99593 * 79.72082 * 14 13 4 22 22 O 1.35925 * 120.03135 * 0.02562 * 21 14 13 23 23 H 4.40635 * 5.51480 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.47723 * 323.88861 * 3 2 1 25 25 H 1.09006 * 109.47118 * 203.89059 * 3 2 1 26 26 H 0.96998 * 120.00616 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47132 * 150.00016 * 13 4 3 28 28 H 1.09007 * 109.46766 * 30.00212 * 13 4 3 29 29 H 1.08004 * 119.97000 * 359.97438 * 15 14 13 30 30 H 1.07993 * 120.03839 * 180.02562 * 20 18 16 31 31 H 0.96694 * 114.00237 * 90.00045 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.1461 -1.3733 5 6 3.3240 -1.3946 -1.9029 6 1 3.8020 -1.5063 -2.8649 7 6 2.9018 -2.5167 -1.2032 8 7 1.9339 -2.4142 -0.3172 9 14 3.7072 -4.1722 -1.5191 10 1 4.8639 -4.3427 -0.6035 11 1 2.7214 -5.2563 -1.2784 12 1 4.1768 -4.2337 -2.9266 13 6 3.4200 1.0429 -2.1802 14 6 2.1793 1.4492 -2.9329 15 6 2.0350 1.1060 -4.2636 16 6 0.8968 1.4776 -4.9555 17 17 0.7179 1.0446 -6.6271 18 6 -0.1014 2.1956 -4.3156 19 9 -1.2127 2.5585 -4.9929 20 6 0.0408 2.5414 -2.9838 21 6 1.1796 2.1626 -2.2882 22 8 1.3187 2.4961 -0.9779 23 1 -1.0500 0.0002 -0.0001 24 1 3.0098 -0.8294 0.6056 25 1 3.0089 0.9405 0.4162 26 1 1.6390 -3.1981 0.1720 27 1 4.2175 0.8182 -2.8886 28 1 3.7326 1.8582 -1.5277 29 1 2.8120 0.5469 -4.7639 30 1 -0.7366 3.1005 -2.4845 31 1 1.7486 3.3500 -0.8328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355357075.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:26 Heat of formation + Delta-G solvation = 6.572534 kcal Electronic energy + Delta-G solvation = -20096.196565 eV Core-core repulsion = 16706.678370 eV Total energy + Delta-G solvation = -3389.518195 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.01365 -40.84715 -38.07254 -37.68763 -36.91107 -33.74686 -33.14366 -31.60947 -30.61856 -27.89346 -27.20909 -24.13440 -23.87805 -22.10697 -19.68379 -19.28314 -18.20354 -17.84253 -17.75561 -17.08471 -16.87419 -16.55391 -15.66957 -15.41426 -15.15385 -14.90202 -14.79265 -14.62288 -13.90601 -13.49481 -13.32423 -13.12594 -12.98346 -12.66549 -12.39395 -12.16865 -12.09727 -11.98280 -11.84337 -11.53221 -10.68067 -10.53315 -10.04518 -9.89208 -9.38136 -8.97866 -7.78153 -5.13535 -0.04493 0.09716 0.99168 1.49796 1.53028 1.58825 2.31831 2.54931 2.70252 2.87405 2.96544 3.31386 3.41554 3.71827 3.97274 4.01931 4.19991 4.32679 4.48436 4.71174 4.79211 4.92048 5.00240 5.05820 5.15786 5.47447 5.49879 5.67050 5.71006 5.85386 6.29301 6.97667 7.14569 7.66671 7.88817 8.26835 9.20330 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.006860 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.854886 B = 4080.896359 C = 4939.761262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.075 4.075 3 C 0.277 3.723 4 N -0.586 5.586 5 C -0.260 4.260 6 H 0.082 0.918 7 C -0.046 4.046 8 N -0.909 5.909 9 Si 0.953 3.047 10 H -0.285 1.285 11 H -0.309 1.309 12 H -0.273 1.273 13 C 0.185 3.815 14 C -0.124 4.124 15 C -0.064 4.064 16 C -0.093 4.093 17 Cl -0.059 7.059 18 C 0.098 3.902 19 F -0.135 7.135 20 C -0.177 4.177 21 C 0.168 3.832 22 O -0.480 6.480 23 H 0.195 0.805 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.244 0.756 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 12.508 -5.004 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 C -0.078 4.078 3 C 0.152 3.848 4 N -0.304 5.304 5 C -0.390 4.390 6 H 0.099 0.901 7 C -0.243 4.243 8 N -0.554 5.554 9 Si 0.783 3.217 10 H -0.212 1.212 11 H -0.236 1.236 12 H -0.198 1.198 13 C 0.059 3.941 14 C -0.128 4.128 15 C -0.083 4.083 16 C -0.121 4.121 17 Cl -0.030 7.030 18 C 0.078 3.922 19 F -0.114 7.114 20 C -0.197 4.197 21 C 0.122 3.878 22 O -0.292 6.292 23 H 0.212 0.788 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.164 0.836 30 H 0.176 0.824 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 0.764 11.804 -4.966 12.829 hybrid contribution -0.594 -0.969 -0.545 1.261 sum 0.170 10.835 -5.512 12.158 Atomic orbital electron populations 1.24399 0.95895 1.09600 1.04667 1.24075 0.95313 0.92273 0.96118 1.17837 0.82904 0.98258 0.85820 1.44596 1.74359 1.01586 1.09896 1.19541 1.31747 0.83407 1.04282 0.90055 1.25411 0.97984 1.00453 1.00412 1.70328 1.26348 1.28633 1.30064 0.85479 0.77720 0.80568 0.77939 1.21227 1.23642 1.19766 1.20089 0.91189 0.89228 0.93585 1.21604 1.00909 0.97207 0.93117 1.20829 0.95986 0.97707 0.93803 1.20998 0.97758 1.05748 0.87583 1.98345 1.97647 1.92027 1.14955 1.17172 0.83793 1.00566 0.90706 1.91485 1.50087 1.89934 1.79890 1.21405 1.01122 1.05291 0.91862 1.17931 0.91519 0.94691 0.83663 1.85063 1.82643 1.43006 1.18538 0.78772 0.92128 0.91141 0.94660 0.90917 0.89521 0.83625 0.82393 0.73558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 -15.11 18.78 74.32 1.40 -13.72 16 2 C -0.07 -3.51 8.54 31.12 0.27 -3.25 16 3 C 0.28 12.22 4.98 84.57 0.42 12.64 16 4 N -0.59 -25.55 2.48 -716.90 -1.78 -27.33 16 5 C -0.26 -12.96 9.70 84.03 0.82 -12.14 16 6 H 0.08 3.93 7.93 -2.91 -0.02 3.90 16 7 C -0.05 -2.45 4.93 84.86 0.42 -2.03 16 8 N -0.91 -50.97 9.00 21.65 0.19 -50.78 16 9 Si 0.95 43.58 29.62 68.60 2.03 45.61 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.18 6.11 5.50 85.63 0.47 6.58 16 14 C -0.12 -4.05 5.48 -19.77 -0.11 -4.16 16 15 C -0.06 -2.06 9.44 22.27 0.21 -1.84 16 16 C -0.09 -2.99 6.33 22.37 0.14 -2.84 16 17 Cl -0.06 -1.72 28.61 -2.72 -0.08 -1.80 16 18 C 0.10 3.10 7.27 22.38 0.16 3.27 16 19 F -0.14 -4.23 16.83 44.97 0.76 -3.48 16 20 C -0.18 -5.24 9.97 22.41 0.22 -5.02 16 21 C 0.17 5.14 5.91 22.50 0.13 5.27 16 22 O -0.48 -13.11 9.52 -92.71 -0.88 -14.00 16 23 H 0.20 8.02 7.80 -4.42 -0.03 7.99 16 24 H 0.06 3.06 6.38 -2.39 -0.02 3.05 16 25 H 0.07 2.59 7.80 -2.38 -0.02 2.57 16 26 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.07 2.25 7.89 -2.39 -0.02 2.23 16 28 H 0.09 2.33 7.60 -2.38 -0.02 2.31 16 29 H 0.15 4.44 8.04 -2.91 -0.02 4.41 16 30 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.41 6.18 9.06 -74.06 -0.67 5.51 16 Total: -1.00 -62.85 293.07 5.30 -57.55 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.50 Total: 11.46 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 4.55 Total: -17.25 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.58 Total: -78.11 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.88 Total: -14.00 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.76 Total: -3.48 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -62.85 5.30 -57.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355357075.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.124 kcal (2) G-P(sol) polarization free energy of solvation -62.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds