Wall clock time and date at job start Tue Mar 31 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47115 * 2 1 4 4 C 1.50701 * 109.46764 * 240.00725 * 2 1 3 5 5 H 1.08001 * 119.99718 * 245.46064 * 4 2 1 6 6 C 1.37875 * 120.00323 * 65.46539 * 4 2 1 7 7 N 1.31517 * 119.99780 * 9.65116 * 6 4 2 8 8 Si 1.86797 * 120.00239 * 189.65017 * 6 4 2 9 9 H 1.48499 * 109.47458 * 84.99501 * 8 6 4 10 10 H 1.48500 * 109.47126 * 204.99317 * 8 6 4 11 11 H 1.48501 * 109.47017 * 324.98912 * 8 6 4 12 12 C 1.50694 * 109.47436 * 120.00910 * 2 1 3 13 13 O 1.21272 * 120.00347 * 119.99939 * 12 2 1 14 14 N 1.34786 * 119.99879 * 299.99775 * 12 2 1 15 15 C 1.46493 * 119.99907 * 179.97438 * 14 12 2 16 16 H 1.09001 * 109.47564 * 35.00211 * 15 14 12 17 17 C 1.50699 * 109.47305 * 274.99992 * 15 14 12 18 18 O 1.20826 * 119.99933 * 0.02562 * 17 15 14 19 19 O 1.34227 * 120.00070 * 180.02562 * 17 15 14 20 20 C 1.50702 * 109.46821 * 155.00344 * 15 14 12 21 21 C 1.33399 * 125.20100 * 220.00095 * 20 15 14 22 22 C 1.38423 * 114.91843 * 179.97438 * 21 20 15 23 23 C 1.33392 * 114.92487 * 359.97438 * 22 21 20 24 24 S 1.75885 * 125.20594 * 39.68908 * 20 15 14 25 25 H 1.08999 * 109.46522 * 303.68293 * 1 2 3 26 26 H 1.08997 * 109.46963 * 63.68583 * 1 2 3 27 27 H 1.08999 * 109.46543 * 183.68483 * 1 2 3 28 28 H 0.97001 * 119.99851 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99195 * 0.02562 * 14 12 2 30 30 H 0.96699 * 117.00027 * 179.97438 * 19 17 15 31 31 H 1.07997 * 122.53672 * 359.97438 * 21 20 15 32 32 H 1.07999 * 122.53402 * 180.02562 * 22 21 20 33 33 H 1.07995 * 125.20453 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5785 -1.6370 -1.1340 6 6 1.7946 -0.1771 -2.4797 7 7 1.3012 1.0367 -2.5934 8 14 2.1735 -1.1785 -4.0103 9 1 1.0200 -2.0597 -4.3234 10 1 2.4209 -0.2624 -5.1525 11 1 3.3809 -2.0095 -3.7718 12 6 2.0325 -0.7106 1.2303 13 8 2.7297 -1.6965 1.1189 14 7 1.7069 -0.2502 2.4545 15 6 2.1948 -0.9413 3.6505 16 1 3.1939 -1.3338 3.4612 17 6 1.2645 -2.0775 3.9889 18 8 0.2937 -2.2887 3.3012 19 8 1.5143 -2.8550 5.0541 20 6 2.2457 0.0268 4.8044 21 6 3.2149 0.0824 5.7193 22 6 3.0473 1.0570 6.6879 23 6 1.9425 1.7933 6.5592 24 16 1.0404 1.2612 5.1462 25 1 -0.3632 0.5700 0.8552 26 1 -0.3633 0.4555 -0.9212 27 1 -0.3632 -1.0256 0.0660 28 1 1.1336 1.4117 -3.4722 29 1 1.1489 0.5382 2.5435 30 1 0.8890 -3.5710 5.2313 31 1 4.0657 -0.5827 5.7054 32 1 3.7578 1.2103 7.4867 33 1 1.6485 2.5955 7.2198 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:26 Heat of formation + Delta-G solvation = -92.965703 kcal Electronic energy + Delta-G solvation = -19943.353579 eV Core-core repulsion = 16675.023093 eV Total energy + Delta-G solvation = -3268.330485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46508 -38.73441 -37.93772 -36.03569 -34.52466 -33.71259 -31.16733 -29.90057 -27.01763 -25.07880 -23.85279 -22.97855 -21.26016 -20.19354 -18.87848 -18.40250 -17.42713 -16.93551 -16.29803 -15.94223 -15.52399 -15.25261 -14.89629 -14.32255 -13.91710 -13.42450 -13.03865 -12.92866 -12.79569 -12.62104 -12.40967 -12.12835 -11.63615 -11.42753 -11.00664 -10.89849 -10.85182 -10.68642 -10.62630 -10.28948 -9.95937 -9.06187 -9.01621 -8.82419 -8.68136 -8.60647 -8.35179 -6.04709 -4.03360 0.72209 1.36121 1.78240 2.25936 2.52839 2.83744 3.36708 3.41787 3.47666 3.64659 3.87407 4.36931 4.49543 4.86061 5.17951 5.24171 5.30388 5.32483 5.38637 5.86458 6.03572 6.10328 6.23104 6.52566 6.58793 6.69005 6.84216 6.89756 7.42700 7.66710 7.91433 7.95961 8.01118 8.34758 9.03495 9.07417 9.60214 11.05914 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.004649 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.175536 B = 6021.095403 C = 6460.451683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.032 3.968 3 H 0.062 0.938 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.530 3.470 13 O -0.537 6.537 14 N -0.725 5.725 15 C 0.233 3.767 16 H 0.138 0.862 17 C 0.467 3.533 18 O -0.489 6.489 19 O -0.514 6.514 20 C -0.194 4.194 21 C -0.105 4.105 22 C -0.136 4.136 23 C -0.207 4.207 24 S 0.120 5.880 25 H 0.016 0.984 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.261 0.739 29 H 0.402 0.598 30 H 0.407 0.593 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 1.498 20.071 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.011 3.989 3 H 0.080 0.920 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.411 6.411 14 N -0.381 5.381 15 C 0.122 3.878 16 H 0.155 0.845 17 C 0.305 3.695 18 O -0.375 6.375 19 O -0.325 6.325 20 C -0.312 4.312 21 C -0.136 4.136 22 C -0.166 4.166 23 C -0.343 4.343 24 S 0.384 5.616 25 H 0.036 0.964 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.238 0.762 30 H 0.265 0.735 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.543 1.626 18.844 18.921 hybrid contribution 0.696 -0.998 0.094 1.220 sum 0.153 0.628 18.937 18.948 Atomic orbital electron populations 1.21672 0.96545 0.99560 1.00587 1.18900 0.93925 0.97423 0.88685 0.91987 1.21065 1.35462 1.08698 0.88982 0.90767 1.24934 0.95244 0.94716 0.99081 1.69961 1.45403 1.13926 1.23935 0.86508 0.78922 0.80003 0.82039 1.20544 1.21375 1.19783 1.22193 0.77742 0.84036 0.83933 1.90537 1.37741 1.26520 1.86348 1.46329 1.55894 1.31862 1.04009 1.18423 0.98449 0.87164 0.83726 0.84484 1.24006 0.85325 0.82814 0.77388 1.90758 1.28347 1.69264 1.49082 1.84521 1.56618 1.44465 1.46938 1.24137 1.01220 1.03639 1.02219 1.20140 0.99507 0.99782 0.94220 1.20155 0.98637 0.96834 1.00997 1.25734 1.00064 1.06180 1.02350 1.84481 1.24789 1.28888 1.23401 0.96448 0.90480 0.94487 0.92909 0.76244 0.73495 0.83552 0.83873 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.94 37.16 0.33 -2.63 16 2 C 0.03 0.80 2.50 -92.92 -0.23 0.57 16 3 H 0.06 1.62 8.08 -51.93 -0.42 1.20 16 4 C -0.50 -14.45 8.28 -34.44 -0.29 -14.74 16 5 H 0.07 2.25 6.79 -52.49 -0.36 1.89 16 6 C 0.06 1.73 5.17 -17.82 -0.09 1.64 16 7 N -0.89 -25.41 12.17 55.43 0.67 -24.73 16 8 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.53 12.33 6.98 -10.98 -0.08 12.26 16 13 O -0.54 -13.99 15.13 5.56 0.08 -13.91 16 14 N -0.72 -13.29 4.50 -56.07 -0.25 -13.55 16 15 C 0.23 3.63 2.91 -70.24 -0.20 3.43 16 16 H 0.14 2.15 7.56 -51.93 -0.39 1.76 16 17 C 0.47 7.50 7.65 36.00 0.28 7.78 16 18 O -0.49 -9.63 17.08 -18.75 -0.32 -9.95 16 19 O -0.51 -6.20 13.34 -39.25 -0.52 -6.72 16 20 C -0.19 -2.45 5.37 -36.00 -0.19 -2.64 16 21 C -0.11 -1.11 10.04 -41.20 -0.41 -1.52 16 22 C -0.14 -1.21 10.18 -41.21 -0.42 -1.63 16 23 C -0.21 -1.86 11.23 29.04 0.33 -1.53 16 24 S 0.12 1.35 22.30 -107.50 -2.40 -1.04 16 25 H 0.02 0.34 7.67 -51.93 -0.40 -0.06 16 26 H 0.08 1.95 6.83 -51.93 -0.35 1.60 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.40 6.69 7.15 -40.82 -0.29 6.40 16 30 H 0.41 3.17 9.10 45.56 0.41 3.58 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 308.44 15.07 4.65 4.65 Total: -1.00 -34.20 308.44 -6.72 -40.91 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -2.62 Total: 6.35 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.98 Total: 0.99 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.42 Total: -38.28 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.76 Total: -30.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.40 Total: -1.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.20 -6.72 -40.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.053 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds