Wall clock time and date at job start Tue Mar 31 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47350 * 2 1 4 4 C 1.50699 * 109.46793 * 120.00194 * 2 1 3 5 5 H 1.08004 * 120.00308 * 119.99963 * 4 2 1 6 6 C 1.37883 * 120.00375 * 299.99763 * 4 2 1 7 7 N 1.31513 * 120.00337 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99445 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47194 * 90.00047 * 8 6 4 10 10 H 1.48504 * 109.46944 * 210.00039 * 8 6 4 11 11 H 1.48508 * 109.47357 * 329.99771 * 8 6 4 12 12 C 1.50697 * 109.47300 * 239.99929 * 2 1 3 13 13 O 1.21281 * 120.00504 * 240.00718 * 12 2 1 14 14 N 1.34775 * 119.99972 * 60.00101 * 12 2 1 15 15 C 1.46497 * 120.00370 * 180.02562 * 14 12 2 16 16 H 1.08999 * 109.47255 * 34.99735 * 15 14 12 17 17 C 1.50700 * 109.47128 * 275.00352 * 15 14 12 18 18 O 1.20826 * 120.00162 * 0.27266 * 17 15 14 19 19 O 1.34234 * 120.00068 * 179.97438 * 17 15 14 20 20 C 1.50700 * 109.47426 * 155.00233 * 15 14 12 21 21 C 1.33389 * 125.20393 * 219.99809 * 20 15 14 22 22 C 1.38423 * 114.92285 * 179.97438 * 21 20 15 23 23 C 1.33389 * 114.91828 * 0.02562 * 22 21 20 24 24 S 1.75884 * 109.59568 * 359.75772 * 23 22 21 25 25 H 1.08998 * 109.47081 * 300.00106 * 1 2 3 26 26 H 1.09004 * 109.46799 * 59.99593 * 1 2 3 27 27 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 28 28 H 0.96994 * 119.99907 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00191 * 0.02562 * 14 12 2 30 30 H 0.96706 * 116.99872 * 179.97438 * 19 17 15 31 31 H 1.08004 * 122.53878 * 0.02562 * 21 20 15 32 32 H 1.07993 * 122.54160 * 180.02562 * 22 21 20 33 33 H 1.08004 * 125.20542 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 2.1379 -0.8592 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9950 3.9069 11 1 0.8471 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1192 14 7 1.7068 -0.2499 -2.4545 15 6 2.1947 -0.9408 -3.6507 16 1 2.2310 -2.0136 -3.4613 17 6 3.5764 -0.4436 -3.9896 18 8 4.1019 0.3976 -3.2995 19 8 4.2257 -0.9396 -5.0545 20 6 1.2648 -0.6655 -4.8042 21 6 0.8884 -1.5604 -5.7190 22 6 0.0254 -1.0771 -6.6873 23 6 -0.2986 0.2105 -6.5592 24 16 0.5048 0.8833 -5.1465 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9039 -0.5276 4.4376 29 1 1.1495 0.5389 -2.5436 30 1 5.1095 -0.5895 -5.2321 31 1 1.2304 -2.5848 -5.7047 32 1 -0.3567 -1.6955 -7.4859 33 1 -0.9567 0.7557 -7.2197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:29 Heat of formation + Delta-G solvation = -81.757263 kcal Electronic energy + Delta-G solvation = -19994.130592 eV Core-core repulsion = 16726.286142 eV Total energy + Delta-G solvation = -3267.844451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54654 -38.88370 -38.01858 -36.09996 -34.63393 -33.87310 -31.51400 -30.32024 -27.15195 -25.14208 -23.91953 -23.21693 -21.29995 -20.29066 -18.94515 -18.47795 -17.47036 -16.98981 -16.73582 -16.02041 -15.67655 -15.34171 -15.12124 -14.41768 -14.09953 -13.48476 -13.23374 -13.01089 -12.85689 -12.80708 -12.58476 -12.32043 -12.16370 -11.63968 -11.48323 -11.02803 -10.97312 -10.77200 -10.60516 -10.30463 -9.63934 -9.17280 -9.10873 -8.92681 -8.82381 -8.71313 -8.56663 -6.04223 -4.04738 0.65157 1.28547 1.70612 2.19644 2.46303 2.75134 3.24369 3.33226 3.37967 3.47202 3.75919 4.28706 4.39063 4.79876 5.10321 5.17305 5.23784 5.26293 5.32466 5.73304 5.82366 5.97418 6.10522 6.16000 6.28150 6.41581 6.47598 6.55017 6.70412 7.15029 7.49833 7.89150 7.89689 8.52952 8.90395 9.14381 9.54043 11.08645 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.005143 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.326115 B = 5443.292652 C = 6079.287694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.002 4.002 3 H 0.057 0.943 4 C -0.506 4.506 5 H 0.094 0.906 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.266 1.266 12 C 0.539 3.461 13 O -0.522 6.522 14 N -0.726 5.726 15 C 0.234 3.766 16 H 0.140 0.860 17 C 0.467 3.533 18 O -0.490 6.490 19 O -0.513 6.513 20 C -0.195 4.195 21 C -0.103 4.103 22 C -0.135 4.135 23 C -0.206 4.206 24 S 0.116 5.884 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.059 0.941 28 H 0.265 0.735 29 H 0.401 0.599 30 H 0.408 0.592 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 2.845 -22.896 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.074 0.926 4 C -0.544 4.544 5 H 0.112 0.888 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.328 3.672 13 O -0.395 6.395 14 N -0.382 5.382 15 C 0.124 3.876 16 H 0.157 0.843 17 C 0.305 3.695 18 O -0.376 6.376 19 O -0.324 6.324 20 C -0.313 4.313 21 C -0.134 4.134 22 C -0.166 4.166 23 C -0.342 4.342 24 S 0.380 5.620 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.266 0.734 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.934 3.622 -21.600 22.451 hybrid contribution -0.285 0.116 -0.675 0.742 sum -5.219 3.739 -22.275 23.182 Atomic orbital electron populations 1.22140 0.97084 1.01706 0.99429 1.19323 0.93345 0.97759 0.91880 0.92581 1.20904 1.32235 1.14151 0.87115 0.88816 1.24961 0.95821 0.96540 0.95710 1.69875 1.45376 1.40162 0.97865 0.86930 0.80678 0.83874 0.77209 1.20433 1.22237 1.19160 1.21459 0.78236 0.84012 0.83459 1.90591 1.36584 1.26215 1.86093 1.46240 1.54905 1.32987 1.04103 1.18419 0.84911 1.00812 0.83483 0.84256 1.23954 0.88732 0.79330 0.77444 1.90760 1.67400 1.30421 1.48996 1.84516 1.35078 1.65951 1.46892 1.24109 1.06712 0.98190 1.02272 1.20152 0.98254 1.00906 0.94124 1.20167 1.00233 0.95166 1.00990 1.25728 1.07041 0.99106 1.02281 1.84441 1.42700 1.11231 1.23633 0.93066 0.94760 0.92140 0.92529 0.76346 0.73358 0.83456 0.83802 0.81568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.57 37.16 0.32 -2.69 16 2 C 0.00 -0.04 2.23 -92.92 -0.21 -0.24 16 3 H 0.06 1.33 7.20 -51.93 -0.37 0.96 16 4 C -0.51 -14.79 8.96 -34.44 -0.31 -15.10 16 5 H 0.09 3.11 7.00 -52.48 -0.37 2.74 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -27.84 13.96 55.43 0.77 -27.07 16 8 Si 0.88 21.50 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 12 C 0.54 12.06 6.97 -10.99 -0.08 11.98 16 13 O -0.52 -13.46 15.12 5.56 0.08 -13.37 16 14 N -0.73 -12.56 4.49 -56.07 -0.25 -12.81 16 15 C 0.23 3.48 2.91 -70.24 -0.20 3.27 16 16 H 0.14 2.09 7.56 -51.93 -0.39 1.70 16 17 C 0.47 7.26 7.65 36.01 0.28 7.53 16 18 O -0.49 -9.42 17.07 -18.75 -0.32 -9.74 16 19 O -0.51 -5.96 13.34 -39.27 -0.52 -6.48 16 20 C -0.20 -2.30 5.37 -36.00 -0.19 -2.50 16 21 C -0.10 -1.01 10.04 -41.21 -0.41 -1.43 16 22 C -0.14 -1.12 10.18 -41.21 -0.42 -1.54 16 23 C -0.21 -1.70 11.23 29.04 0.33 -1.37 16 24 S 0.12 1.21 22.30 -107.50 -2.40 -1.19 16 25 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 26 H 0.03 0.56 7.57 -51.93 -0.39 0.16 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.40 6.10 7.09 -40.82 -0.29 5.81 16 30 H 0.41 3.02 9.10 45.56 0.41 3.44 16 31 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.17 0.95 8.06 -52.48 -0.42 0.52 16 LS Contribution 300.11 15.07 4.52 4.52 Total: -1.00 -36.20 300.11 -5.70 -41.90 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -2.44 Total: 6.98 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.00 Total: -0.10 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.52 Total: -39.88 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.76 Total: -29.59 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.14 Total: 17.36 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.40 Total: -1.19 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.20 -5.70 -41.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.857 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds