Wall clock time and date at job start Tue Mar 31 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47350 * 2 1 4 4 C 1.50699 * 109.46793 * 120.00194 * 2 1 3 5 5 H 1.08004 * 120.00308 * 119.99963 * 4 2 1 6 6 C 1.37883 * 120.00375 * 299.99763 * 4 2 1 7 7 N 1.31513 * 120.00337 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99445 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47194 * 90.00047 * 8 6 4 10 10 H 1.48504 * 109.46944 * 210.00039 * 8 6 4 11 11 H 1.48508 * 109.47357 * 329.99771 * 8 6 4 12 12 C 1.50697 * 109.47300 * 239.99929 * 2 1 3 13 13 O 1.21281 * 120.00504 * 240.00718 * 12 2 1 14 14 N 1.34775 * 119.99972 * 60.00101 * 12 2 1 15 15 C 1.46497 * 120.00370 * 180.02562 * 14 12 2 16 16 H 1.08999 * 109.47255 * 34.99735 * 15 14 12 17 17 C 1.50700 * 109.47128 * 275.00352 * 15 14 12 18 18 O 1.20826 * 120.00162 * 0.27266 * 17 15 14 19 19 O 1.34234 * 120.00068 * 179.97438 * 17 15 14 20 20 C 1.50700 * 109.47426 * 155.00233 * 15 14 12 21 21 C 1.33389 * 125.20393 * 219.99809 * 20 15 14 22 22 C 1.38423 * 114.92285 * 179.97438 * 21 20 15 23 23 C 1.33389 * 114.91828 * 0.02562 * 22 21 20 24 24 S 1.75884 * 109.59568 * 359.75772 * 23 22 21 25 25 H 1.08998 * 109.47081 * 300.00106 * 1 2 3 26 26 H 1.09004 * 109.46799 * 59.99593 * 1 2 3 27 27 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 28 28 H 0.96994 * 119.99907 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00191 * 0.02562 * 14 12 2 30 30 H 0.96706 * 116.99872 * 179.97438 * 19 17 15 31 31 H 1.08004 * 122.53878 * 0.02562 * 21 20 15 32 32 H 1.07993 * 122.54160 * 180.02562 * 22 21 20 33 33 H 1.08004 * 125.20542 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 2.1379 -0.8592 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9950 3.9069 11 1 0.8471 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1192 14 7 1.7068 -0.2499 -2.4545 15 6 2.1947 -0.9408 -3.6507 16 1 2.2310 -2.0136 -3.4613 17 6 3.5764 -0.4436 -3.9896 18 8 4.1019 0.3976 -3.2995 19 8 4.2257 -0.9396 -5.0545 20 6 1.2648 -0.6655 -4.8042 21 6 0.8884 -1.5604 -5.7190 22 6 0.0254 -1.0771 -6.6873 23 6 -0.2986 0.2105 -6.5592 24 16 0.5048 0.8833 -5.1465 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9039 -0.5276 4.4376 29 1 1.1495 0.5389 -2.5436 30 1 5.1095 -0.5895 -5.2321 31 1 1.2304 -2.5848 -5.7047 32 1 -0.3567 -1.6955 -7.4859 33 1 -0.9567 0.7557 -7.2197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592212137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:29 Heat of formation + Delta-G solvation = -110.427339 kcal Electronic energy + Delta-G solvation = -19995.373820 eV Core-core repulsion = 16726.286142 eV Total energy + Delta-G solvation = -3269.087679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84207 -40.46689 -38.82640 -37.28262 -36.03154 -35.85779 -33.48455 -31.55080 -28.17816 -27.12844 -24.99719 -24.68067 -22.57807 -21.64515 -19.99861 -19.58076 -18.87617 -18.58842 -18.20447 -17.40340 -17.14716 -16.64428 -16.26925 -16.03569 -15.66303 -15.03214 -14.70872 -14.42216 -14.05267 -13.83846 -13.70056 -13.58374 -13.43893 -13.00670 -12.86330 -12.66167 -12.56577 -12.17957 -12.05309 -11.71423 -11.49485 -11.26042 -10.82452 -10.71087 -10.46904 -9.74905 -9.46325 -8.28161 -6.36371 -0.09701 0.51280 0.97433 1.02545 1.32069 1.40065 1.43724 1.50574 1.73578 1.88742 2.33607 2.45005 3.05157 3.29809 3.86696 4.10602 4.15324 4.25041 4.37944 4.52818 4.57023 4.69678 4.73381 4.96790 5.07614 5.17683 5.29666 5.41424 5.44442 5.47961 5.51833 6.17727 6.44136 6.77436 6.82589 7.17943 7.30737 8.89354 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.005143 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.326115 B = 5443.292652 C = 6079.287694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 H 0.065 0.935 4 C -0.522 4.522 5 H 0.032 0.968 6 C 0.009 3.991 7 N -0.950 5.950 8 Si 0.957 3.043 9 H -0.254 1.254 10 H -0.299 1.299 11 H -0.235 1.235 12 C 0.540 3.460 13 O -0.570 6.570 14 N -0.708 5.708 15 C 0.233 3.767 16 H 0.134 0.866 17 C 0.472 3.528 18 O -0.536 6.536 19 O -0.497 6.497 20 C -0.225 4.225 21 C -0.090 4.090 22 C -0.141 4.141 23 C -0.186 4.186 24 S 0.095 5.905 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.268 0.732 29 H 0.413 0.587 30 H 0.428 0.572 31 H 0.160 0.840 32 H 0.174 0.826 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 4.609 -26.004 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.083 0.917 4 C -0.560 4.560 5 H 0.050 0.950 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.781 3.219 9 H -0.180 1.180 10 H -0.226 1.226 11 H -0.159 1.159 12 C 0.329 3.671 13 O -0.447 6.447 14 N -0.363 5.363 15 C 0.123 3.877 16 H 0.151 0.849 17 C 0.312 3.688 18 O -0.425 6.425 19 O -0.310 6.310 20 C -0.342 4.342 21 C -0.122 4.122 22 C -0.171 4.171 23 C -0.322 4.322 24 S 0.358 5.642 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.251 0.749 30 H 0.290 0.710 31 H 0.177 0.823 32 H 0.192 0.808 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.541 5.397 -24.803 26.480 hybrid contribution 0.608 -0.555 0.118 0.832 sum -6.933 4.842 -24.684 26.093 Atomic orbital electron populations 1.22031 0.93834 1.02184 1.01666 1.19273 0.95912 0.97273 0.90443 0.91724 1.21034 1.31863 1.12950 0.90151 0.94973 1.25997 0.97424 1.00607 0.94754 1.70064 1.47485 1.42723 0.98721 0.85746 0.79115 0.79040 0.77961 1.17988 1.22628 1.15862 1.21173 0.77770 0.83380 0.84781 1.90572 1.38796 1.28336 1.86991 1.45851 1.53959 1.32912 1.03549 1.18470 0.85653 1.00008 0.83538 0.84896 1.24045 0.88894 0.78443 0.77390 1.90745 1.68462 1.32645 1.50650 1.84458 1.36334 1.65167 1.45039 1.23795 1.08319 0.99724 1.02408 1.20481 0.97162 1.01152 0.93375 1.20457 0.99782 0.95560 1.01280 1.26133 1.06027 0.99058 1.00982 1.84496 1.43304 1.10911 1.25461 0.93291 0.89805 0.92733 0.92303 0.74901 0.71019 0.82288 0.80842 0.78619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.57 71.98 0.62 -4.79 16 2 C -0.01 -0.35 2.23 -12.29 -0.03 -0.38 16 3 H 0.07 2.98 7.20 -2.39 -0.02 2.96 16 4 C -0.52 -31.85 8.96 25.60 0.23 -31.62 16 5 H 0.03 2.30 7.00 -2.91 -0.02 2.28 16 6 C 0.01 0.53 5.45 84.66 0.46 0.99 16 7 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 8 Si 0.96 43.79 24.37 68.60 1.67 45.47 16 9 H -0.25 -10.69 6.87 99.48 0.68 -10.01 16 10 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.24 -9.53 6.53 99.48 0.65 -8.88 16 12 C 0.54 24.59 6.97 87.66 0.61 25.20 16 13 O -0.57 -30.96 15.12 -3.03 -0.05 -31.01 16 14 N -0.71 -24.05 4.49 -449.70 -2.02 -26.06 16 15 C 0.23 6.79 2.91 43.50 0.13 6.92 16 16 H 0.13 4.03 7.56 -2.39 -0.02 4.01 16 17 C 0.47 14.52 7.65 71.24 0.54 15.07 16 18 O -0.54 -20.81 17.07 21.96 0.37 -20.44 16 19 O -0.50 -10.91 13.34 -51.46 -0.69 -11.60 16 20 C -0.23 -4.87 5.37 24.59 0.13 -4.74 16 21 C -0.09 -1.50 10.04 21.22 0.21 -1.29 16 22 C -0.14 -1.74 10.18 21.22 0.22 -1.53 16 23 C -0.19 -2.29 11.23 66.72 0.75 -1.55 16 24 S 0.09 1.72 22.30 -56.49 -1.26 0.46 16 25 H 0.05 1.92 3.27 -2.39 -0.01 1.91 16 26 H 0.08 2.40 7.57 -2.39 -0.02 2.38 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 29 H 0.41 11.84 7.09 -92.71 -0.66 11.18 16 30 H 0.43 5.71 9.10 -74.05 -0.67 5.03 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -84.49 300.11 1.98 -82.52 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.23 Total: 19.72 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 3.87 Total: 2.29 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.72 Total: -87.41 kcal Atomic # 8 Polarization: -62.68 SS G_CDS: -0.36 Total: -63.04 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.67 Total: 45.47 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.26 Total: 0.46 kcal Total: -84.49 1.98 -82.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.912 kcal (2) G-P(sol) polarization free energy of solvation -84.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds