Wall clock time and date at job start Tue Mar 31 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21288 * 120.00038 * 239.99878 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.46505 * 120.00115 * 180.02562 * 14 12 2 16 16 H 1.08993 * 109.46761 * 324.99835 * 15 14 12 17 17 C 1.50697 * 109.46992 * 84.99748 * 15 14 12 18 18 O 1.20829 * 120.00430 * 0.02562 * 17 15 14 19 19 O 1.34230 * 120.00038 * 179.97438 * 17 15 14 20 20 C 1.50697 * 109.46900 * 204.99741 * 15 14 12 21 21 C 1.33387 * 125.20227 * 139.71670 * 20 15 14 22 22 C 1.38420 * 114.92605 * 179.86140 * 21 20 15 23 23 C 1.33396 * 114.91807 * 0.42929 * 22 21 20 24 24 S 1.75879 * 125.20608 * 320.02601 * 20 15 14 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 30 30 H 0.96700 * 117.00604 * 180.02562 * 19 17 15 31 31 H 1.08001 * 122.53872 * 0.02562 * 21 20 15 32 32 H 1.07998 * 122.54657 * 180.20124 * 22 21 20 33 33 H 1.07996 * 125.20238 * 179.74865 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1948 -0.9406 -3.6508 16 1 3.1938 -1.3331 -3.4615 17 6 1.2645 -2.0769 -3.9892 18 8 0.2933 -2.2877 -3.3021 19 8 1.5143 -2.8541 -5.0547 20 6 2.2456 0.0276 -4.8045 21 6 3.2173 0.0870 -5.7163 22 6 3.0474 1.0586 -6.6875 23 6 1.9421 1.7944 -6.5591 24 16 1.0366 1.2574 -5.1501 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1615 3.4845 29 1 1.1489 0.5386 -2.5435 30 1 0.8891 -3.5702 -5.2320 31 1 4.0706 -0.5748 -5.6998 32 1 3.7578 1.2120 -7.4863 33 1 1.6485 2.5972 -7.2191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212138.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:33 Heat of formation + Delta-G solvation = -91.598830 kcal Electronic energy + Delta-G solvation = -19953.153525 eV Core-core repulsion = 16684.882312 eV Total energy + Delta-G solvation = -3268.271213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45923 -38.72992 -37.93938 -36.02871 -34.52353 -33.74894 -31.13327 -29.83886 -27.00815 -25.10658 -23.85265 -22.93200 -21.24732 -20.18604 -18.87662 -18.39800 -17.42559 -16.93548 -16.28220 -15.94469 -15.52221 -15.25605 -14.90025 -14.33202 -13.91207 -13.42195 -13.03378 -12.92592 -12.80538 -12.62264 -12.42056 -12.12437 -11.53032 -11.41947 -11.00556 -10.89679 -10.74737 -10.66161 -10.63750 -10.24017 -9.96233 -9.05292 -8.96060 -8.82007 -8.71324 -8.63503 -8.33728 -6.01710 -4.04849 0.72094 1.36090 1.78255 2.26462 2.52794 2.84074 3.34145 3.41501 3.49740 3.65092 3.87421 4.37012 4.49021 4.85923 5.17823 5.24182 5.31196 5.32897 5.38447 5.86343 6.03543 6.12446 6.23131 6.53289 6.64612 6.71013 6.88837 6.96543 7.48517 7.76491 7.92123 7.96660 8.09418 8.35243 9.02801 9.07446 9.60230 11.06006 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.004631 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.236937 B = 6044.986574 C = 6442.301399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.033 3.967 3 H 0.056 0.944 4 C -0.500 4.500 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.530 3.470 13 O -0.538 6.538 14 N -0.725 5.725 15 C 0.233 3.767 16 H 0.138 0.862 17 C 0.466 3.534 18 O -0.489 6.489 19 O -0.514 6.514 20 C -0.194 4.194 21 C -0.105 4.105 22 C -0.136 4.136 23 C -0.207 4.207 24 S 0.121 5.879 25 H 0.034 0.966 26 H 0.094 0.906 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.402 0.598 30 H 0.407 0.593 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 1.919 -19.982 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.321 3.679 13 O -0.412 6.412 14 N -0.381 5.381 15 C 0.122 3.878 16 H 0.155 0.845 17 C 0.304 3.696 18 O -0.374 6.374 19 O -0.326 6.326 20 C -0.312 4.312 21 C -0.137 4.137 22 C -0.166 4.166 23 C -0.343 4.343 24 S 0.385 5.615 25 H 0.053 0.947 26 H 0.113 0.887 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.238 0.762 30 H 0.265 0.735 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.146 2.016 -18.759 18.868 hybrid contribution 0.814 -0.942 -0.119 1.251 sum 0.961 1.074 -18.878 18.933 Atomic orbital electron populations 1.21735 0.96122 1.00192 1.00880 1.18901 0.94418 0.96859 0.88631 0.92668 1.21161 1.31023 1.12822 0.88867 0.90690 1.24945 0.95093 0.95076 0.99114 1.69888 1.37077 1.23076 1.23455 0.86382 0.78604 0.79756 0.82418 1.19571 1.21035 1.21046 1.22213 0.77671 0.84080 0.83976 1.90540 1.37788 1.26530 1.86373 1.46320 1.55884 1.31861 1.04000 1.18421 0.98447 0.87163 0.83723 0.84497 1.24006 0.85350 0.82823 0.77401 1.90763 1.28296 1.69232 1.49083 1.84520 1.56637 1.44480 1.46926 1.24132 1.01099 1.03723 1.02259 1.20136 0.99505 0.99803 0.94211 1.20155 0.98661 0.96865 1.00950 1.25737 1.00060 1.06139 1.02405 1.84491 1.24430 1.28964 1.23634 0.94701 0.88738 0.96952 0.92994 0.76227 0.73494 0.83558 0.83875 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.87 37.16 0.33 -2.84 16 2 C 0.03 0.84 2.64 -92.92 -0.25 0.59 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.07 2.27 6.75 -52.48 -0.35 1.92 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.53 12.37 6.98 -10.99 -0.08 12.29 16 13 O -0.54 -14.05 15.12 5.55 0.08 -13.96 16 14 N -0.72 -13.35 4.49 -56.07 -0.25 -13.61 16 15 C 0.23 3.65 2.91 -70.23 -0.20 3.45 16 16 H 0.14 2.15 7.56 -51.93 -0.39 1.76 16 17 C 0.47 7.56 7.65 36.00 0.28 7.83 16 18 O -0.49 -9.72 17.08 -18.75 -0.32 -10.04 16 19 O -0.51 -6.25 13.34 -39.26 -0.52 -6.77 16 20 C -0.19 -2.45 5.37 -36.01 -0.19 -2.64 16 21 C -0.11 -1.11 10.04 -41.21 -0.41 -1.52 16 22 C -0.14 -1.21 10.18 -41.21 -0.42 -1.63 16 23 C -0.21 -1.86 11.23 29.04 0.33 -1.53 16 24 S 0.12 1.36 22.31 -107.50 -2.40 -1.04 16 25 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.40 6.74 7.09 -40.82 -0.29 6.45 16 30 H 0.41 3.21 9.10 45.56 0.41 3.63 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -34.17 306.95 -6.76 -40.93 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -2.58 Total: 6.68 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.00 Total: 0.88 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.38 Total: -38.31 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.76 Total: -30.77 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.40 Total: -1.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.17 -6.76 -40.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212138.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.669 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds