Wall clock time and date at job start Tue Mar 31 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21288 * 120.00038 * 239.99878 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.46505 * 120.00115 * 180.02562 * 14 12 2 16 16 H 1.08993 * 109.46761 * 324.99835 * 15 14 12 17 17 C 1.50697 * 109.46992 * 84.99748 * 15 14 12 18 18 O 1.20829 * 120.00430 * 0.02562 * 17 15 14 19 19 O 1.34230 * 120.00038 * 179.97438 * 17 15 14 20 20 C 1.50697 * 109.46900 * 204.99741 * 15 14 12 21 21 C 1.33387 * 125.20227 * 139.71670 * 20 15 14 22 22 C 1.38420 * 114.92605 * 179.86140 * 21 20 15 23 23 C 1.33396 * 114.91807 * 0.42929 * 22 21 20 24 24 S 1.75879 * 125.20608 * 320.02601 * 20 15 14 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 30 30 H 0.96700 * 117.00604 * 180.02562 * 19 17 15 31 31 H 1.08001 * 122.53872 * 0.02562 * 21 20 15 32 32 H 1.07998 * 122.54657 * 180.20124 * 22 21 20 33 33 H 1.07996 * 125.20238 * 179.74865 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1948 -0.9406 -3.6508 16 1 3.1938 -1.3331 -3.4615 17 6 1.2645 -2.0769 -3.9892 18 8 0.2933 -2.2877 -3.3021 19 8 1.5143 -2.8541 -5.0547 20 6 2.2456 0.0276 -4.8045 21 6 3.2173 0.0870 -5.7163 22 6 3.0474 1.0586 -6.6875 23 6 1.9421 1.7944 -6.5591 24 16 1.0366 1.2574 -5.1501 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1615 3.4845 29 1 1.1489 0.5386 -2.5435 30 1 0.8891 -3.5702 -5.2320 31 1 4.0706 -0.5748 -5.6998 32 1 3.7578 1.2120 -7.4863 33 1 1.6485 2.5972 -7.2191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592212138.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:33 Heat of formation + Delta-G solvation = -115.952274 kcal Electronic energy + Delta-G solvation = -19954.209570 eV Core-core repulsion = 16684.882312 eV Total energy + Delta-G solvation = -3269.327258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.80172 -40.37683 -38.81916 -37.25773 -35.99823 -35.80410 -32.90480 -31.29736 -28.11534 -27.22493 -24.83036 -24.62259 -22.59709 -21.59697 -20.00606 -19.56132 -18.67881 -18.32991 -18.21817 -17.36336 -16.99558 -16.53330 -16.30757 -15.85151 -15.68760 -14.86838 -14.58931 -14.33425 -13.83649 -13.67715 -13.55766 -13.49547 -13.03722 -12.97281 -12.70768 -12.65226 -12.61191 -12.26520 -12.04868 -12.02861 -11.70454 -11.07270 -10.73010 -10.50582 -10.38872 -9.74750 -9.47651 -8.16278 -6.26970 -0.09533 0.51364 0.98663 1.03942 1.39764 1.41529 1.47222 1.55621 1.75532 1.95852 2.39854 2.53530 3.13424 3.31152 3.92623 4.16609 4.24551 4.29639 4.54288 4.68997 4.69489 4.89569 4.96176 5.10167 5.19891 5.28981 5.44006 5.46308 5.52022 5.71097 5.86642 6.13124 6.47590 6.80835 6.84632 7.25980 7.42109 8.90222 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.004631 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.236937 B = 6044.986574 C = 6442.301399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.027 3.973 3 H 0.049 0.951 4 C -0.529 4.529 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.275 1.275 12 C 0.533 3.467 13 O -0.573 6.573 14 N -0.710 5.710 15 C 0.232 3.768 16 H 0.134 0.866 17 C 0.472 3.528 18 O -0.534 6.534 19 O -0.497 6.497 20 C -0.225 4.225 21 C -0.090 4.090 22 C -0.140 4.140 23 C -0.187 4.187 24 S 0.088 5.912 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.266 0.734 29 H 0.410 0.590 30 H 0.428 0.572 31 H 0.162 0.838 32 H 0.176 0.824 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 2.631 -21.944 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.006 3.994 3 H 0.067 0.933 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.323 3.677 13 O -0.451 6.451 14 N -0.364 5.364 15 C 0.122 3.878 16 H 0.152 0.848 17 C 0.312 3.688 18 O -0.423 6.423 19 O -0.310 6.310 20 C -0.342 4.342 21 C -0.122 4.122 22 C -0.170 4.170 23 C -0.323 4.323 24 S 0.351 5.649 25 H 0.036 0.964 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.247 0.753 30 H 0.289 0.711 31 H 0.179 0.821 32 H 0.194 0.806 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.693 2.746 -20.784 20.976 hybrid contribution 0.667 -1.133 0.312 1.352 sum 1.360 1.613 -20.473 20.581 Atomic orbital electron populations 1.21537 0.95269 0.99172 1.01509 1.18827 0.95089 0.96331 0.89177 0.93302 1.21274 1.31769 1.12794 0.90882 0.93140 1.25616 0.95115 0.95747 1.01478 1.69960 1.37090 1.23540 1.24356 0.85493 0.78303 0.78588 0.79195 1.20398 1.19659 1.20091 1.21697 0.77443 0.83481 0.85052 1.90510 1.39532 1.27946 1.87159 1.45951 1.54949 1.31769 1.03776 1.18486 0.97796 0.87910 0.83564 0.84824 1.24027 0.84519 0.82835 0.77398 1.90751 1.30250 1.70509 1.50778 1.84455 1.56941 1.44636 1.44957 1.23829 1.03053 1.04814 1.02530 1.20492 0.98801 0.99562 0.93334 1.20474 0.99245 0.96031 1.01245 1.26137 0.99060 1.06162 1.00923 1.84608 1.25237 1.29262 1.25780 0.96376 0.90555 0.93730 0.92505 0.75267 0.71071 0.82063 0.80650 0.78602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.87 71.98 0.64 -5.10 16 2 C 0.03 1.40 2.64 -12.29 -0.03 1.37 16 3 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 4 C -0.53 -31.29 8.37 25.60 0.21 -31.08 16 5 H 0.05 3.18 6.75 -2.91 -0.02 3.16 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -51.76 11.32 21.45 0.24 -51.52 16 8 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 9 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.53 25.57 6.98 87.66 0.61 26.18 16 13 O -0.57 -30.99 15.12 -3.05 -0.05 -31.04 16 14 N -0.71 -26.44 4.49 -449.69 -2.02 -28.46 16 15 C 0.23 7.21 2.91 43.50 0.13 7.34 16 16 H 0.13 4.22 7.56 -2.39 -0.02 4.20 16 17 C 0.47 15.16 7.65 71.23 0.54 15.70 16 18 O -0.53 -21.49 17.08 21.95 0.37 -21.11 16 19 O -0.50 -11.33 13.34 -51.42 -0.69 -12.02 16 20 C -0.22 -5.35 5.37 24.59 0.13 -5.22 16 21 C -0.09 -1.64 10.04 21.21 0.21 -1.43 16 22 C -0.14 -1.95 10.18 21.22 0.22 -1.73 16 23 C -0.19 -2.68 11.23 66.72 0.75 -1.93 16 24 S 0.09 1.84 22.31 -56.49 -1.26 0.58 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 4.03 6.07 -2.39 -0.01 4.02 16 27 H 0.04 1.83 7.56 -2.39 -0.02 1.82 16 28 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.41 13.80 7.09 -92.71 -0.66 13.14 16 30 H 0.43 6.00 9.10 -74.06 -0.67 5.33 16 31 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 33 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -75.16 306.95 2.34 -72.82 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -0.16 Total: 17.51 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 3.86 Total: 5.66 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.77 Total: -79.98 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -0.36 Total: -64.17 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.26 Total: 0.58 kcal Total: -75.16 2.34 -72.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212138.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.128 kcal (2) G-P(sol) polarization free energy of solvation -75.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds