Wall clock time and date at job start Tue Mar 31 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47422 * 2 1 4 4 C 1.50704 * 109.47001 * 240.00185 * 2 1 3 5 5 H 1.07996 * 119.99846 * 275.09996 * 4 2 1 6 6 C 1.37880 * 119.99827 * 95.10581 * 4 2 1 7 7 N 1.31517 * 119.99672 * 184.90672 * 6 4 2 8 8 Si 1.86793 * 120.00237 * 4.90760 * 6 4 2 9 9 H 1.48501 * 109.47124 * 84.82029 * 8 6 4 10 10 H 1.48505 * 109.47195 * 204.82399 * 8 6 4 11 11 H 1.48505 * 109.47125 * 324.82080 * 8 6 4 12 12 C 1.50703 * 109.47313 * 120.00398 * 2 1 3 13 13 O 1.21280 * 119.99913 * 120.00234 * 12 2 1 14 14 N 1.34776 * 119.99223 * 300.27169 * 12 2 1 15 15 C 1.46505 * 119.99502 * 179.72187 * 14 12 2 16 16 H 1.09004 * 109.47252 * 325.00590 * 15 14 12 17 17 C 1.50706 * 109.46765 * 85.00603 * 15 14 12 18 18 O 1.20822 * 119.99823 * 359.97438 * 17 15 14 19 19 O 1.34230 * 119.99694 * 180.02562 * 17 15 14 20 20 C 1.50698 * 109.47247 * 205.00167 * 15 14 12 21 21 C 1.33387 * 125.20233 * 139.72091 * 20 15 14 22 22 C 1.38420 * 114.92122 * 179.86233 * 21 20 15 23 23 C 1.33389 * 114.92244 * 0.43060 * 22 21 20 24 24 S 1.75882 * 125.20539 * 320.03182 * 20 15 14 25 25 H 1.08996 * 109.46846 * 295.07130 * 1 2 3 26 26 H 1.09003 * 109.47002 * 55.07736 * 1 2 3 27 27 H 1.08996 * 109.46873 * 175.07091 * 1 2 3 28 28 H 0.97005 * 120.00001 * 180.02562 * 7 6 4 29 29 H 0.96992 * 120.00837 * 359.73378 * 14 12 2 30 30 H 0.96704 * 116.99537 * 180.02562 * 19 17 15 31 31 H 1.08003 * 122.54019 * 0.02562 * 21 20 15 32 32 H 1.08004 * 122.53774 * 180.19684 * 22 21 20 33 33 H 1.07999 * 125.20168 * 179.75069 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1339 -1.7856 -1.2296 6 6 2.3623 0.0124 -2.3574 7 7 2.7081 -0.6127 -3.4616 8 14 2.3181 1.8793 -2.3157 9 1 3.6038 2.3930 -1.7786 10 1 2.1126 2.4005 -3.6910 11 1 1.2028 2.3288 -1.4442 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7022 -0.2532 2.4545 15 6 2.1856 -0.9474 3.6506 16 1 2.2225 -2.0197 3.4584 17 6 3.5660 -0.4511 3.9961 18 8 4.0921 0.3952 3.3129 19 8 4.2113 -0.9500 5.0621 20 6 1.2514 -0.6752 4.8014 21 6 0.8673 -1.5739 5.7091 22 6 0.0043 -1.0920 6.6782 23 6 -0.3195 0.1958 6.5523 24 16 0.4947 0.8741 5.1485 25 1 -0.3633 0.4355 0.9308 26 1 -0.3633 0.5883 -0.8426 27 1 -0.3633 -1.0238 -0.0883 28 1 2.9406 -0.1042 -4.2543 29 1 1.1445 0.5353 2.5436 30 1 5.0943 -0.6003 5.2440 31 1 1.2061 -2.5993 5.6910 32 1 -0.3807 -1.7127 7.4738 33 1 -0.9807 0.7389 7.2113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212139.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:37 Heat of formation + Delta-G solvation = -89.491159 kcal Electronic energy + Delta-G solvation = -19998.402018 eV Core-core repulsion = 16730.222200 eV Total energy + Delta-G solvation = -3268.179818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51599 -38.82261 -37.99738 -36.07621 -34.58028 -33.69422 -31.53878 -30.28132 -27.11236 -25.25391 -23.90317 -22.99931 -21.20425 -20.21581 -18.89015 -18.45442 -17.45225 -17.13535 -16.83036 -16.02465 -15.62196 -15.33180 -15.04757 -14.16331 -14.02753 -13.44248 -13.16006 -12.96808 -12.80471 -12.74688 -12.45315 -12.28471 -12.09652 -11.47586 -11.45796 -11.10114 -10.96275 -10.75391 -10.73396 -10.27897 -9.80978 -9.21983 -9.09543 -8.88722 -8.80064 -8.70109 -8.53703 -6.06114 -4.05716 0.66613 1.30052 1.72119 2.21824 2.47834 2.78268 3.28204 3.34370 3.37059 3.52428 3.80682 4.31239 4.40383 4.80968 5.12729 5.18227 5.24931 5.27433 5.33854 5.80218 5.89579 5.98869 6.15020 6.17583 6.36913 6.49398 6.50515 6.60264 6.81947 7.16981 7.51709 7.91880 7.94027 8.51609 8.97355 9.08447 9.53201 11.06894 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.005134 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.983481 B = 5452.117551 C = 5838.049545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.058 0.942 4 C -0.496 4.496 5 H 0.087 0.913 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.870 3.130 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.264 1.264 12 C 0.529 3.471 13 O -0.521 6.521 14 N -0.727 5.727 15 C 0.233 3.767 16 H 0.140 0.860 17 C 0.467 3.533 18 O -0.491 6.491 19 O -0.513 6.513 20 C -0.194 4.194 21 C -0.104 4.104 22 C -0.135 4.135 23 C -0.206 4.206 24 S 0.116 5.884 25 H 0.027 0.973 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.265 0.735 29 H 0.400 0.600 30 H 0.407 0.593 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 2.625 22.416 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.076 0.924 4 C -0.534 4.534 5 H 0.105 0.895 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.697 3.303 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.189 1.189 12 C 0.319 3.681 13 O -0.394 6.394 14 N -0.384 5.384 15 C 0.123 3.877 16 H 0.157 0.843 17 C 0.305 3.695 18 O -0.376 6.376 19 O -0.325 6.325 20 C -0.312 4.312 21 C -0.135 4.135 22 C -0.165 4.165 23 C -0.342 4.342 24 S 0.380 5.620 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.236 0.764 30 H 0.266 0.734 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.644 3.435 21.121 22.131 hybrid contribution 0.436 0.314 0.831 0.990 sum -5.209 3.749 21.953 22.871 Atomic orbital electron populations 1.21973 0.96506 1.01570 0.99235 1.19361 0.94220 0.97150 0.91593 0.92434 1.20714 1.43265 0.96153 0.93219 0.89512 1.25009 0.94484 0.98050 0.95325 1.69882 1.45791 1.35726 1.01679 0.86982 0.79220 0.86686 0.77446 1.19972 1.21186 1.18855 1.22012 0.78359 0.84300 0.83475 1.90589 1.36412 1.26232 1.86119 1.46380 1.54920 1.32984 1.04092 1.18439 0.84866 1.00817 0.83623 0.84324 1.23983 0.88725 0.79388 0.77393 1.90758 1.67256 1.30236 1.49363 1.84517 1.35237 1.65904 1.46806 1.24117 1.06621 0.98075 1.02351 1.20151 0.98296 1.00886 0.94185 1.20166 1.00249 0.95190 1.00942 1.25723 1.06993 0.99090 1.02397 1.84440 1.42347 1.11089 1.24162 0.95448 0.92448 0.92701 0.92503 0.76438 0.73403 0.83478 0.83819 0.81582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.12 37.16 0.34 -2.35 16 2 C 0.00 -0.04 2.30 -92.92 -0.21 -0.25 16 3 H 0.06 1.36 5.29 -51.93 -0.27 1.08 16 4 C -0.50 -14.37 8.36 -34.44 -0.29 -14.66 16 5 H 0.09 2.83 7.61 -52.49 -0.40 2.43 16 6 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.89 -27.72 13.96 55.43 0.77 -26.94 16 8 Si 0.87 21.39 26.99 -169.99 -4.59 16.80 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.26 -5.96 6.82 56.52 0.39 -5.57 16 12 C 0.53 11.96 6.98 -10.98 -0.08 11.88 16 13 O -0.52 -13.60 15.43 5.56 0.09 -13.51 16 14 N -0.73 -12.78 4.45 -56.06 -0.25 -13.03 16 15 C 0.23 3.52 2.91 -70.23 -0.20 3.32 16 16 H 0.14 2.12 7.56 -51.93 -0.39 1.72 16 17 C 0.47 7.43 7.65 36.01 0.28 7.70 16 18 O -0.49 -9.65 17.08 -18.75 -0.32 -9.97 16 19 O -0.51 -6.13 13.34 -39.26 -0.52 -6.65 16 20 C -0.19 -2.33 5.37 -36.00 -0.19 -2.52 16 21 C -0.10 -1.04 10.04 -41.21 -0.41 -1.45 16 22 C -0.13 -1.13 10.18 -41.21 -0.42 -1.55 16 23 C -0.21 -1.73 11.23 29.04 0.33 -1.40 16 24 S 0.12 1.22 22.31 -107.50 -2.40 -1.17 16 25 H 0.03 0.44 7.42 -51.93 -0.39 0.05 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.40 6.19 7.03 -40.82 -0.29 5.90 16 30 H 0.41 3.16 9.10 45.56 0.41 3.57 16 31 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 306.96 15.07 4.63 4.63 Total: -1.00 -36.16 306.96 -6.15 -42.31 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -2.59 Total: 6.76 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.97 Total: 0.78 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.52 Total: -39.97 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.76 Total: -30.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.59 Total: 16.80 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.40 Total: -1.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.16 -6.15 -42.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212139.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.178 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds