Wall clock time and date at job start Tue Mar 31 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99971 * 2 1 4 4 H 1.48501 * 109.46839 * 269.99722 * 3 2 1 5 5 H 1.48497 * 109.46979 * 29.99365 * 3 2 1 6 6 H 1.48494 * 109.46896 * 150.00134 * 3 2 1 7 7 C 1.37875 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99736 * 359.97438 * 7 2 1 10 10 S 1.81406 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.81400 * 103.00079 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47158 * 180.02562 * 11 10 9 13 13 N 1.28795 * 124.76011 * 90.00322 * 12 11 10 14 14 C 1.32512 * 117.12346 * 179.97438 * 13 12 11 15 15 C 1.48409 * 122.95773 * 179.97438 * 14 13 12 16 16 N 1.34066 * 126.67635 * 180.02562 * 15 14 13 17 17 N 1.28988 * 107.26481 * 179.97438 * 16 15 14 18 18 N 1.28729 * 108.95249 * 359.97438 * 17 16 15 19 19 H 0.96994 * 125.34133 * 179.97438 * 18 17 16 20 20 N 1.28877 * 109.32166 * 359.72845 * 18 17 16 21 21 C 1.34797 * 114.08393 * 359.97438 * 14 13 12 22 22 S 1.70922 * 124.75689 * 270.28758 * 12 11 10 23 23 H 0.97006 * 119.99833 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47020 * 60.00323 * 9 7 2 25 25 H 1.08992 * 109.47543 * 299.99940 * 9 7 2 26 26 H 1.09002 * 109.46870 * 59.99889 * 11 10 9 27 27 H 1.09003 * 109.46819 * 300.00338 * 11 10 9 28 28 H 1.08002 * 126.05660 * 179.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 16 2.4298 -3.8779 0.0029 11 6 1.3516 -5.3367 0.0034 12 6 2.1955 -6.5852 0.0051 13 7 2.6059 -7.1926 1.0641 14 6 3.3412 -8.2812 0.8894 15 6 3.8815 -9.0800 2.0174 16 7 4.6307 -10.1882 1.9273 17 7 4.8917 -10.5727 3.1305 18 7 4.3409 -9.7560 3.9592 19 1 4.3861 -9.8220 4.9259 20 7 3.7243 -8.8339 3.3031 21 6 3.5550 -8.5990 -0.4030 22 16 2.7480 -7.3897 -1.3980 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 0.7227 -5.3239 -0.8868 27 1 0.7220 -5.3228 0.8932 28 1 4.1249 -9.4423 -0.7643 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678509.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:21 Heat of formation + Delta-G solvation = 164.228746 kcal Electronic energy + Delta-G solvation = -16022.576261 eV Core-core repulsion = 13136.903843 eV Total energy + Delta-G solvation = -2885.672418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.64642 -39.84331 -34.63670 -33.65636 -33.18227 -31.80834 -28.69854 -28.33946 -25.59710 -24.65866 -23.29818 -22.45862 -20.18808 -19.17443 -18.21021 -17.35205 -16.56437 -15.82838 -15.58502 -15.00091 -14.61124 -14.25245 -14.18100 -13.60482 -12.87249 -12.64234 -12.51416 -12.35225 -11.94145 -11.87705 -11.58545 -11.28940 -11.17577 -10.89694 -10.74104 -10.20102 -9.78633 -9.61743 -9.48031 -8.98354 -8.69541 -8.64274 -6.78791 -6.22571 -4.26996 0.33347 0.90646 1.15374 1.48529 1.56102 2.09674 2.49128 3.12098 3.24626 3.25136 3.30999 3.36461 3.70794 3.93123 4.33350 4.40468 4.98455 5.10185 5.14923 5.19237 5.25920 5.41277 5.70090 5.86761 6.16722 7.03186 7.05902 7.54857 7.71805 7.95516 7.96200 8.74575 9.36332 10.88565 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.028172 B = 0.003327 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.650590 B = 8413.870329 C = 9002.692105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.090 3.910 10 S -0.274 6.274 11 C -0.027 4.027 12 C 0.086 3.914 13 N -0.443 5.443 14 C 0.140 3.860 15 C 0.250 3.750 16 N -0.263 5.263 17 N -0.052 5.052 18 N -0.228 5.228 19 H 0.477 0.523 20 N -0.262 5.262 21 C -0.222 4.222 22 S 0.184 5.816 23 H 0.266 0.734 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 -19.432 1.855 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.086 0.914 9 C -0.057 4.057 10 S -0.049 6.049 11 C -0.178 4.178 12 C -0.194 4.194 13 N -0.157 5.157 14 C 0.005 3.995 15 C -0.033 4.033 16 N -0.138 5.138 17 N -0.047 5.047 18 N -0.075 5.075 19 H 0.331 0.669 20 N -0.114 5.114 21 C -0.367 4.367 22 S 0.440 5.560 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.922 -19.368 1.553 20.312 hybrid contribution -0.808 0.695 1.266 1.655 sum 5.114 -18.673 2.820 19.564 Atomic orbital electron populations 1.69948 1.06121 1.27415 1.49501 1.24951 0.94986 0.99254 0.94579 0.86338 0.79752 0.82132 0.78370 1.20302 1.20955 1.19549 1.20638 0.93505 0.88571 1.52522 0.91418 1.21139 0.93679 0.90495 1.00423 1.86974 1.19712 1.00169 1.98048 1.21823 0.98395 0.90914 1.06664 1.26177 1.01944 1.00479 0.90756 1.65952 1.11627 1.06571 1.31585 1.16562 1.01250 0.93694 0.88032 1.22476 0.98442 0.93420 0.88995 1.76051 1.14410 1.10759 1.12542 1.78885 1.15493 1.16157 0.94199 1.47819 1.31944 1.14730 1.12967 0.66897 1.75224 1.17149 1.13107 1.05888 1.27126 1.08207 1.05983 0.95340 1.84111 1.44027 1.16570 1.11268 0.92442 0.94280 0.94241 0.88229 0.87412 0.79336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.69 15 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 3 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.51 -14.19 9.13 -34.44 -0.31 -14.50 15 8 H 0.07 1.88 7.71 -52.48 -0.40 1.48 15 9 C 0.09 2.25 5.70 36.01 0.21 2.46 15 10 S -0.27 -5.83 21.64 -107.50 -2.33 -8.16 15 11 C -0.03 -0.45 6.52 36.00 0.23 -0.21 15 12 C 0.09 1.32 6.62 -13.55 -0.09 1.23 15 13 N -0.44 -7.27 10.55 -8.42 -0.09 -7.36 15 14 C 0.14 2.03 6.72 -84.60 -0.57 1.46 15 15 C 0.25 3.48 8.14 -156.29 -1.27 2.21 15 16 N -0.26 -3.39 12.45 32.15 0.40 -2.99 15 17 N -0.05 -0.57 13.47 60.35 0.81 0.24 15 18 N -0.23 -2.06 7.90 60.35 0.48 -1.58 15 19 H 0.48 1.86 8.96 -340.36 -3.05 -1.19 15 20 N -0.26 -3.41 12.40 32.17 0.40 -3.01 15 21 C -0.22 -2.60 11.12 29.51 0.33 -2.28 15 22 S 0.18 2.18 23.16 -107.50 -2.49 -0.31 15 23 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 24 H 0.04 1.00 8.14 -51.92 -0.42 0.58 15 25 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.10 1.42 8.14 -51.92 -0.42 1.00 15 27 H 0.11 1.76 8.14 -51.92 -0.42 1.34 15 28 H 0.19 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -32.29 290.73 -9.00 -41.28 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: -4.70 Total: -6.00 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.57 Total: -7.90 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 2.74 Total: -39.39 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -4.82 Total: -8.47 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.29 -9.00 -41.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678509.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.513 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds