Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99971 * 2 1 4 4 H 1.48501 * 109.46839 * 269.99722 * 3 2 1 5 5 H 1.48497 * 109.46979 * 29.99365 * 3 2 1 6 6 H 1.48494 * 109.46896 * 150.00134 * 3 2 1 7 7 C 1.37875 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99736 * 359.97438 * 7 2 1 10 10 S 1.81406 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.81400 * 103.00079 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47158 * 180.02562 * 11 10 9 13 13 N 1.28795 * 124.76011 * 90.00322 * 12 11 10 14 14 C 1.32512 * 117.12346 * 179.97438 * 13 12 11 15 15 C 1.48409 * 122.95773 * 179.97438 * 14 13 12 16 16 N 1.34066 * 126.67635 * 180.02562 * 15 14 13 17 17 N 1.28988 * 107.26481 * 179.97438 * 16 15 14 18 18 N 1.28729 * 108.95249 * 359.97438 * 17 16 15 19 19 H 0.96994 * 125.34133 * 179.97438 * 18 17 16 20 20 N 1.28877 * 109.32166 * 359.72845 * 18 17 16 21 21 C 1.34797 * 114.08393 * 359.97438 * 14 13 12 22 22 S 1.70922 * 124.75689 * 270.28758 * 12 11 10 23 23 H 0.97006 * 119.99833 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47020 * 60.00323 * 9 7 2 25 25 H 1.08992 * 109.47543 * 299.99940 * 9 7 2 26 26 H 1.09002 * 109.46870 * 59.99889 * 11 10 9 27 27 H 1.09003 * 109.46819 * 300.00338 * 11 10 9 28 28 H 1.08002 * 126.05660 * 179.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 16 2.4298 -3.8779 0.0029 11 6 1.3516 -5.3367 0.0034 12 6 2.1955 -6.5852 0.0051 13 7 2.6059 -7.1926 1.0641 14 6 3.3412 -8.2812 0.8894 15 6 3.8815 -9.0800 2.0174 16 7 4.6307 -10.1882 1.9273 17 7 4.8917 -10.5727 3.1305 18 7 4.3409 -9.7560 3.9592 19 1 4.3861 -9.8220 4.9259 20 7 3.7243 -8.8339 3.3031 21 6 3.5550 -8.5990 -0.4030 22 16 2.7480 -7.3897 -1.3980 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 0.7227 -5.3239 -0.8868 27 1 0.7220 -5.3228 0.8932 28 1 4.1249 -9.4423 -0.7643 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678509.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = 141.591197 kcal Electronic energy + Delta-G solvation = -16023.557899 eV Core-core repulsion = 13136.903843 eV Total energy + Delta-G solvation = -2886.654056 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.54092 -40.91929 -35.54887 -35.27665 -34.62795 -32.89502 -30.67606 -29.57695 -26.60419 -25.56437 -25.22316 -23.63164 -21.22687 -20.06508 -19.28858 -18.57919 -18.24716 -17.29151 -16.76387 -16.60360 -15.89604 -15.56923 -15.23409 -14.84309 -14.51544 -14.41149 -14.14429 -13.58693 -13.37549 -12.84671 -12.72178 -12.65148 -12.47922 -12.29053 -12.22457 -11.89275 -11.59800 -10.88846 -10.75694 -10.72577 -10.48641 -9.75454 -8.51133 -8.31868 -6.44511 -0.69551 -0.00534 0.16153 0.40618 0.51266 1.11019 1.39048 1.42239 1.42834 1.55091 1.91855 2.03494 2.28316 2.38357 2.96913 3.03156 3.29331 3.88615 4.10869 4.18036 4.25743 4.42502 4.46274 4.77593 4.97258 4.97772 5.55305 5.58503 5.89752 6.49747 6.62196 7.04361 7.23291 8.79755 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.028172 B = 0.003327 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.650590 B = 8413.870329 C = 9002.692105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.093 3.907 10 S -0.289 6.289 11 C -0.012 4.012 12 C 0.046 3.954 13 N -0.467 5.467 14 C 0.112 3.888 15 C 0.236 3.764 16 N -0.274 5.274 17 N -0.048 5.048 18 N -0.200 5.200 19 H 0.496 0.504 20 N -0.285 5.285 21 C -0.201 4.201 22 S 0.254 5.746 23 H 0.270 0.730 24 H 0.026 0.974 25 H 0.017 0.983 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -20.479 1.254 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.079 0.921 9 C -0.054 4.054 10 S -0.063 6.063 11 C -0.162 4.162 12 C -0.232 4.232 13 N -0.183 5.183 14 C -0.023 4.023 15 C -0.047 4.047 16 N -0.148 5.148 17 N -0.043 5.043 18 N -0.051 5.051 19 H 0.355 0.645 20 N -0.138 5.138 21 C -0.345 4.345 22 S 0.510 5.490 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.036 0.964 26 H 0.140 0.860 27 H 0.121 0.879 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.983 -20.421 0.969 21.604 hybrid contribution -1.107 0.808 1.472 2.011 sum 5.877 -19.613 2.440 20.620 Atomic orbital electron populations 1.70045 1.07533 1.28550 1.49986 1.25853 0.95872 1.02838 0.93845 0.85306 0.78388 0.77712 0.78820 1.19227 1.20132 1.19302 1.20954 0.93414 0.90184 1.52965 0.92114 1.20805 0.93980 0.92021 0.98621 1.86765 1.20201 1.01276 1.98080 1.21757 0.97691 0.89114 1.07661 1.25896 1.03708 1.00937 0.92669 1.65877 1.11994 1.07444 1.33016 1.16730 1.02376 0.93956 0.89284 1.22538 0.99031 0.93884 0.89214 1.76029 1.14795 1.10662 1.13325 1.78814 1.15310 1.16102 0.94060 1.47827 1.30197 1.13264 1.13803 0.64519 1.75166 1.18158 1.14340 1.06114 1.27570 1.06389 1.06021 0.94539 1.83847 1.42064 1.14779 1.08354 0.92060 0.95559 0.96426 0.86013 0.87888 0.76441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.30 13.29 21.45 0.28 -53.01 15 2 C 0.02 0.95 5.46 84.65 0.46 1.41 15 3 Si 0.97 43.29 29.54 68.60 2.03 45.31 15 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 7 C -0.54 -30.25 9.13 25.60 0.23 -30.02 15 8 H 0.06 3.43 7.71 -2.91 -0.02 3.41 15 9 C 0.09 4.83 5.70 71.24 0.41 5.24 15 10 S -0.29 -12.41 21.64 -56.49 -1.22 -13.63 15 11 C -0.01 -0.38 6.52 71.23 0.46 0.09 15 12 C 0.05 1.37 6.62 88.55 0.59 1.96 15 13 N -0.47 -15.08 10.55 -180.54 -1.90 -16.98 15 14 C 0.11 3.09 6.72 40.96 0.28 3.36 15 15 C 0.24 6.34 8.14 137.35 1.12 7.45 15 16 N -0.27 -6.63 12.45 -52.20 -0.65 -7.28 15 17 N -0.05 -0.97 13.47 37.02 0.50 -0.47 15 18 N -0.20 -3.31 7.90 37.02 0.29 -3.02 15 19 H 0.50 3.05 8.96 -347.54 -3.12 -0.07 15 20 N -0.29 -7.18 12.40 -52.14 -0.65 -7.83 15 21 C -0.20 -4.19 11.12 67.03 0.75 -3.44 15 22 S 0.25 5.37 23.16 -56.49 -1.31 4.07 15 23 H 0.27 14.58 8.31 -92.70 -0.77 13.81 15 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 15 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 26 H 0.12 3.37 8.14 -2.39 -0.02 3.35 15 27 H 0.10 3.43 8.14 -2.39 -0.02 3.41 15 28 H 0.22 3.13 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -70.06 290.73 -0.23 -70.28 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -1.89 Total: -3.49 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.29 Total: -13.95 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.13 Total: -88.59 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -2.53 Total: -9.57 kcal Total: -70.06 -0.23 -70.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678509.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.876 kcal (2) G-P(sol) polarization free energy of solvation -70.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds