Wall clock time and date at job start Tue Mar 31 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00151 * 2 1 4 4 H 1.48501 * 109.47297 * 270.00002 * 3 2 1 5 5 H 1.48501 * 109.47144 * 29.99520 * 3 2 1 6 6 H 1.48492 * 109.47469 * 149.99711 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47090 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47513 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99694 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00086 * 179.97438 * 12 11 10 15 15 C 1.38615 * 119.99852 * 179.97438 * 14 12 11 16 16 S 1.70441 * 124.66062 * 359.75061 * 15 14 12 17 17 C 1.75460 * 92.54204 * 179.97438 * 16 15 14 18 18 C 1.32512 * 110.83244 * 359.97438 * 17 16 15 19 19 C 1.37179 * 124.66137 * 179.45154 * 15 14 12 20 20 C 1.46436 * 123.61091 * 359.97438 * 19 15 14 21 21 O 1.21640 * 120.00238 * 0.02562 * 20 19 15 22 22 O 1.34890 * 119.99875 * 180.02562 * 20 19 15 23 23 H 0.96993 * 120.00319 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46987 * 59.99452 * 9 7 2 25 25 H 1.08993 * 109.47092 * 299.99758 * 9 7 2 26 26 H 1.08994 * 109.47627 * 60.00278 * 10 9 7 27 27 H 1.09001 * 109.47155 * 299.99730 * 10 9 7 28 28 H 1.08999 * 109.47241 * 59.99445 * 11 10 9 29 29 H 1.09005 * 109.46517 * 300.00254 * 11 10 9 30 30 H 0.96991 * 120.00367 * 359.72573 * 14 12 11 31 31 H 1.07994 * 124.58450 * 179.97438 * 17 16 15 32 32 H 1.08000 * 123.40889 * 180.02562 * 18 17 16 33 33 H 0.96692 * 116.99913 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4595 -6.1326 0.0005 13 8 3.6519 -5.9109 0.0009 14 7 2.0103 -7.4032 0.0006 15 6 2.9110 -8.4568 0.0007 16 16 4.6065 -8.2825 -0.0055 17 6 4.8631 -10.0183 -0.0005 18 6 3.7069 -10.6656 0.0060 19 6 2.5604 -9.7830 0.0116 20 6 1.1742 -10.2549 0.0252 21 8 0.2590 -9.4537 0.0269 22 8 0.9123 -11.5781 0.0360 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8719 -3.6043 -0.8895 28 1 0.8539 -5.0446 -0.8903 29 1 0.8533 -5.0450 0.8897 30 1 1.0567 -7.5805 0.0043 31 1 5.8323 -10.4946 -0.0025 32 1 3.6284 -11.7427 0.0104 33 1 -0.0180 -11.8414 0.0444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609027.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:28 Heat of formation + Delta-G solvation = -114.994604 kcal Electronic energy + Delta-G solvation = -18932.432410 eV Core-core repulsion = 15663.146680 eV Total energy + Delta-G solvation = -3269.285730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80108 -39.97037 -37.47883 -36.24770 -34.75876 -34.35335 -32.16720 -29.55000 -27.94728 -25.75766 -23.87315 -22.15342 -21.56400 -20.60739 -19.78069 -18.64234 -17.77796 -17.27446 -16.26868 -16.11861 -15.86153 -15.65806 -15.30384 -14.54504 -14.43533 -14.02239 -13.95923 -13.31689 -12.99853 -12.45946 -12.34970 -11.91884 -11.80433 -11.52376 -11.32561 -11.06380 -10.86440 -10.85631 -10.72078 -10.55707 -9.90174 -9.77012 -9.40375 -9.10438 -8.68482 -8.36731 -8.35496 -6.01156 -4.03163 0.46229 1.05303 1.64205 1.83280 2.40215 2.77903 2.95266 3.00962 3.32766 3.38889 3.43144 4.46107 4.65398 4.79143 4.79737 5.23994 5.35031 5.48067 5.51329 5.54324 5.76187 5.94852 6.04582 6.08470 6.23920 6.58548 6.78491 7.01950 7.04421 7.64729 7.66706 7.76215 7.80065 7.98476 8.41092 9.03686 9.61145 11.10312 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.031749 B = 0.003185 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.716921 B = 8789.959776 C = 9645.896354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.133 4.133 12 C 0.504 3.496 13 O -0.496 6.496 14 N -0.631 5.631 15 C 0.099 3.901 16 S 0.316 5.684 17 C -0.303 4.303 18 C -0.064 4.064 19 C -0.247 4.247 20 C 0.557 3.443 21 O -0.536 6.536 22 O -0.510 6.510 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.432 0.568 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -24.125 0.014 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.173 4.173 12 C 0.294 3.706 13 O -0.370 6.370 14 N -0.280 5.280 15 C -0.123 4.123 16 S 0.576 5.424 17 C -0.438 4.438 18 C -0.092 4.092 19 C -0.265 4.265 20 C 0.403 3.597 21 O -0.428 6.428 22 O -0.321 6.321 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.276 0.724 31 H 0.186 0.814 32 H 0.168 0.832 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 6.780 -22.214 0.006 23.226 hybrid contribution -1.842 -0.760 0.005 1.993 sum 4.937 -22.975 0.011 23.499 Atomic orbital electron populations 1.69955 1.06057 1.26650 1.50942 1.25021 0.94860 0.99306 0.95299 0.86578 0.79881 0.83353 0.78122 1.20655 1.21248 1.19810 1.21237 0.93179 0.90906 1.50493 0.92511 1.19133 0.93913 0.91300 0.97354 1.21519 0.98819 0.91065 1.02035 1.21918 0.97739 0.92749 1.04901 1.22067 0.91161 0.83363 0.74052 1.90601 1.17026 1.82821 1.46576 1.43796 1.11316 1.03678 1.69183 1.22386 0.99797 0.90338 0.99796 1.84543 0.90505 0.99520 1.67797 1.25967 1.02600 1.00951 1.14318 1.20796 0.89311 1.00092 0.98964 1.18812 0.91891 0.90366 1.25408 1.19867 0.88484 0.79902 0.71404 1.90781 1.47203 1.55670 1.49178 1.84594 1.35845 1.25631 1.86067 0.92993 0.96448 0.96429 0.92323 0.92332 0.88257 0.88270 0.72380 0.81435 0.83231 0.72964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -1.96 4.44 -26.73 -0.12 -2.08 16 11 C -0.13 -2.10 5.70 -27.88 -0.16 -2.26 16 12 C 0.50 7.74 7.79 -10.99 -0.09 7.66 16 13 O -0.50 -8.62 13.40 5.56 0.07 -8.54 16 14 N -0.63 -8.59 5.33 -11.61 -0.06 -8.65 16 15 C 0.10 1.29 6.98 -14.87 -0.10 1.19 16 16 S 0.32 3.70 19.96 -107.50 -2.15 1.56 16 17 C -0.30 -2.77 11.09 28.82 0.32 -2.45 16 18 C -0.06 -0.62 10.13 -38.95 -0.39 -1.01 16 19 C -0.25 -2.93 6.00 -104.44 -0.63 -3.55 16 20 C 0.56 6.41 8.28 34.03 0.28 6.69 16 21 O -0.54 -7.21 15.23 -19.37 -0.30 -7.51 16 22 O -0.51 -4.16 13.16 -41.01 -0.54 -4.70 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 27 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 28 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.43 5.56 6.17 -40.82 -0.25 5.31 16 31 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.41 1.50 9.11 45.56 0.42 1.92 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -33.23 307.40 -6.81 -40.04 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.76 Total: 1.48 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.44 Total: -8.98 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.67 Total: -34.70 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.76 Total: -20.75 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.15 Total: 1.56 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.23 -6.81 -40.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609027.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.953 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds