Wall clock time and date at job start Tue Mar 31 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34080 * 125.81662 * 2 1 4 4 H 0.97001 * 125.35456 * 359.96801 * 3 2 1 5 5 C 1.37889 * 109.29671 * 179.83800 * 3 2 1 6 6 C 1.46668 * 125.81131 * 180.17840 * 5 3 2 7 7 O 1.21605 * 120.00278 * 180.29312 * 6 5 3 8 8 O 1.34875 * 120.00247 * 0.29540 * 6 5 3 9 9 C 1.36334 * 108.37713 * 0.42764 * 5 3 2 10 10 C 1.38644 * 125.81674 * 180.31073 * 2 1 3 11 11 C 1.46626 * 126.51121 * 0.02562 * 10 2 1 12 12 O 1.21319 * 119.99684 * 359.97438 * 11 10 2 13 13 C 1.50699 * 120.00236 * 180.02562 * 11 10 2 14 14 S 1.81403 * 109.46981 * 180.02562 * 13 11 10 15 15 C 1.81402 * 102.99681 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46848 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00518 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99828 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00142 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.46991 * 90.00279 * 20 18 16 22 22 H 1.48495 * 109.47118 * 210.00682 * 20 18 16 23 23 H 1.48503 * 109.46656 * 330.00261 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68946 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69046 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69027 * 1 2 3 27 27 H 0.96693 * 116.99681 * 179.97438 * 8 6 5 28 28 H 1.07996 * 126.51271 * 179.72263 * 9 5 3 29 29 H 1.09001 * 109.47160 * 299.99726 * 13 11 10 30 30 H 1.08995 * 109.47322 * 59.99638 * 13 11 10 31 31 H 1.08995 * 109.47467 * 299.99634 * 15 14 13 32 32 H 1.08999 * 109.47271 * 59.99889 * 15 14 13 33 33 H 0.97002 * 119.99983 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2917 1.0872 0.0000 4 1 1.9786 2.0053 -0.0004 5 6 3.6136 0.6952 0.0037 6 6 4.7746 1.5914 0.0086 7 8 5.8995 1.1295 0.0061 8 8 4.5946 2.9281 0.0158 9 6 3.6578 -0.6674 -0.0036 10 6 2.3184 -1.1242 -0.0061 11 6 1.8733 -2.5213 -0.0142 12 8 0.6880 -2.7802 -0.0156 13 6 2.8880 -3.6354 -0.0196 14 16 2.0306 -5.2340 -0.0299 15 6 3.3955 -6.4289 -0.0361 16 6 2.8375 -7.8288 -0.0444 17 1 1.7687 -7.9842 -0.0462 18 6 3.6914 -8.9113 -0.0508 19 7 4.9929 -8.7222 -0.0491 20 14 2.9998 -10.6465 -0.0617 21 1 2.8172 -11.0977 -1.4646 22 1 3.9425 -11.5595 0.6332 23 1 1.6899 -10.6616 0.6377 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 5.3899 3.4781 0.0192 28 1 4.5462 -1.2815 -0.0073 29 1 3.5132 -3.5532 -0.9087 30 1 3.5119 -3.5630 0.8712 31 1 4.0080 -6.2764 -0.9248 32 1 4.0067 -6.2871 0.8551 33 1 5.5936 -9.4837 -0.0532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599959926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:20 Heat of formation + Delta-G solvation = -120.471627 kcal Electronic energy + Delta-G solvation = -18620.646310 eV Core-core repulsion = 15351.123079 eV Total energy + Delta-G solvation = -3269.523232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.82085 -40.83380 -39.75392 -37.17729 -35.27260 -33.32313 -32.74300 -30.89781 -30.51676 -28.32970 -25.36389 -24.91652 -23.11258 -21.56355 -20.30295 -19.33532 -18.61565 -18.57024 -17.31665 -17.03221 -16.71112 -16.42011 -16.35031 -16.05360 -15.42211 -15.25566 -14.65419 -14.50863 -14.39601 -14.35663 -14.13540 -13.77927 -13.49298 -13.37917 -12.84170 -12.71911 -12.68558 -12.55750 -12.01045 -12.00478 -11.59533 -10.81289 -10.73034 -10.63863 -10.35053 -9.47075 -8.46192 -8.31775 -6.44517 0.06116 0.27488 0.87097 1.41356 1.42794 1.55318 1.66524 1.75581 2.02085 2.07842 2.13343 2.38616 3.02841 3.08571 3.71347 3.86316 4.07551 4.17117 4.22434 4.38456 4.43896 4.67133 4.70572 4.86529 4.96714 4.97274 5.16425 5.30362 5.44986 5.56590 5.58984 5.91159 6.22091 6.58125 6.62571 6.86029 7.23176 8.80415 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.003204 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.333218 B = 8737.918882 C = 9754.502490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.165 3.835 3 N -0.495 5.495 4 H 0.445 0.555 5 C -0.059 4.059 6 C 0.565 3.435 7 O -0.539 6.539 8 O -0.506 6.506 9 C -0.051 4.051 10 C -0.284 4.284 11 C 0.448 3.552 12 O -0.470 6.470 13 C -0.138 4.138 14 S -0.282 6.282 15 C 0.085 3.915 16 C -0.537 4.537 17 H 0.060 0.940 18 C 0.015 3.985 19 N -0.924 5.924 20 Si 0.976 3.024 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.266 1.266 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.439 0.561 28 H 0.161 0.839 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 26.986 0.143 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.037 3.963 3 N -0.092 5.092 4 H 0.288 0.712 5 C -0.167 4.167 6 C 0.410 3.590 7 O -0.429 6.429 8 O -0.321 6.321 9 C -0.076 4.076 10 C -0.292 4.292 11 C 0.327 3.673 12 O -0.347 6.347 13 C -0.286 4.286 14 S -0.056 6.056 15 C -0.062 4.062 16 C -0.575 4.575 17 H 0.078 0.922 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.799 3.201 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.191 1.191 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.302 0.698 28 H 0.179 0.821 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.926 26.436 0.138 27.093 hybrid contribution 2.132 -0.140 -0.002 2.137 sum -3.794 26.296 0.136 26.569 Atomic orbital electron populations 1.20823 0.84202 1.05690 1.05221 1.21433 0.95116 0.84841 0.94875 1.41592 1.04154 1.09766 1.53673 0.71247 1.18757 0.82770 0.92490 1.22642 1.19325 0.86591 0.81309 0.71745 1.90997 1.25583 1.77896 1.48449 1.84490 1.45122 1.17109 1.85424 1.21467 0.97237 0.92363 0.96525 1.19711 0.93859 0.92996 1.22590 1.20814 0.88147 0.87705 0.70632 1.90512 1.19642 1.86098 1.38490 1.23882 1.02722 0.94185 1.07817 1.86967 1.19719 1.00766 1.98108 1.20810 0.92449 0.94737 0.98225 1.20975 0.93549 0.90132 1.52894 0.92179 1.25900 0.94988 1.03890 0.93786 1.70053 1.03202 1.32976 1.50089 0.85277 0.78399 0.77579 0.78803 1.19366 1.19897 1.19076 0.88278 0.89582 0.87457 0.69778 0.82101 0.86239 0.86215 0.96393 0.96387 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.88 71.24 0.70 -0.63 16 2 C 0.16 2.84 7.21 42.31 0.31 3.15 16 3 N -0.49 -6.27 6.00 -171.53 -1.03 -7.30 16 4 H 0.44 2.35 8.96 -92.71 -0.83 1.52 16 5 C -0.06 -1.07 7.02 39.95 0.28 -0.79 16 6 C 0.56 9.88 8.31 70.02 0.58 10.46 16 7 O -0.54 -13.44 17.64 19.49 0.34 -13.10 16 8 O -0.51 -4.48 13.44 -57.89 -0.78 -5.26 16 9 C -0.05 -1.14 10.08 22.64 0.23 -0.91 16 10 C -0.28 -6.82 6.11 -20.18 -0.12 -6.95 16 11 C 0.45 14.06 7.15 27.88 0.20 14.26 16 12 O -0.47 -17.01 14.31 -3.15 -0.05 -17.05 16 13 C -0.14 -4.77 5.92 71.24 0.42 -4.35 16 14 S -0.28 -13.23 20.79 -56.49 -1.17 -14.40 16 15 C 0.09 4.67 5.70 71.24 0.41 5.08 16 16 C -0.54 -31.66 9.13 25.60 0.23 -31.43 16 17 H 0.06 3.56 7.71 -2.91 -0.02 3.53 16 18 C 0.02 0.87 5.46 84.66 0.46 1.33 16 19 N -0.92 -55.16 13.29 21.45 0.28 -54.88 16 20 Si 0.98 44.65 29.54 68.60 2.03 46.67 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 25 H 0.09 1.62 6.46 -2.39 -0.02 1.61 16 26 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.44 0.17 9.11 -74.06 -0.67 -0.51 16 28 H 0.16 3.56 8.05 -2.91 -0.02 3.54 16 29 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -77.47 315.76 2.99 -74.48 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -0.33 Total: 1.60 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 3.70 Total: -10.77 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.74 Total: -62.17 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.48 Total: -35.41 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -13.23 SS G_CDS: -1.17 Total: -14.40 kcal Total: -77.47 2.99 -74.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599959926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.993 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds