Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33473 * 123.53978 * 2 1 4 4 N 1.39725 * 124.73690 * 359.97438 * 3 2 1 5 5 C 1.34774 * 119.99926 * 179.72590 * 4 3 2 6 6 O 1.21306 * 120.00090 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00164 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.46456 * 299.99542 * 7 5 4 9 9 C 1.52997 * 109.47238 * 59.99708 * 7 5 4 10 10 C 1.50697 * 109.47178 * 180.02562 * 7 5 4 11 11 H 1.07998 * 120.00039 * 359.97438 * 10 7 5 12 12 C 1.37880 * 119.99815 * 179.97438 * 10 7 5 13 13 N 1.31508 * 119.99915 * 359.97438 * 12 10 7 14 14 Si 1.86805 * 119.99777 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47155 * 89.99872 * 14 12 10 16 16 H 1.48499 * 109.47102 * 210.00327 * 14 12 10 17 17 H 1.48499 * 109.46909 * 330.00049 * 14 12 10 18 18 S 1.75494 * 110.51982 * 179.73783 * 3 2 1 19 19 C 1.70423 * 92.50386 * 0.26196 * 18 3 2 20 20 C 1.36022 * 110.94517 * 359.97438 * 19 18 3 21 21 C 1.47014 * 123.44237 * 179.97438 * 20 19 18 22 22 O 1.21563 * 119.99931 * 179.97438 * 21 20 19 23 23 O 1.34813 * 120.00219 * 359.97438 * 21 20 19 24 24 H 1.08993 * 109.47026 * 90.00350 * 1 2 3 25 25 H 1.09003 * 109.47136 * 210.00296 * 1 2 3 26 26 H 1.08999 * 109.46918 * 329.99981 * 1 2 3 27 27 H 0.97005 * 120.00279 * 359.73166 * 4 3 2 28 28 H 1.09002 * 109.47153 * 180.02562 * 9 7 5 29 29 H 1.09001 * 109.46832 * 60.00314 * 9 7 5 30 30 H 1.09004 * 109.47261 * 300.00295 * 9 7 5 31 31 H 0.97001 * 119.99839 * 180.02562 * 13 12 10 32 32 H 1.07998 * 124.52648 * 180.02562 * 19 18 3 33 33 H 0.96699 * 116.99829 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2445 1.1125 0.0000 4 7 1.7273 2.4105 -0.0005 5 6 2.5622 3.4685 0.0051 6 8 3.7626 3.2939 0.0102 7 6 2.0044 4.8686 0.0052 8 1 1.3967 5.0175 -0.8873 9 6 1.1400 5.0732 1.2508 10 6 3.1384 5.8611 0.0114 11 1 4.1607 5.5129 0.0154 12 6 2.8707 7.2136 0.0120 13 7 1.6258 7.6375 0.0066 14 14 4.2764 8.4439 0.0204 15 1 4.6556 8.7718 -1.3774 16 1 3.8470 9.6813 0.7202 17 1 5.4440 7.8565 0.7252 18 16 3.9543 0.7171 0.0075 19 6 3.6433 -0.9585 0.0028 20 6 2.3055 -1.2047 -0.0036 21 6 1.7308 -2.5578 -0.0094 22 8 0.5242 -2.7057 -0.0145 23 8 2.5419 -3.6347 -0.0090 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.7674 2.5502 -0.0048 28 1 0.7363 6.0857 1.2506 29 1 1.7479 4.9243 2.1433 30 1 0.3198 4.3553 1.2459 31 1 1.4375 8.5891 0.0066 32 1 4.4063 -1.7227 0.0054 33 1 2.1177 -4.5037 -0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600001239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -106.370076 kcal Electronic energy + Delta-G solvation = -19549.939107 eV Core-core repulsion = 16281.027364 eV Total energy + Delta-G solvation = -3268.911742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29185 -39.58079 -37.48692 -36.03973 -34.10358 -33.98431 -30.97988 -30.18919 -27.19125 -25.29299 -24.80682 -23.27208 -21.47995 -20.28432 -19.13353 -18.04805 -17.37100 -16.32886 -16.26716 -16.12962 -15.70949 -15.06007 -14.78974 -14.63900 -13.64250 -13.55395 -13.26598 -12.95777 -12.71089 -12.54185 -12.09453 -11.89449 -11.74722 -11.59966 -11.16739 -10.91116 -10.84629 -10.72431 -10.56032 -10.41167 -10.31742 -10.07858 -9.15467 -8.97031 -8.49937 -8.26005 -7.75297 -6.16254 -4.20996 0.81377 1.48285 1.79306 2.15263 2.96337 3.04836 3.26925 3.33295 3.38728 3.41979 3.58557 4.37024 4.86539 5.17628 5.27210 5.38387 5.43414 5.65675 5.78615 5.85668 5.96062 6.18081 6.31792 6.43773 6.55742 6.62066 6.66613 6.74384 7.25801 7.53704 7.69135 7.86920 7.90797 8.12265 8.66616 8.87802 9.45356 10.91345 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.038710 B = 0.003991 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.151151 B = 7014.069410 C = 7646.635628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.133 4.133 3 C 0.031 3.969 4 N -0.646 5.646 5 C 0.513 3.487 6 O -0.511 6.511 7 C 0.036 3.964 8 H 0.060 0.940 9 C -0.136 4.136 10 C -0.508 4.508 11 H 0.077 0.923 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.903 3.097 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 S 0.322 5.678 19 C -0.251 4.251 20 C -0.132 4.132 21 C 0.548 3.452 22 O -0.516 6.516 23 O -0.516 6.516 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.416 0.584 28 H 0.098 0.902 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.173 0.827 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 -16.448 0.285 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C -0.183 4.183 4 N -0.292 5.292 5 C 0.305 3.695 6 O -0.386 6.386 7 C 0.015 3.985 8 H 0.078 0.922 9 C -0.194 4.194 10 C -0.546 4.546 11 H 0.095 0.905 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.730 3.270 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.196 1.196 18 S 0.587 5.413 19 C -0.390 4.390 20 C -0.149 4.149 21 C 0.391 3.609 22 O -0.406 6.406 23 O -0.327 6.327 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.254 0.746 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.190 0.810 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.445 -15.031 0.301 15.103 hybrid contribution -1.456 -0.842 -0.028 1.682 sum -0.012 -15.872 0.273 15.875 Atomic orbital electron populations 1.20451 0.88889 1.03119 1.02394 1.19193 0.96943 0.88441 1.10014 1.21915 0.99095 0.88776 1.08518 1.43703 1.11502 1.01463 1.72577 1.22689 0.86569 0.87885 0.72401 1.90445 1.15744 1.84527 1.47881 1.18912 0.97539 0.84571 0.97449 0.92224 1.21802 0.96896 1.03682 0.97029 1.21077 0.92811 0.89729 1.50975 0.90526 1.24943 0.95963 0.98404 0.94727 1.69853 1.17885 1.15038 1.50490 0.86401 0.82177 0.80132 0.78245 1.20556 1.21203 1.19642 1.84447 0.99162 0.90890 1.66806 1.26482 0.99687 1.06767 1.06098 1.18565 0.92216 0.89728 1.14396 1.20264 0.84071 0.84729 0.71818 1.90842 1.15864 1.86941 1.46948 1.84594 1.43945 1.17970 1.86214 0.91516 0.89551 0.92313 0.74608 0.88336 0.94622 0.96750 0.92718 0.80959 0.73168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.25 36.01 0.33 -0.85 16 2 C -0.13 -1.99 6.03 -103.81 -0.63 -2.62 16 3 C 0.03 0.51 7.06 -15.61 -0.11 0.40 16 4 N -0.65 -11.03 5.28 -10.98 -0.06 -11.09 16 5 C 0.51 10.77 7.11 -10.98 -0.08 10.70 16 6 O -0.51 -11.74 12.93 5.53 0.07 -11.67 16 7 C 0.04 0.84 2.64 -92.92 -0.24 0.60 16 8 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 9 C -0.14 -2.92 8.87 37.16 0.33 -2.59 16 10 C -0.51 -13.52 8.37 -34.44 -0.29 -13.80 16 11 H 0.08 2.14 6.75 -52.49 -0.35 1.78 16 12 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 13 N -0.89 -23.96 11.32 55.43 0.63 -23.33 16 14 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 S 0.32 4.88 20.07 -107.50 -2.16 2.73 16 19 C -0.25 -3.24 10.54 29.94 0.32 -2.92 16 20 C -0.13 -1.86 5.98 -104.66 -0.63 -2.49 16 21 C 0.55 7.15 8.30 34.29 0.28 7.43 16 22 O -0.52 -7.69 15.01 -19.31 -0.29 -7.98 16 23 O -0.52 -4.93 13.08 -40.80 -0.53 -5.46 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.09 1.19 6.05 -51.93 -0.31 0.87 16 26 H 0.06 0.69 7.15 -51.93 -0.37 0.32 16 27 H 0.42 6.08 6.92 -40.82 -0.28 5.80 16 28 H 0.10 2.35 6.07 -51.93 -0.32 2.03 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 31 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 32 H 0.17 1.78 8.01 -52.49 -0.42 1.36 16 33 H 0.41 1.93 9.11 45.56 0.42 2.35 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -30.48 298.38 -6.11 -36.59 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -2.44 Total: 4.47 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -0.81 Total: -4.63 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.57 Total: -34.41 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.75 Total: -25.11 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -2.16 Total: 2.73 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.48 -6.11 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600001239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.778 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds