Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33473 * 123.53978 * 2 1 4 4 N 1.39725 * 124.73690 * 359.97438 * 3 2 1 5 5 C 1.34774 * 119.99926 * 179.72590 * 4 3 2 6 6 O 1.21306 * 120.00090 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00164 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.46456 * 299.99542 * 7 5 4 9 9 C 1.52997 * 109.47238 * 59.99708 * 7 5 4 10 10 C 1.50697 * 109.47178 * 180.02562 * 7 5 4 11 11 H 1.07998 * 120.00039 * 359.97438 * 10 7 5 12 12 C 1.37880 * 119.99815 * 179.97438 * 10 7 5 13 13 N 1.31508 * 119.99915 * 359.97438 * 12 10 7 14 14 Si 1.86805 * 119.99777 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47155 * 89.99872 * 14 12 10 16 16 H 1.48499 * 109.47102 * 210.00327 * 14 12 10 17 17 H 1.48499 * 109.46909 * 330.00049 * 14 12 10 18 18 S 1.75494 * 110.51982 * 179.73783 * 3 2 1 19 19 C 1.70423 * 92.50386 * 0.26196 * 18 3 2 20 20 C 1.36022 * 110.94517 * 359.97438 * 19 18 3 21 21 C 1.47014 * 123.44237 * 179.97438 * 20 19 18 22 22 O 1.21563 * 119.99931 * 179.97438 * 21 20 19 23 23 O 1.34813 * 120.00219 * 359.97438 * 21 20 19 24 24 H 1.08993 * 109.47026 * 90.00350 * 1 2 3 25 25 H 1.09003 * 109.47136 * 210.00296 * 1 2 3 26 26 H 1.08999 * 109.46918 * 329.99981 * 1 2 3 27 27 H 0.97005 * 120.00279 * 359.73166 * 4 3 2 28 28 H 1.09002 * 109.47153 * 180.02562 * 9 7 5 29 29 H 1.09001 * 109.46832 * 60.00314 * 9 7 5 30 30 H 1.09004 * 109.47261 * 300.00295 * 9 7 5 31 31 H 0.97001 * 119.99839 * 180.02562 * 13 12 10 32 32 H 1.07998 * 124.52648 * 180.02562 * 19 18 3 33 33 H 0.96699 * 116.99829 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2445 1.1125 0.0000 4 7 1.7273 2.4105 -0.0005 5 6 2.5622 3.4685 0.0051 6 8 3.7626 3.2939 0.0102 7 6 2.0044 4.8686 0.0052 8 1 1.3967 5.0175 -0.8873 9 6 1.1400 5.0732 1.2508 10 6 3.1384 5.8611 0.0114 11 1 4.1607 5.5129 0.0154 12 6 2.8707 7.2136 0.0120 13 7 1.6258 7.6375 0.0066 14 14 4.2764 8.4439 0.0204 15 1 4.6556 8.7718 -1.3774 16 1 3.8470 9.6813 0.7202 17 1 5.4440 7.8565 0.7252 18 16 3.9543 0.7171 0.0075 19 6 3.6433 -0.9585 0.0028 20 6 2.3055 -1.2047 -0.0036 21 6 1.7308 -2.5578 -0.0094 22 8 0.5242 -2.7057 -0.0145 23 8 2.5419 -3.6347 -0.0090 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.7674 2.5502 -0.0048 28 1 0.7363 6.0857 1.2506 29 1 1.7479 4.9243 2.1433 30 1 0.3198 4.3553 1.2459 31 1 1.4375 8.5891 0.0066 32 1 4.4063 -1.7227 0.0054 33 1 2.1177 -4.5037 -0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600001239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -126.668436 kcal Electronic energy + Delta-G solvation = -19550.819310 eV Core-core repulsion = 16281.027364 eV Total energy + Delta-G solvation = -3269.791945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38372 -40.99325 -38.68483 -36.96882 -35.87793 -35.48972 -32.69565 -31.48537 -28.39942 -27.22285 -25.86961 -24.85830 -22.69057 -21.76152 -20.37361 -19.02600 -18.73873 -18.18374 -17.68128 -17.25499 -16.72027 -16.59883 -16.29396 -16.21073 -15.14296 -14.80654 -14.48070 -14.43631 -14.04782 -13.66934 -13.60075 -13.14121 -12.99912 -12.92911 -12.73444 -12.63531 -12.53549 -12.26738 -12.05989 -11.86833 -11.84268 -11.39738 -11.08317 -10.66068 -10.41852 -9.42929 -9.00389 -8.16850 -6.27461 -0.27444 0.31687 0.60382 1.02675 1.42694 1.44425 1.54872 1.74485 1.88029 2.10908 2.34903 2.48378 3.14276 3.81607 4.09897 4.25041 4.31706 4.46604 4.63346 4.70272 4.78617 4.87366 4.88504 4.95781 5.06384 5.34789 5.37900 5.44698 5.65411 5.71971 5.87573 6.12227 6.38977 6.80646 7.03908 7.10357 7.41563 8.89127 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.038710 B = 0.003991 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.151151 B = 7014.069410 C = 7646.635628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.120 4.120 3 C -0.001 4.001 4 N -0.632 5.632 5 C 0.517 3.483 6 O -0.539 6.539 7 C 0.032 3.968 8 H 0.050 0.950 9 C -0.125 4.125 10 C -0.529 4.529 11 H 0.056 0.944 12 C 0.022 3.978 13 N -0.910 5.910 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.278 1.278 17 H -0.276 1.276 18 S 0.295 5.705 19 C -0.218 4.218 20 C -0.154 4.154 21 C 0.555 3.445 22 O -0.538 6.538 23 O -0.504 6.504 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.426 0.574 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.203 0.797 33 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 -18.117 0.372 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C -0.214 4.214 4 N -0.279 5.279 5 C 0.307 3.693 6 O -0.417 6.417 7 C 0.011 3.989 8 H 0.068 0.932 9 C -0.183 4.183 10 C -0.568 4.568 11 H 0.075 0.925 12 C -0.178 4.178 13 N -0.549 5.549 14 Si 0.781 3.219 15 H -0.201 1.201 16 H -0.203 1.203 17 H -0.201 1.201 18 S 0.560 5.440 19 C -0.356 4.356 20 C -0.170 4.170 21 C 0.399 3.601 22 O -0.431 6.431 23 O -0.318 6.318 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.266 0.734 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 1.362 -16.756 0.387 16.815 hybrid contribution -1.438 -0.517 -0.070 1.530 sum -0.077 -17.273 0.317 17.276 Atomic orbital electron populations 1.20508 0.87797 1.03583 1.03007 1.19512 0.97849 0.88419 1.07568 1.22002 0.99582 0.88353 1.11424 1.43221 1.11503 1.01264 1.71907 1.22092 0.86399 0.87999 0.72778 1.90436 1.16703 1.85140 1.49392 1.18801 0.96685 0.85716 0.97699 0.93215 1.21624 0.97528 1.03328 0.95793 1.21255 0.92992 0.91033 1.51482 0.92544 1.25565 0.97977 0.99729 0.94485 1.69936 1.18927 1.15372 1.50678 0.85587 0.79625 0.78373 0.78279 1.20129 1.20310 1.20078 1.84564 0.99377 0.92719 1.67373 1.26674 0.99966 1.05780 1.03209 1.18770 0.92582 0.90391 1.15259 1.20001 0.83763 0.85020 0.71338 1.90842 1.16781 1.87322 1.48141 1.84527 1.43319 1.18630 1.85358 0.90752 0.89879 0.91039 0.73376 0.90673 0.95412 0.92965 0.92544 0.78003 0.70462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.22 9.25 71.24 0.66 -1.56 16 2 C -0.12 -3.39 6.03 -19.34 -0.12 -3.51 16 3 C 0.00 -0.03 7.06 82.35 0.58 0.55 16 4 N -0.63 -21.16 5.28 -307.05 -1.62 -22.78 16 5 C 0.52 21.85 7.11 87.66 0.62 22.47 16 6 O -0.54 -25.25 12.93 -3.11 -0.04 -25.29 16 7 C 0.03 1.51 2.64 -12.29 -0.03 1.47 16 8 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 9 C -0.12 -5.33 8.87 71.98 0.64 -4.69 16 10 C -0.53 -28.77 8.37 25.60 0.21 -28.55 16 11 H 0.06 3.24 6.75 -2.91 -0.02 3.22 16 12 C 0.02 1.18 5.30 84.66 0.45 1.63 16 13 N -0.91 -49.06 11.32 21.45 0.24 -48.81 16 14 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 S 0.29 8.69 20.07 -56.49 -1.13 7.55 16 19 C -0.22 -5.06 10.54 67.30 0.71 -4.35 16 20 C -0.15 -3.97 5.98 -19.89 -0.12 -4.09 16 21 C 0.55 12.97 8.30 70.12 0.58 13.55 16 22 O -0.54 -14.87 15.01 19.63 0.29 -14.58 16 23 O -0.50 -7.84 13.08 -57.25 -0.75 -8.59 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.08 2.14 6.05 -2.39 -0.01 2.12 16 26 H 0.07 1.55 7.15 -2.39 -0.02 1.53 16 27 H 0.43 11.94 6.92 -92.70 -0.64 11.30 16 28 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.78 7.57 -2.38 -0.02 1.76 16 31 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.20 3.41 8.01 -2.91 -0.02 3.39 16 33 H 0.43 2.49 9.11 -74.06 -0.67 1.81 16 Total: -1.00 -65.34 298.38 3.08 -62.26 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -0.13 Total: 12.18 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 4.19 Total: -7.07 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -1.38 Total: -71.60 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.49 Total: -48.46 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 8.69 SS G_CDS: -1.13 Total: 7.55 kcal Total: -65.34 3.08 -62.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600001239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.404 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds