Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.44538 * 123.53509 * 2 1 4 4 C 1.47016 * 123.44888 * 0.03796 * 3 2 1 5 5 O 1.21566 * 119.99781 * 359.72849 * 4 3 2 6 6 O 1.34800 * 120.00416 * 179.45632 * 4 3 2 7 7 C 1.36014 * 113.10756 * 179.77355 * 3 2 1 8 8 S 1.70419 * 110.94742 * 0.22561 * 7 3 2 9 9 C 1.33466 * 123.54315 * 180.22069 * 2 1 3 10 10 N 1.39724 * 124.74283 * 359.97058 * 9 2 1 11 11 C 1.34774 * 120.00490 * 180.25306 * 10 9 2 12 12 O 1.21305 * 119.99856 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99904 * 179.97438 * 11 10 9 14 14 C 1.53003 * 109.46741 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47012 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99975 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99976 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00135 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47156 * 59.99748 * 19 17 15 21 21 H 1.48498 * 109.47387 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47105 * 300.00280 * 19 17 15 23 23 H 1.09002 * 109.47005 * 90.02898 * 1 2 3 24 24 H 1.09003 * 109.46843 * 210.02393 * 1 2 3 25 25 H 1.08999 * 109.47379 * 330.02222 * 1 2 3 26 26 H 0.96704 * 117.00225 * 180.02562 * 6 4 3 27 27 H 1.07998 * 124.52587 * 180.25434 * 7 3 2 28 28 H 0.97008 * 119.99687 * 0.25132 * 10 9 2 29 29 H 1.08994 * 109.47384 * 300.00261 * 13 11 10 30 30 H 1.08998 * 109.46937 * 60.00554 * 13 11 10 31 31 H 1.08994 * 109.47421 * 300.00270 * 14 13 11 32 32 H 1.09003 * 109.47055 * 60.00145 * 14 13 11 33 33 H 0.97006 * 120.00190 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3054 1.2048 0.0000 4 6 1.7306 2.5579 0.0008 5 8 0.5240 2.7057 -0.0035 6 8 2.5414 3.6347 0.0118 7 6 3.6431 0.9586 0.0049 8 16 3.9543 -0.7169 0.0034 9 6 2.2444 -1.1124 -0.0043 10 7 1.7275 -2.4105 -0.0087 11 6 2.5624 -3.4684 -0.0077 12 8 3.7628 -3.2937 -0.0034 13 6 2.0047 -4.8684 -0.0118 14 6 3.1562 -5.8760 -0.0103 15 6 2.5985 -7.2761 -0.0151 16 1 1.5298 -7.4317 -0.0193 17 6 3.4527 -8.3584 -0.0142 18 7 4.7541 -8.1689 -0.0086 19 14 2.7616 -10.0937 -0.0209 20 1 1.9328 -10.2918 -1.2371 21 1 3.8791 -11.0717 -0.0181 22 1 1.9232 -10.2973 1.1878 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 2.1172 4.5038 0.0123 27 1 4.4061 1.7229 0.0097 28 1 0.7675 -2.5502 -0.0125 29 1 1.3899 -5.0173 0.8758 30 1 1.3960 -5.0143 -0.9041 31 1 3.7706 -5.7270 -0.8982 32 1 3.7654 -5.7302 0.8817 33 1 5.3551 -8.9303 -0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600003854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -134.769091 kcal Electronic energy + Delta-G solvation = -19000.009503 eV Core-core repulsion = 15729.866287 eV Total energy + Delta-G solvation = -3270.143216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43771 -41.05733 -38.75204 -36.99129 -35.69451 -35.52428 -33.11745 -31.66129 -28.86295 -27.42673 -25.82750 -24.21510 -22.53125 -21.84390 -20.32220 -19.14914 -18.98831 -18.41963 -17.43614 -17.27316 -16.91866 -16.61837 -16.58586 -16.30455 -15.20437 -15.04458 -14.50680 -14.23077 -14.22782 -14.07487 -13.66258 -13.27747 -13.16017 -12.95287 -12.78391 -12.55463 -12.52519 -11.99929 -11.95719 -11.90254 -11.66667 -11.45616 -11.28531 -10.82072 -10.54259 -9.46631 -9.06289 -8.17317 -6.30544 -0.31319 0.28237 0.54800 0.98356 1.44029 1.47324 1.54948 1.58951 1.77297 2.06969 2.31386 2.45015 3.16556 3.77652 3.86994 4.20023 4.25904 4.43216 4.45967 4.51534 4.61689 4.79021 4.85284 4.97978 5.06667 5.28160 5.37078 5.51558 5.63466 5.64410 5.85804 6.17186 6.20323 6.85541 6.96981 7.01994 7.39683 8.94796 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.047202 B = 0.003160 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.050678 B = 8857.644195 C = 9424.942225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.113 4.113 3 C -0.155 4.155 4 C 0.554 3.446 5 O -0.538 6.538 6 O -0.505 6.505 7 C -0.216 4.216 8 S 0.290 5.710 9 C -0.003 4.003 10 N -0.625 5.625 11 C 0.507 3.493 12 O -0.544 6.544 13 C -0.113 4.113 14 C 0.042 3.958 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.263 1.263 21 H -0.289 1.289 22 H -0.263 1.263 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.434 0.566 27 H 0.201 0.799 28 H 0.433 0.567 29 H 0.113 0.887 30 H 0.113 0.887 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 20.949 0.040 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.172 4.172 4 C 0.398 3.602 5 O -0.430 6.430 6 O -0.320 6.320 7 C -0.355 4.355 8 S 0.555 5.445 9 C -0.215 4.215 10 N -0.273 5.273 11 C 0.297 3.703 12 O -0.421 6.421 13 C -0.153 4.153 14 C 0.004 3.996 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.215 1.215 22 H -0.188 1.188 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.296 0.704 27 H 0.218 0.782 28 H 0.274 0.726 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.679 19.677 0.047 20.480 hybrid contribution -1.720 0.507 -0.017 1.793 sum -7.398 20.184 0.030 21.497 Atomic orbital electron populations 1.20539 0.87445 1.03845 1.03180 1.19528 0.97981 0.88256 1.06870 1.18819 0.92559 0.90545 1.15246 1.20016 0.83775 0.85049 0.71354 1.90844 1.16720 1.87324 1.48123 1.84528 1.43408 1.18694 1.85323 1.26660 1.00057 1.05743 1.03041 1.84760 0.99617 0.92836 1.67259 1.21892 0.99241 0.88386 1.12019 1.43026 1.11615 1.00969 1.71665 1.21860 0.86442 0.88133 0.73904 1.90588 1.16963 1.85285 1.49307 1.21655 1.00692 0.87180 1.05725 1.18707 0.92826 0.92798 0.95268 1.21676 0.93946 0.91709 1.50866 0.90553 1.26062 0.95035 1.04368 0.94719 1.70151 1.03657 1.32352 1.51379 0.85437 0.77767 0.78032 0.79403 1.18807 1.21524 1.18816 0.90559 0.90405 0.90088 0.70434 0.78215 0.72610 0.86874 0.86887 0.99358 0.99351 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.25 71.23 0.66 -1.18 16 2 C -0.11 -2.75 6.03 -19.34 -0.12 -2.86 16 3 C -0.16 -3.63 5.98 -19.89 -0.12 -3.74 16 4 C 0.55 11.85 8.29 70.12 0.58 12.44 16 5 O -0.54 -13.69 15.00 19.62 0.29 -13.39 16 6 O -0.51 -7.16 13.08 -57.11 -0.75 -7.91 16 7 C -0.22 -4.61 10.54 67.30 0.71 -3.90 16 8 S 0.29 7.84 20.07 -56.49 -1.13 6.70 16 9 C 0.00 -0.08 7.07 82.35 0.58 0.51 16 10 N -0.63 -16.30 5.39 -307.06 -1.65 -17.95 16 11 C 0.51 17.57 7.80 87.66 0.68 18.25 16 12 O -0.54 -23.16 13.46 -3.11 -0.04 -23.20 16 13 C -0.11 -4.05 5.64 29.85 0.17 -3.88 16 14 C 0.04 2.16 4.26 29.85 0.13 2.29 16 15 C -0.54 -29.49 9.11 25.60 0.23 -29.25 16 16 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 18 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 19 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 1.24 7.16 -2.39 -0.02 1.22 16 25 H 0.08 1.80 6.04 -2.39 -0.01 1.78 16 26 H 0.43 1.96 9.11 -74.05 -0.67 1.28 16 27 H 0.20 3.12 8.01 -2.91 -0.02 3.10 16 28 H 0.43 8.04 7.50 -92.70 -0.70 7.34 16 29 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 31 H -0.01 -0.71 8.10 -2.39 -0.02 -0.72 16 32 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 33 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -74.89 305.07 2.80 -72.08 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -0.19 Total: 6.96 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 3.97 Total: -11.10 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.37 Total: -75.17 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.49 Total: -44.50 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 7.84 SS G_CDS: -1.13 Total: 6.70 kcal Total: -74.89 2.80 -72.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600003854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.684 kcal (2) G-P(sol) polarization free energy of solvation -74.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds