Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32508 * 124.58025 * 2 1 4 4 C 1.44688 * 113.16764 * 179.81282 * 3 2 1 5 5 C 1.46434 * 123.60639 * 180.24196 * 4 3 2 6 6 O 1.21645 * 119.99987 * 180.17711 * 5 4 3 7 7 O 1.34881 * 120.00396 * 0.18069 * 5 4 3 8 8 C 1.37179 * 112.78063 * 0.39915 * 4 3 2 9 9 N 1.38610 * 124.66438 * 179.87498 * 8 4 3 10 10 C 1.34771 * 119.99977 * 179.72659 * 9 8 4 11 11 O 1.21280 * 119.99974 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99904 * 179.72401 * 10 9 8 13 13 H 1.08999 * 109.47043 * 60.27707 * 12 10 9 14 14 C 1.53003 * 109.47257 * 300.27569 * 12 10 9 15 15 C 1.50704 * 109.47227 * 180.27516 * 12 10 9 16 16 H 1.08005 * 119.99757 * 35.10494 * 15 12 10 17 17 C 1.37878 * 119.99790 * 215.10372 * 15 12 10 18 18 N 1.31516 * 119.99727 * 184.90621 * 17 15 12 19 19 Si 1.86796 * 120.00300 * 4.91278 * 17 15 12 20 20 H 1.48497 * 109.47472 * 84.81487 * 19 17 15 21 21 H 1.48495 * 109.47135 * 204.82240 * 19 17 15 22 22 H 1.48502 * 109.46941 * 324.81678 * 19 17 15 23 23 S 1.70446 * 110.67353 * 359.61442 * 8 4 3 24 24 H 1.09008 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47437 * 299.98480 * 1 2 3 26 26 H 1.09005 * 109.47144 * 59.99033 * 1 2 3 27 27 H 1.08004 * 123.41304 * 0.05213 * 3 2 1 28 28 H 0.96708 * 116.99798 * 180.02562 * 7 5 4 29 29 H 0.97002 * 119.99563 * 359.71965 * 9 8 4 30 30 H 1.09002 * 109.46971 * 295.07145 * 14 12 10 31 31 H 1.08997 * 109.47050 * 55.07072 * 14 12 10 32 32 H 1.08994 * 109.47332 * 175.07614 * 14 12 10 33 33 H 0.97003 * 119.99970 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2590 1.0910 0.0000 4 6 3.6773 0.8047 0.0043 5 6 4.7131 1.8398 0.0104 6 8 5.8880 1.5246 0.0105 7 8 4.3645 3.1428 0.0158 8 6 3.9477 -0.5402 -0.0012 9 7 5.2208 -1.0883 -0.0013 10 6 5.3782 -2.4268 -0.0015 11 8 4.4058 -3.1517 -0.0021 12 6 6.7623 -3.0228 -0.0078 13 1 7.3017 -2.6981 0.8820 14 6 7.5124 -2.5570 -1.2573 15 6 6.6618 -4.5265 -0.0136 16 1 5.8607 -5.0121 -0.5511 17 6 7.5925 -5.2822 0.6674 18 7 7.5624 -6.5943 0.5838 19 14 8.8960 -4.4424 1.7090 20 1 8.3443 -4.1579 3.0580 21 1 10.0780 -5.3324 1.8351 22 1 9.3021 -3.1690 1.0618 23 16 2.5029 -1.4445 -0.0009 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5136 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.8543 2.0923 0.0008 28 1 5.0834 3.7895 0.0193 29 1 5.9985 -0.5085 -0.0013 30 1 7.0217 -2.9554 -2.1454 31 1 7.5091 -1.4678 -1.2982 32 1 8.5408 -2.9161 -1.2187 33 1 8.2174 -7.1260 1.0626 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600103099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = -108.639169 kcal Electronic energy + Delta-G solvation = -19814.981361 eV Core-core repulsion = 16545.971223 eV Total energy + Delta-G solvation = -3269.010138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44171 -39.53261 -37.30324 -36.05410 -34.49301 -33.95093 -31.69295 -30.86792 -26.36821 -25.57959 -25.39725 -22.82719 -21.26414 -20.37437 -19.54943 -18.24231 -17.45430 -16.98627 -16.48595 -15.70707 -15.49551 -15.31604 -14.84291 -14.44309 -13.83084 -13.74843 -13.50235 -13.31978 -12.74947 -12.49984 -12.23493 -12.16778 -12.05828 -11.71467 -11.55782 -11.23266 -10.85394 -10.83681 -10.56044 -10.39516 -10.30466 -9.93720 -9.33763 -9.07183 -8.68929 -8.37273 -7.86218 -6.19476 -4.21346 0.82298 1.37079 1.87092 2.11978 2.95089 3.16638 3.24646 3.25076 3.27800 3.30582 3.35671 4.27949 4.80589 5.08112 5.11599 5.25021 5.46694 5.51747 5.54884 5.81752 5.87027 5.99923 6.07050 6.24009 6.30085 6.37076 6.47304 6.51979 6.68174 7.02057 7.31648 7.61954 7.92621 8.32793 8.48501 8.93512 9.38215 10.92885 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.005422 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.503578 B = 5162.983438 C = 6151.232163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.279 4.279 3 C -0.068 4.068 4 C -0.255 4.255 5 C 0.557 3.443 6 O -0.538 6.538 7 O -0.512 6.512 8 C 0.108 3.892 9 N -0.636 5.636 10 C 0.507 3.493 11 O -0.484 6.484 12 C 0.004 3.996 13 H 0.063 0.937 14 C -0.139 4.139 15 C -0.503 4.503 16 H 0.090 0.910 17 C 0.077 3.923 18 N -0.887 5.887 19 Si 0.867 3.133 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.263 1.263 23 S 0.317 5.683 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.409 0.591 29 H 0.428 0.572 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 17.206 -0.949 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.396 4.396 3 C -0.096 4.096 4 C -0.273 4.273 5 C 0.403 3.597 6 O -0.430 6.430 7 O -0.323 6.323 8 C -0.115 4.115 9 N -0.285 5.285 10 C 0.297 3.703 11 O -0.356 6.356 12 C -0.018 4.018 13 H 0.081 0.919 14 C -0.197 4.197 15 C -0.541 4.541 16 H 0.108 0.892 17 C -0.126 4.126 18 N -0.524 5.524 19 Si 0.694 3.306 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.187 1.187 23 S 0.577 5.423 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.267 0.733 29 H 0.272 0.728 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.127 14.530 -0.891 17.733 hybrid contribution 2.143 2.775 0.662 3.568 sum -7.985 17.305 -0.228 19.060 Atomic orbital electron populations 1.20176 0.87872 1.02565 1.02386 1.24886 1.01155 0.99444 1.14113 1.20611 0.89495 0.99252 1.00224 1.18674 0.93244 0.88664 1.26698 1.19912 0.86976 0.81363 0.71423 1.90780 1.20330 1.82547 1.49368 1.84605 1.44320 1.17084 1.86292 1.22432 0.94446 0.95952 0.98683 1.44254 1.05484 1.09503 1.69219 1.22802 0.95324 0.79042 0.73121 1.90499 1.41131 1.58417 1.45596 1.19377 0.86811 0.98674 0.96952 0.91919 1.22013 1.01267 0.97542 0.98851 1.20669 1.13925 0.86103 1.33387 0.89242 1.24992 0.97029 0.94767 0.95800 1.69866 1.36037 1.04481 1.41990 0.87011 0.81960 0.80047 0.81581 1.19883 1.20901 1.18744 1.84578 0.87609 1.01496 1.68570 0.91640 0.91127 0.91125 0.83692 0.73327 0.72793 0.92520 0.95140 0.91929 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.34 36.00 0.37 -0.27 16 2 C -0.28 -3.49 6.42 -36.22 -0.23 -3.73 16 3 C -0.07 -0.87 9.97 -38.95 -0.39 -1.26 16 4 C -0.26 -3.88 6.00 -104.44 -0.63 -4.50 16 5 C 0.56 8.02 8.28 34.03 0.28 8.30 16 6 O -0.54 -8.87 15.23 -19.38 -0.30 -9.17 16 7 O -0.51 -5.40 13.16 -40.98 -0.54 -5.94 16 8 C 0.11 1.85 6.98 -14.87 -0.10 1.75 16 9 N -0.64 -11.85 5.18 -11.62 -0.06 -11.91 16 10 C 0.51 10.98 7.11 -10.99 -0.08 10.90 16 11 O -0.48 -11.44 13.19 5.56 0.07 -11.36 16 12 C 0.00 0.08 2.30 -92.92 -0.21 -0.13 16 13 H 0.06 1.40 5.29 -51.93 -0.27 1.13 16 14 C -0.14 -2.76 9.12 37.16 0.34 -2.42 16 15 C -0.50 -13.85 8.36 -34.44 -0.29 -14.13 16 16 H 0.09 2.76 7.61 -52.48 -0.40 2.36 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 19 Si 0.87 20.39 26.99 -169.99 -4.59 15.81 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.26 -5.75 6.82 56.52 0.39 -5.37 16 23 S 0.32 4.96 19.92 -107.50 -2.14 2.82 16 24 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.41 2.38 9.11 45.56 0.42 2.80 16 29 H 0.43 7.62 5.52 -40.82 -0.23 7.40 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.03 0.52 7.42 -51.93 -0.39 0.13 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -32.12 301.05 -5.83 -37.95 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -2.56 Total: 6.33 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.04 Total: -3.44 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.71 Total: -37.55 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.76 Total: -26.47 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.59 Total: 15.81 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.14 Total: 2.82 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.12 -5.83 -37.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600103099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.684 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds