Wall clock time and date at job start Tue Mar 31 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37037 * 123.25571 * 2 1 4 4 C 1.35879 * 114.74686 * 180.19711 * 3 2 1 5 5 N 1.38904 * 124.62068 * 179.85112 * 4 3 2 6 6 C 1.34777 * 119.99748 * 179.71722 * 5 4 3 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72574 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99770 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00078 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99915 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47039 * 59.99494 * 14 12 10 16 16 H 1.48494 * 109.47228 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47130 * 300.00212 * 14 12 10 18 18 S 1.70616 * 110.75655 * 359.58289 * 4 3 2 19 19 C 1.36925 * 123.26322 * 179.74661 * 2 1 3 20 20 C 1.41641 * 125.32231 * 359.97438 * 19 2 1 21 21 O 1.21695 * 119.99911 * 0.03552 * 20 19 2 22 22 O 1.34969 * 120.00104 * 180.02562 * 20 19 2 23 23 H 1.09005 * 109.46999 * 270.25179 * 1 2 3 24 24 H 1.08998 * 109.47472 * 30.25606 * 1 2 3 25 25 H 1.09000 * 109.46832 * 150.25557 * 1 2 3 26 26 H 1.07992 * 122.62784 * 0.02979 * 3 2 1 27 27 H 0.97000 * 120.00358 * 359.72459 * 5 4 3 28 28 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 29 29 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 30 30 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 31 31 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 32 32 H 0.97008 * 119.99515 * 180.02562 * 13 12 10 33 33 H 0.96701 * 114.00422 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2585 1.1459 0.0000 4 6 3.6023 0.9449 -0.0042 5 7 4.5519 1.9586 -0.0080 6 6 5.8644 1.6524 -0.0063 7 8 6.2165 0.4918 -0.0020 8 6 6.8947 2.7523 -0.0167 9 6 8.2961 2.1383 -0.0194 10 6 9.3264 3.2381 -0.0291 11 1 9.0129 4.2716 -0.0334 12 6 10.6691 2.9248 -0.0326 13 7 11.0507 1.6663 -0.0279 14 14 11.9462 4.2881 -0.0453 15 1 11.7783 5.1349 1.1629 16 1 13.3063 3.6922 -0.0478 17 1 11.7689 5.1210 -1.2620 18 16 3.9643 -0.7224 0.0032 19 6 2.2580 -1.1449 0.0051 20 6 1.7408 -2.4635 0.0114 21 8 0.5375 -2.6452 0.0121 22 8 2.5826 -3.5185 0.0165 23 1 -0.3633 0.0045 1.0277 24 1 -0.3634 0.8876 -0.5178 25 1 -0.3633 -0.8923 -0.5099 26 1 1.8172 2.1316 0.0005 27 1 4.2704 2.8869 -0.0118 28 1 6.7643 3.3639 -0.9095 29 1 6.7719 3.3735 0.8704 30 1 8.4265 1.5266 0.8733 31 1 8.4188 1.5170 -0.9065 32 1 11.9954 1.4460 -0.0299 33 1 2.1374 -4.3770 0.0203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600256140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:26 Heat of formation + Delta-G solvation = -111.120858 kcal Electronic energy + Delta-G solvation = -18925.362849 eV Core-core repulsion = 15656.245098 eV Total energy + Delta-G solvation = -3269.117752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37670 -40.14828 -38.07919 -36.04819 -34.85232 -33.69929 -31.40071 -29.88483 -28.82056 -26.16999 -23.78350 -22.70135 -21.88334 -20.47935 -18.93186 -18.63350 -17.63358 -17.26600 -16.10876 -15.99709 -15.88253 -15.52312 -15.06108 -14.54181 -13.90156 -13.87387 -13.66950 -13.28996 -13.05021 -12.50868 -12.28392 -12.20248 -12.13858 -11.61102 -11.41069 -11.01420 -10.92691 -10.72477 -10.65034 -10.42942 -10.16533 -9.83555 -9.50489 -9.26110 -8.47266 -8.44179 -8.07759 -6.07677 -4.13349 0.32749 1.30414 1.99363 2.00522 2.76549 2.92198 3.00354 3.27492 3.28426 3.33162 3.34224 4.37725 4.84054 5.01065 5.09418 5.27752 5.34236 5.51772 5.57896 5.60567 5.72210 5.90831 5.90909 6.06541 6.26510 6.26889 6.50729 6.57905 7.13974 7.58221 7.65014 7.83034 7.90531 7.99814 8.26578 8.93434 9.51259 11.03030 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.040933 B = 0.003217 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.874011 B = 8701.571248 C = 9359.680347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.033 3.967 3 C -0.233 4.233 4 C 0.048 3.952 5 N -0.640 5.640 6 C 0.500 3.500 7 O -0.492 6.492 8 C -0.124 4.124 9 C 0.036 3.964 10 C -0.533 4.533 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.888 5.888 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 S 0.371 5.629 19 C -0.373 4.373 20 C 0.562 3.438 21 O -0.524 6.524 22 O -0.509 6.509 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.145 0.855 27 H 0.420 0.580 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.141 -2.331 0.053 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.017 3.983 3 C -0.265 4.265 4 C -0.173 4.173 5 N -0.285 5.285 6 C 0.290 3.710 7 O -0.365 6.365 8 C -0.164 4.164 9 C -0.002 4.002 10 C -0.571 4.571 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 S 0.636 5.364 19 C -0.492 4.492 20 C 0.410 3.590 21 O -0.418 6.418 22 O -0.319 6.319 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.163 0.837 27 H 0.257 0.743 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.332 -3.723 0.056 17.727 hybrid contribution -1.001 1.712 0.010 1.983 sum -18.333 -2.011 0.066 18.444 Atomic orbital electron populations 1.20799 0.89075 1.03823 1.02999 1.18989 0.97106 0.89785 0.92427 1.19691 0.89933 1.00237 1.16663 1.22613 0.93291 0.98327 1.03024 1.43516 1.05077 1.08604 1.71276 1.22368 0.81854 0.92811 0.73993 1.90608 1.78461 1.21216 1.46247 1.21951 0.95742 0.95233 1.03455 1.18959 0.86173 0.96086 0.98979 1.21105 0.91033 0.92664 1.52286 0.92510 1.25014 0.98704 0.95471 0.95039 1.69975 1.16274 1.16765 1.49543 0.86620 0.80579 0.81953 0.78604 1.20185 1.21200 1.20190 1.84727 0.96962 0.90232 1.64464 1.22808 1.02601 0.94548 1.29202 1.18012 0.84025 0.84558 0.72407 1.90864 1.15879 1.86428 1.48579 1.85091 1.41755 1.18501 1.86564 0.90584 0.91569 0.88999 0.83687 0.74270 0.89178 0.89186 0.95503 0.95505 0.92711 0.73493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.49 36.00 0.34 -0.78 16 2 C 0.03 0.40 5.90 -105.53 -0.62 -0.22 16 3 C -0.23 -2.67 10.03 -40.86 -0.41 -3.08 16 4 C 0.05 0.64 7.00 -15.19 -0.11 0.53 16 5 N -0.64 -8.09 5.40 -11.80 -0.06 -8.16 16 6 C 0.50 8.36 7.79 -10.98 -0.09 8.28 16 7 O -0.49 -9.97 13.41 5.55 0.07 -9.89 16 8 C -0.12 -2.19 5.64 -27.88 -0.16 -2.34 16 9 C 0.04 0.88 4.26 -27.88 -0.12 0.76 16 10 C -0.53 -14.22 9.11 -34.44 -0.31 -14.54 16 11 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 14 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 S 0.37 5.46 19.76 -107.50 -2.12 3.33 16 19 C -0.37 -5.12 6.26 -38.76 -0.24 -5.37 16 20 C 0.56 7.51 8.08 32.03 0.26 7.77 16 21 O -0.52 -7.61 14.79 -19.42 -0.29 -7.90 16 22 O -0.51 -5.60 13.30 -41.23 -0.55 -6.15 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 1.08 5.94 -51.93 -0.31 0.77 16 26 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.42 3.69 8.80 -40.82 -0.36 3.33 16 28 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 29 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.03 0.73 8.10 -51.93 -0.42 0.30 16 31 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.41 2.47 8.98 45.56 0.41 2.87 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -33.53 306.41 -6.92 -40.45 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -2.75 Total: 0.82 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.55 Total: -7.42 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.67 Total: -33.66 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.76 Total: -23.95 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -2.12 Total: 3.33 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.53 -6.92 -40.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600256140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.671 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds