Wall clock time and date at job start Tue Mar 31 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37037 * 123.25571 * 2 1 4 4 C 1.35879 * 114.74686 * 180.19711 * 3 2 1 5 5 N 1.38904 * 124.62068 * 179.85112 * 4 3 2 6 6 C 1.34777 * 119.99748 * 179.71722 * 5 4 3 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72574 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99770 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00078 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99915 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47039 * 59.99494 * 14 12 10 16 16 H 1.48494 * 109.47228 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47130 * 300.00212 * 14 12 10 18 18 S 1.70616 * 110.75655 * 359.58289 * 4 3 2 19 19 C 1.36925 * 123.26322 * 179.74661 * 2 1 3 20 20 C 1.41641 * 125.32231 * 359.97438 * 19 2 1 21 21 O 1.21695 * 119.99911 * 0.03552 * 20 19 2 22 22 O 1.34969 * 120.00104 * 180.02562 * 20 19 2 23 23 H 1.09005 * 109.46999 * 270.25179 * 1 2 3 24 24 H 1.08998 * 109.47472 * 30.25606 * 1 2 3 25 25 H 1.09000 * 109.46832 * 150.25557 * 1 2 3 26 26 H 1.07992 * 122.62784 * 0.02979 * 3 2 1 27 27 H 0.97000 * 120.00358 * 359.72459 * 5 4 3 28 28 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 29 29 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 30 30 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 31 31 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 32 32 H 0.97008 * 119.99515 * 180.02562 * 13 12 10 33 33 H 0.96701 * 114.00422 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2585 1.1459 0.0000 4 6 3.6023 0.9449 -0.0042 5 7 4.5519 1.9586 -0.0080 6 6 5.8644 1.6524 -0.0063 7 8 6.2165 0.4918 -0.0020 8 6 6.8947 2.7523 -0.0167 9 6 8.2961 2.1383 -0.0194 10 6 9.3264 3.2381 -0.0291 11 1 9.0129 4.2716 -0.0334 12 6 10.6691 2.9248 -0.0326 13 7 11.0507 1.6663 -0.0279 14 14 11.9462 4.2881 -0.0453 15 1 11.7783 5.1349 1.1629 16 1 13.3063 3.6922 -0.0478 17 1 11.7689 5.1210 -1.2620 18 16 3.9643 -0.7224 0.0032 19 6 2.2580 -1.1449 0.0051 20 6 1.7408 -2.4635 0.0114 21 8 0.5375 -2.6452 0.0121 22 8 2.5826 -3.5185 0.0165 23 1 -0.3633 0.0045 1.0277 24 1 -0.3634 0.8876 -0.5178 25 1 -0.3633 -0.8923 -0.5099 26 1 1.8172 2.1316 0.0005 27 1 4.2704 2.8869 -0.0118 28 1 6.7643 3.3639 -0.9095 29 1 6.7719 3.3735 0.8704 30 1 8.4265 1.5266 0.8733 31 1 8.4188 1.5170 -0.9065 32 1 11.9954 1.4460 -0.0299 33 1 2.1374 -4.3770 0.0203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600256140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:25 Heat of formation + Delta-G solvation = -134.982846 kcal Electronic energy + Delta-G solvation = -18926.397583 eV Core-core repulsion = 15656.245098 eV Total energy + Delta-G solvation = -3270.152485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.48352 -41.30309 -39.12020 -37.05214 -36.02455 -35.61063 -33.16967 -30.99624 -29.76315 -27.92465 -25.11682 -23.72030 -23.35499 -21.84704 -20.01827 -19.71808 -18.80127 -18.67310 -17.80423 -17.03907 -17.01656 -16.70108 -16.46106 -16.15929 -15.26888 -15.00387 -14.64296 -14.34788 -14.24827 -14.23159 -13.44025 -13.32183 -13.31641 -13.03888 -12.78498 -12.58067 -12.53438 -12.06020 -11.95680 -11.71861 -11.63269 -11.43546 -11.30250 -10.83314 -10.54933 -9.52275 -9.14102 -8.17898 -6.31331 -0.72274 0.25831 0.94303 0.96844 1.44073 1.47270 1.54952 1.57703 1.78570 1.98465 2.40340 2.43752 3.16218 3.78798 3.93085 4.13980 4.40729 4.47562 4.49995 4.54647 4.71026 4.81613 4.83531 5.01687 5.13313 5.34112 5.40043 5.50610 5.61457 5.63320 5.84675 6.09776 6.16178 6.80159 6.90646 6.93027 7.39197 8.94168 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.040933 B = 0.003217 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.874011 B = 8701.571248 C = 9359.680347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.031 3.969 3 C -0.208 4.208 4 C 0.037 3.963 5 N -0.617 5.617 6 C 0.503 3.497 7 O -0.537 6.537 8 C -0.111 4.111 9 C 0.038 3.962 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.263 1.263 16 H -0.291 1.291 17 H -0.263 1.263 18 S 0.307 5.693 19 C -0.380 4.380 20 C 0.562 3.438 21 O -0.539 6.539 22 O -0.510 6.510 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.185 0.815 27 H 0.441 0.559 28 H 0.118 0.882 29 H 0.118 0.882 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.262 0.738 33 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.981 0.485 0.059 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.015 3.985 3 C -0.240 4.240 4 C -0.182 4.182 5 N -0.264 5.264 6 C 0.293 3.707 7 O -0.414 6.414 8 C -0.150 4.150 9 C 0.001 3.999 10 C -0.581 4.581 11 H 0.096 0.904 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.794 3.206 15 H -0.187 1.187 16 H -0.217 1.217 17 H -0.188 1.188 18 S 0.573 5.427 19 C -0.498 4.498 20 C 0.410 3.590 21 O -0.434 6.434 22 O -0.323 6.323 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.202 0.798 27 H 0.283 0.717 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.071 0.929 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -19.221 -0.881 0.061 19.241 hybrid contribution -0.554 0.763 0.009 0.943 sum -19.775 -0.118 0.070 19.776 Atomic orbital electron populations 1.20837 0.87316 1.04469 1.03740 1.19433 0.98360 0.89530 0.91179 1.20038 0.88720 1.01601 1.13600 1.22607 0.93954 0.97144 1.04493 1.43037 1.03507 1.09639 1.70204 1.22071 0.83140 0.91721 0.73770 1.90620 1.79584 1.22772 1.48448 1.21675 0.91849 0.95399 1.06120 1.18740 0.90740 0.95160 0.95287 1.21667 0.91594 0.93995 1.50859 0.90352 1.26075 1.01550 0.97900 0.94731 1.70156 1.16604 1.19457 1.51362 0.85432 0.77052 0.78684 0.79440 1.18740 1.21672 1.18757 1.84999 0.98695 0.92903 1.66143 1.22955 1.01667 0.95458 1.29713 1.18040 0.83894 0.84965 0.72105 1.90858 1.16316 1.86751 1.49497 1.85069 1.41766 1.19432 1.86033 0.89641 0.88724 0.90536 0.79826 0.71692 0.86419 0.86429 0.99397 0.99399 0.92902 0.71194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.49 71.24 0.68 -1.19 16 2 C 0.03 0.69 5.90 -20.46 -0.12 0.57 16 3 C -0.21 -4.04 10.03 21.44 0.21 -3.82 16 4 C 0.04 0.93 7.00 83.02 0.58 1.51 16 5 N -0.62 -14.23 5.40 -309.65 -1.67 -15.90 16 6 C 0.50 16.59 7.79 87.66 0.68 17.27 16 7 O -0.54 -22.68 13.41 -3.04 -0.04 -22.72 16 8 C -0.11 -3.77 5.64 29.85 0.17 -3.60 16 9 C 0.04 1.95 4.26 29.85 0.13 2.08 16 10 C -0.54 -28.92 9.11 25.60 0.23 -28.69 16 11 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 12 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 13 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 14 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 15 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 16 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 18 S 0.31 9.20 19.76 -56.49 -1.12 8.09 16 19 C -0.38 -10.19 6.26 22.80 0.14 -10.04 16 20 C 0.56 14.82 8.08 68.66 0.55 15.38 16 21 O -0.54 -15.31 14.79 19.20 0.28 -15.03 16 22 O -0.51 -11.26 13.30 -58.86 -0.78 -12.04 16 23 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.65 5.94 -2.39 -0.01 1.63 16 26 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 27 H 0.44 6.06 8.80 -92.71 -0.82 5.25 16 28 H 0.12 3.36 8.14 -2.38 -0.02 3.34 16 29 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 30 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 31 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 32 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 33 H 0.43 5.02 8.98 -74.06 -0.67 4.35 16 Total: -1.00 -76.07 306.41 2.40 -73.67 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -0.31 Total: 6.67 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 3.72 Total: -10.32 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.39 Total: -72.85 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -0.54 Total: -49.79 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 9.20 SS G_CDS: -1.12 Total: 8.09 kcal Total: -76.07 2.40 -73.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600256140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.315 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds