Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33839 * 124.51681 * 2 1 4 4 C 1.37446 * 115.11190 * 179.97438 * 3 2 1 5 5 C 1.36771 * 113.27542 * 0.02562 * 4 3 2 6 6 C 1.46453 * 125.46071 * 180.25883 * 5 4 3 7 7 O 1.21737 * 120.00342 * 354.42720 * 6 5 4 8 8 N 1.34782 * 119.99645 * 174.42465 * 6 5 4 9 9 C 1.36883 * 120.00091 * 4.06370 * 8 6 5 10 10 H 1.08006 * 120.00185 * 308.33132 * 9 8 6 11 11 C 1.39006 * 119.99885 * 128.33433 * 9 8 6 12 12 N 1.31401 * 120.00167 * 2.98906 * 11 9 8 13 13 Si 1.86799 * 119.99786 * 182.98642 * 11 9 8 14 14 H 1.48492 * 109.47317 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47195 * 120.00338 * 13 11 9 16 16 H 1.48505 * 109.46985 * 240.00006 * 13 11 9 17 17 C 1.46505 * 119.99643 * 184.06580 * 8 6 5 18 18 C 1.53006 * 109.47027 * 94.18431 * 17 8 6 19 19 C 1.50698 * 109.46557 * 179.97438 * 18 17 8 20 20 O 1.20823 * 120.00296 * 359.97438 * 19 18 17 21 21 O 1.34231 * 119.99360 * 180.02562 * 19 18 17 22 22 S 1.70613 * 124.51104 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47211 * 300.00394 * 1 2 3 25 25 H 1.09004 * 109.46520 * 59.99990 * 1 2 3 26 26 H 1.08001 * 122.44823 * 359.97438 * 3 2 1 27 27 H 1.07999 * 123.36281 * 180.02562 * 4 3 2 28 28 H 0.96991 * 119.99839 * 180.02562 * 12 11 9 29 29 H 1.09003 * 109.46868 * 214.18164 * 17 8 6 30 30 H 1.08997 * 109.47244 * 334.18051 * 17 8 6 31 31 H 1.08997 * 109.46713 * 299.99421 * 18 17 8 32 32 H 1.08997 * 109.47419 * 59.99727 * 18 17 8 33 33 H 0.96700 * 116.99574 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2655 1.1028 0.0000 4 6 3.6215 0.8782 0.0006 5 6 3.9493 -0.4496 0.0005 6 6 5.3111 -0.9885 0.0063 7 8 6.2637 -0.2368 -0.0905 8 7 5.5096 -2.3169 0.1190 9 6 4.4389 -3.1693 0.1442 10 1 3.6270 -2.9962 0.8351 11 6 4.3964 -4.2576 -0.7195 12 7 5.4103 -4.5019 -1.5189 13 14 2.8981 -5.3728 -0.7438 14 1 1.9018 -4.8849 0.2433 15 1 2.2954 -5.3628 -2.1009 16 1 3.3057 -6.7572 -0.3934 17 6 6.8715 -2.8484 0.2146 18 6 7.2506 -3.0181 1.6872 19 6 8.6512 -3.5654 1.7854 20 8 9.2813 -3.7966 0.7808 21 8 9.1983 -3.7971 2.9891 22 16 2.4737 -1.4059 0.0006 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8429 2.0967 -0.0004 27 1 4.3548 1.6710 0.0010 28 1 5.3805 -5.2611 -2.1218 29 1 6.9202 -3.8151 -0.2868 30 1 7.5659 -2.1565 -0.2620 31 1 7.2018 -2.0515 2.1885 32 1 6.5562 -3.7100 2.1638 33 1 10.0992 -4.1480 3.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600331152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -102.948190 kcal Electronic energy + Delta-G solvation = -20012.768986 eV Core-core repulsion = 16744.005628 eV Total energy + Delta-G solvation = -3268.763358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84526 -38.69988 -36.99428 -35.79950 -34.98262 -32.23000 -31.52674 -30.51214 -26.70904 -25.52069 -23.97817 -22.51181 -20.88000 -19.80484 -18.72039 -17.71986 -17.28114 -16.40486 -16.10180 -15.58730 -15.14707 -14.74531 -14.38735 -14.01439 -13.76354 -13.41217 -12.88540 -12.72625 -12.65405 -12.43147 -11.99958 -11.64818 -11.51255 -11.41053 -11.35915 -11.16471 -11.09683 -10.96849 -10.48398 -10.15234 -10.13190 -9.89601 -9.11552 -8.78621 -7.90292 -7.72944 -7.53168 -6.60085 -4.57256 1.40891 2.48156 2.65555 2.90310 3.03286 3.06523 3.10287 3.16906 3.42168 3.86914 4.31085 4.69550 4.75168 5.37394 5.57178 5.58784 5.76826 5.77189 5.88973 5.97927 6.09472 6.17788 6.30081 6.32363 6.71412 6.78675 6.83473 6.99625 7.06562 7.16100 7.38384 7.78191 8.05615 8.29269 8.74826 9.22669 9.67638 10.35368 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.006804 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.096154 B = 4114.377440 C = 5331.908461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.290 4.290 3 C -0.161 4.161 4 C -0.096 4.096 5 C -0.226 4.226 6 C 0.549 3.451 7 O -0.589 6.589 8 N -0.439 5.439 9 C -0.351 4.351 10 H 0.101 0.899 11 C 0.066 3.934 12 N -0.839 5.839 13 Si 0.904 3.096 14 H -0.255 1.255 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.123 3.877 18 C -0.124 4.124 19 C 0.483 3.517 20 O -0.514 6.514 21 O -0.525 6.525 22 S 0.287 5.713 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.137 0.863 28 H 0.278 0.722 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 0.727 5.411 7.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.409 4.409 3 C -0.191 4.191 4 C -0.129 4.129 5 C -0.347 4.347 6 C 0.338 3.662 7 O -0.475 6.475 8 N -0.157 5.157 9 C -0.485 4.485 10 H 0.117 0.883 11 C -0.146 4.146 12 N -0.472 5.472 13 Si 0.728 3.272 14 H -0.179 1.179 15 H -0.196 1.196 16 H -0.199 1.199 17 C -0.001 4.001 18 C -0.163 4.163 19 C 0.326 3.674 20 O -0.401 6.401 21 O -0.336 6.336 22 S 0.561 5.439 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.154 0.846 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.015 -0.467 4.898 7.025 hybrid contribution 0.228 0.836 -0.068 0.869 sum -4.786 0.369 4.830 6.810 Atomic orbital electron populations 1.20175 0.89320 1.01925 1.01746 1.25526 1.01785 1.04117 1.09434 1.19603 0.92801 0.98467 1.08265 1.20485 0.95615 0.95197 1.01622 1.24599 0.97912 0.97063 1.15104 1.17447 0.86340 0.83219 0.79144 1.90674 1.42279 1.58901 1.55682 1.43112 1.05672 1.03520 1.63384 1.19308 0.98972 1.08729 1.21471 0.88288 1.25692 0.97516 0.97969 0.93414 1.69700 1.29299 1.27916 1.20257 0.86183 0.81537 0.79968 0.79530 1.17863 1.19580 1.19888 1.21352 0.84007 1.03717 0.90982 1.21849 0.88710 1.02545 1.03174 1.23754 0.89683 0.73919 0.80076 1.90704 1.63422 1.48629 1.37365 1.84591 1.35616 1.78345 1.35087 1.84443 0.92212 1.02530 1.64755 0.92106 0.91710 0.91753 0.86321 0.84573 0.91085 0.86106 0.91281 0.88734 0.87531 0.74118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.33 36.01 0.37 -0.58 16 2 C -0.29 -4.91 6.28 -35.85 -0.23 -5.14 16 3 C -0.16 -2.79 9.99 -41.41 -0.41 -3.20 16 4 C -0.10 -1.91 10.02 -40.40 -0.40 -2.31 16 5 C -0.23 -4.98 6.31 -36.81 -0.23 -5.22 16 6 C 0.55 13.67 7.60 -12.95 -0.10 13.57 16 7 O -0.59 -15.90 16.34 5.16 0.08 -15.82 16 8 N -0.44 -10.63 2.47 -116.36 -0.29 -10.91 16 9 C -0.35 -8.15 6.76 -15.01 -0.10 -8.26 16 10 H 0.10 2.19 5.38 -32.24 -0.17 2.02 16 11 C 0.07 1.53 5.38 -17.45 -0.09 1.44 16 12 N -0.84 -20.88 11.15 55.50 0.62 -20.26 16 13 Si 0.90 17.66 29.55 -169.99 -5.02 12.64 16 14 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 15 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 17 C 0.12 2.87 4.41 -4.04 -0.02 2.85 16 18 C -0.12 -2.37 6.12 -27.88 -0.17 -2.54 16 19 C 0.48 8.68 8.33 36.00 0.30 8.98 16 20 O -0.51 -10.77 16.74 -18.75 -0.31 -11.09 16 21 O -0.52 -7.32 13.42 -39.26 -0.53 -7.84 16 22 S 0.29 5.52 18.28 -107.50 -1.97 3.56 16 23 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.14 2.61 8.06 -52.49 -0.42 2.19 16 28 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.12 3.04 5.60 -51.93 -0.29 2.74 16 30 H 0.07 1.74 7.21 -51.93 -0.37 1.36 16 31 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 33 H 0.40 3.66 9.10 45.56 0.41 4.08 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -29.57 303.21 -6.45 -36.01 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -2.52 Total: 9.56 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.09 Total: -0.41 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.33 Total: -31.18 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.76 Total: -34.75 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.02 Total: 12.64 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -1.97 Total: 3.56 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.57 -6.45 -36.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600331152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.935 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds